| http://purl.uniprot.org/unirules/MF_02083#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:738696 up:source unirule:MF_02083 .
_:738697 up:source unirule:MF_02083 .
_:738698 up:source unirule:MF_02083 .
_:738699 up:source unirule:MF_02083 .
_:738700 up:source unirule:MF_02083 .
_:738701 up:source unirule:MF_02083 .
_:738702 up:source unirule:MF_02083 .
_:738703 up:source unirule:MF_02083 .
_:738704 up:source unirule:MF_02083 .
_:738705 up:source unirule:MF_02083 .
_:738706 up:source unirule:MF_02083 .
_:738707 up:source unirule:MF_02083 .
_:738708 up:source unirule:MF_02083 .
_:738709 up:source unirule:MF_02083 .
_:738710 up:source unirule:MF_02083 .
_:738711 up:source unirule:MF_02083 .
_:738712 up:source unirule:MF_02083 .
_:738713 up:source unirule:MF_02083 .
_:738714 up:source unirule:MF_02083 .
_:738715 up:source unirule:MF_02083 .
_:738716 up:source unirule:MF_02083 .
_:738717 up:source unirule:MF_02083 .
_:738718 up:source unirule:MF_02083 .
?this up:annotation ?annotation1 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0005737 ,
GO:0016620 ,
GO:0019878 ,
keyword:28 ,
keyword:457 ,
keyword:521 ,
keyword:560 ,
keyword:963 .
?gene0 skos:prefLabel 'lysY' .
?annotation1 up:activity ?activity2 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity2 up:catalyticActivity ;
up:enzymeClass .
?annotation3 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-lysine biosynthesis via AAA pathway; L-lysine from L-alpha-aminoadipate (Thermus route): step 3/5.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the NAGSA dehydrogenase family. Type 1 subfamily. LysY sub-subfamily.' .
?case7 up:classifiedWith GO:0042450 ,
keyword:55 .
?case9 up:recommendedName ?name10 .
?name10 up:ecName '1.2.1.103' ,
'1.2.1.106' ;
up:fullName '[LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate reductase' ;
rdf:type up:Structured_Name .
?case11 up:recommendedName ?name12 .
?name12 up:ecName '1.2.1.103' ;
up:fullName '[LysW]-L-2-aminoadipate 6-phosphate reductase' ;
rdf:type up:Structured_Name .
?case13 up:recommendedName ?name14 .
?name14 up:ecName '1.2.1.103' ;
up:fullName 'Putative [LysW]-L-2-aminoadipate 6-phosphate reductase' ;
rdf:type up:Structured_Name .
?case15 up:recommendedName ?name16 .
?name16 up:ecName '1.2.1.103' ,
'1.2.1.106' ;
up:fullName 'Putative [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate reductase' ;
rdf:type up:Structured_Name .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:58349 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:58349 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
rdf:type up:Active_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:58349 .
_:738719 a rdf:Statement ;
up:attribution _:738696 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:738720 a rdf:Statement ;
up:attribution _:738697 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:738721 a rdf:Statement ;
up:attribution _:738698 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:738722 a rdf:Statement ;
up:attribution _:738699 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:738723 a rdf:Statement ;
up:attribution _:738700 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:738724 a rdf:Statement ;
up:attribution _:738701 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:738725 a rdf:Statement ;
up:attribution _:738702 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:738726 a rdf:Statement ;
up:attribution _:738703 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:457 .
_:738727 a rdf:Statement ;
up:attribution _:738704 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:738728 a rdf:Statement ;
up:attribution _:738705 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:738729 a rdf:Statement ;
up:attribution _:738706 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016620 .
_:738730 a rdf:Statement ;
up:attribution _:738707 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019878 .
_:738731 a rdf:Statement ;
up:attribution _:738708 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:738732 a rdf:Statement ;
up:attribution _:738709 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:55 .
_:738733 a rdf:Statement ;
up:attribution _:738710 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042450 .
_:738734 a rdf:Statement ;
up:attribution _:738711 ;
rdf:subject ?case9 ;
rdf:predicate up:recommendedName ;
rdf:object ?name10 .
_:738735 a rdf:Statement ;
up:attribution _:738712 ;
rdf:subject ?case11 ;
rdf:predicate up:recommendedName ;
rdf:object ?name12 .
_:738736 a rdf:Statement ;
up:attribution _:738713 ;
rdf:subject ?case13 ;
rdf:predicate up:recommendedName ;
rdf:object ?name14 .
_:738737 a rdf:Statement ;
up:attribution _:738714 ;
rdf:subject ?case15 ;
rdf:predicate up:recommendedName ;
rdf:object ?name16 .
_:738738 a rdf:Statement ;
up:source unirule:MF_02083 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:738739 a rdf:Statement ;
up:attribution _:738715 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:738740 a rdf:Statement ;
up:source unirule:MF_02083 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:738741 a rdf:Statement ;
up:attribution _:738716 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:738742 a rdf:Statement ;
up:source unirule:MF_02083 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:738743 a rdf:Statement ;
up:attribution _:738717 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:738744 a rdf:Statement ;
up:source unirule:MF_02083 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:738745 a rdf:Statement ;
up:attribution _:738718 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02083
#Rule MF_02083 Created by:? on:2016-12-22 Modified by:Catherine Rivoire on:2025-06-13
VALUES ?supertaxon44 {taxon:2157 taxon:200795 taxon:1297}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02083 .
?thisOrganism rdfs:subClassOf+ ?supertaxon44 .
BIND(URI(CONCAT(STR(?this), '#MF_02083a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_02083a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02083a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02083a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch49 faldo:location ?templateMotifSequenceMatchRegionO5014650 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5014652 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO50146MF_0208345 .
?templateMotifSequenceMatchRegionO5014650 faldo:begin ?templateMotifSequenceMatchBeginO5014651 .
?templateMotifSequenceMatchBeginO5014651 faldo:position ?templateMotifSequenceMatchBeginPositionO5014646 ;
faldo:reference isoform:O50146-1 .
?templateMotifSequenceProfileAlignmentOperationO5014652 edam:has_input signature:MF_02083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch53 faldo:location ?targetMotifMatchRegionMatch54 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0208356 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO50146MF_0208347 .
?targetMotifMatchRegionMatch54 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0208355 .
?targetMotifMatchRegionMatchBeginMF_0208355 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0208348 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0208356 edam:has_input signature:MF_02083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO50146MF_0208345, 1, (STRLEN(?templateMotifCigarO50146MF_0208345) - STRLEN(REPLACE(?templateMotifCigarO50146MF_0208345, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionO5014646) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO50146MF_0208347, 1, (STRLEN(?targetMotifMatchCigarO50146MF_0208347) - STRLEN(REPLACE(?targetMotifMatchCigarO50146MF_0208347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO50146MF_0208347, 1, (STRLEN(?targetMotifMatchCigarO50146MF_0208347) - STRLEN(REPLACE(?targetMotifMatchCigarO50146MF_0208347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0208348) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO50146MF_0208345, 1, (STRLEN(?templateMotifCigarO50146MF_0208345) - STRLEN(REPLACE(?templateMotifCigarO50146MF_0208345, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionO5014646) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO50146MF_0208347, 1, (STRLEN(?targetMotifMatchCigarO50146MF_0208347) - STRLEN(REPLACE(?targetMotifMatchCigarO50146MF_0208347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO50146MF_0208347, 1, (STRLEN(?targetMotifMatchCigarO50146MF_0208347) - STRLEN(REPLACE(?targetMotifMatchCigarO50146MF_0208347, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) .
BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0208348) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER (REGEX('[ST]G[ARNDCQEGHILKMFPSTWYVBZJUOX][VITA]', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02083a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionO5014667 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5014669 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO50146MF_0208362 .
?templateMotifSequenceMatchRegionO5014667 faldo:begin ?templateMotifSequenceMatchBeginO5014668 .
?templateMotifSequenceMatchBeginO5014668 faldo:position ?templateMotifSequenceMatchBeginPositionO5014663 ;
faldo:reference isoform:O50146-1 .
?templateMotifSequenceProfileAlignmentOperationO5014669 edam:has_input signature:MF_02083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0208373 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO50146MF_0208364 .
?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0208372 .
?targetMotifMatchRegionMatchBeginMF_0208372 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0208365 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0208373 edam:has_input signature:MF_02083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO50146MF_0208362, 1, (STRLEN(?templateMotifCigarO50146MF_0208362) - STRLEN(REPLACE(?templateMotifCigarO50146MF_0208362, CONCAT('^(?:-*[^-]){', STR(((36 - ?templateMotifSequenceMatchBeginPositionO5014663) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO50146MF_0208364, 1, (STRLEN(?targetMotifMatchCigarO50146MF_0208364) - STRLEN(REPLACE(?targetMotifMatchCigarO50146MF_0208364, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO50146MF_0208364, 1, (STRLEN(?targetMotifMatchCigarO50146MF_0208364) - STRLEN(REPLACE(?targetMotifMatchCigarO50146MF_0208364, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0208365) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO50146MF_0208362, 1, (STRLEN(?templateMotifCigarO50146MF_0208362) - STRLEN(REPLACE(?templateMotifCigarO50146MF_0208362, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionO5014663) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO50146MF_0208364, 1, (STRLEN(?targetMotifMatchCigarO50146MF_0208364) - STRLEN(REPLACE(?targetMotifMatchCigarO50146MF_0208364, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO50146MF_0208364, 1, (STRLEN(?targetMotifMatchCigarO50146MF_0208364) - STRLEN(REPLACE(?targetMotifMatchCigarO50146MF_0208364, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0208365) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER (REGEX('S[RK][RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02083a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionO5014684 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5014686 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO50146MF_0208379 .
?templateMotifSequenceMatchRegionO5014684 faldo:begin ?templateMotifSequenceMatchBeginO5014685 .
?templateMotifSequenceMatchBeginO5014685 faldo:position ?templateMotifSequenceMatchBeginPositionO5014680 ;
faldo:reference isoform:O50146-1 .
?templateMotifSequenceProfileAlignmentOperationO5014686 edam:has_input signature:MF_02083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0208390 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO50146MF_0208381 .
?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0208389 .
?targetMotifMatchRegionMatchBeginMF_0208389 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0208382 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0208390 edam:has_input signature:MF_02083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO50146MF_0208379, 1, (STRLEN(?templateMotifCigarO50146MF_0208379) - STRLEN(REPLACE(?templateMotifCigarO50146MF_0208379, CONCAT('^(?:-*[^-]){', STR(((148 - ?templateMotifSequenceMatchBeginPositionO5014680) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO50146MF_0208381, 1, (STRLEN(?targetMotifMatchCigarO50146MF_0208381) - STRLEN(REPLACE(?targetMotifMatchCigarO50146MF_0208381, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO50146MF_0208381, 1, (STRLEN(?targetMotifMatchCigarO50146MF_0208381) - STRLEN(REPLACE(?targetMotifMatchCigarO50146MF_0208381, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0208382) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_02083a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionO5014699 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO50146101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO50146MF_0208394 .
?templateMotifSequenceMatchRegionO5014699 faldo:begin ?templateMotifSequenceMatchBeginO50146100 .
?templateMotifSequenceMatchBeginO50146100 faldo:position ?templateMotifSequenceMatchBeginPositionO5014695 ;
faldo:reference isoform:O50146-1 .
?templateMotifSequenceProfileAlignmentOperationO50146101 edam:has_input signature:MF_02083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02083105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO50146MF_0208396 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02083104 .
?targetMotifMatchRegionMatchBeginMF_02083104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0208397 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02083105 edam:has_input signature:MF_02083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO50146MF_0208394, 1, (STRLEN(?templateMotifCigarO50146MF_0208394) - STRLEN(REPLACE(?templateMotifCigarO50146MF_0208394, CONCAT('^(?:-*[^-]){', STR(((312 - ?templateMotifSequenceMatchBeginPositionO5014695) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO50146MF_0208396, 1, (STRLEN(?targetMotifMatchCigarO50146MF_0208396) - STRLEN(REPLACE(?targetMotifMatchCigarO50146MF_0208396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO50146MF_0208396, 1, (STRLEN(?targetMotifMatchCigarO50146MF_0208396) - STRLEN(REPLACE(?targetMotifMatchCigarO50146MF_0208396, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0208397) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_02083a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2281 .
BIND(?this AS ?case9) .
BIND(URI(CONCAT(STR(?this), '#MF_02083a10')) AS ?name10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1297 .
BIND(?this AS ?case11) .
BIND(URI(CONCAT(STR(?this), '#MF_02083a12')) AS ?name12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:200795 .
BIND(?this AS ?case13) .
BIND(URI(CONCAT(STR(?this), '#MF_02083a14')) AS ?name14) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2281 .
})) .
BIND(?this AS ?case15) .
BIND(URI(CONCAT(STR(?this), '#MF_02083a16')) AS ?name16) .
}
}
"xsd:string |
