| http://purl.uniprot.org/unirules/MF_02089#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:741235 up:source unirule:MF_02089 .
_:741236 up:source unirule:MF_02089 .
_:741237 up:source unirule:MF_02089 .
_:741238 up:source unirule:MF_02089 .
_:741239 up:source unirule:MF_02089 .
_:741240 up:source unirule:MF_02089 .
_:741241 up:source unirule:MF_02089 .
_:741242 up:source unirule:MF_02089 .
_:741243 up:source unirule:MF_02089 .
_:741244 up:source unirule:MF_02089 .
_:741245 up:source unirule:MF_02089 .
_:741246 up:source unirule:MF_02089 .
_:741247 up:source unirule:MF_02089 .
_:741248 up:source unirule:MF_02089 .
_:741249 up:source unirule:MF_02089 .
_:741250 up:source unirule:MF_02089 .
_:741251 up:source unirule:MF_02089 .
_:741252 up:source unirule:MF_02089 .
_:741253 up:source unirule:MF_02089 .
_:741254 up:source unirule:MF_02089 .
_:741255 up:source unirule:MF_02089 .
_:741256 up:source unirule:MF_02089 .
_:741257 up:source unirule:MF_02089 .
_:741258 up:source unirule:MF_02089 .
_:741259 up:source unirule:MF_02089 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0006400 ,
GO:0008616 ,
GO:0052693 ,
keyword:1015 ,
keyword:560 ,
keyword:671 ,
keyword:676 ,
keyword:819 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.17.99.6' ;
up:fullName 'Epoxyqueuosine reductase QueH' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Queuosine biosynthesis protein QueH' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'queH' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Pathway_Annotation ;
rdfs:comment 'tRNA modification; tRNA-queuosine biosynthesis.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the QueH family.' .
?case8 up:classifiedWith GO:0051539 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 .
?pfs9 up:annotation ?annotation10 ,
?annotation16 ,
?annotation22 ,
?annotation28 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:49883 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:49883 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:49883 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf chebi:49883 .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Disulfide_Bond_Annotation ;
rdfs:comment 'Redox-active' .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
_:741260 a rdf:Statement ;
up:attribution _:741235 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:741261 a rdf:Statement ;
up:attribution _:741236 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:741262 a rdf:Statement ;
up:attribution _:741237 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:741263 a rdf:Statement ;
up:attribution _:741238 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:741264 a rdf:Statement ;
up:attribution _:741239 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:741265 a rdf:Statement ;
up:attribution _:741240 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:741266 a rdf:Statement ;
up:attribution _:741241 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:741267 a rdf:Statement ;
up:attribution _:741242 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:741268 a rdf:Statement ;
up:attribution _:741243 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:741269 a rdf:Statement ;
up:attribution _:741244 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:671 .
_:741270 a rdf:Statement ;
up:attribution _:741245 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:676 .
_:741271 a rdf:Statement ;
up:attribution _:741246 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:741272 a rdf:Statement ;
up:attribution _:741247 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0052693 .
_:741273 a rdf:Statement ;
up:attribution _:741248 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008616 .
_:741274 a rdf:Statement ;
up:attribution _:741249 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006400 .
_:741275 a rdf:Statement ;
up:attribution _:741250 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:741276 a rdf:Statement ;
up:attribution _:741251 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:741277 a rdf:Statement ;
up:attribution _:741252 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:741278 a rdf:Statement ;
up:attribution _:741253 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:741279 a rdf:Statement ;
up:attribution _:741254 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051539 .
_:741280 a rdf:Statement ;
up:source unirule:MF_02089 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:741281 a rdf:Statement ;
up:attribution _:741255 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:741282 a rdf:Statement ;
up:source unirule:MF_02089 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:741283 a rdf:Statement ;
up:attribution _:741256 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:741284 a rdf:Statement ;
up:source unirule:MF_02089 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:741285 a rdf:Statement ;
up:attribution _:741257 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:741286 a rdf:Statement ;
up:source unirule:MF_02089 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:741287 a rdf:Statement ;
up:attribution _:741258 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:741288 a rdf:Statement ;
up:source unirule:MF_02089 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:741289 a rdf:Statement ;
up:attribution _:741259 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02089
#Rule MF_02089 Created by:? on:2017-03-23 Modified by:Catherine Rivoire on:2025-06-12
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02089 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_02089a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02089a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02089a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02089a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02089a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02089a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionA0A0H3JUG645 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0H3JUG647 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0H3JUG6MF_0208940 .
?templateMotifSequenceMatchRegionA0A0H3JUG645 faldo:begin ?templateMotifSequenceMatchBeginA0A0H3JUG646 .
?templateMotifSequenceMatchBeginA0A0H3JUG646 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0H3JUG641 ;
faldo:reference isoform:A0A0H3JUG6-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0H3JUG647 edam:has_input signature:MF_02089 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0208951 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0H3JUG6MF_0208942 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0208950 .
?targetMotifMatchRegionMatchBeginMF_0208950 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0208943 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0208951 edam:has_input signature:MF_02089 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3JUG6MF_0208940, 1, (STRLEN(?templateMotifCigarA0A0H3JUG6MF_0208940) - STRLEN(REPLACE(?templateMotifCigarA0A0H3JUG6MF_0208940, CONCAT('^(?:-*[^-]){', STR(((43 - ?templateMotifSequenceMatchBeginPositionA0A0H3JUG641) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208942) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208942) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0208943) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3JUG6MF_0208940, 1, (STRLEN(?templateMotifCigarA0A0H3JUG6MF_0208940) - STRLEN(REPLACE(?templateMotifCigarA0A0H3JUG6MF_0208940, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionA0A0H3JUG641) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208942) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208942) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0208943) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3JUG6MF_0208940, 1, (STRLEN(?templateMotifCigarA0A0H3JUG6MF_0208940) - STRLEN(REPLACE(?templateMotifCigarA0A0H3JUG6MF_0208940, CONCAT('^(?:-*[^-]){', STR(((129 - ?templateMotifSequenceMatchBeginPositionA0A0H3JUG641) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208942) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208942) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) .
BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0208943) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3JUG6MF_0208940, 1, (STRLEN(?templateMotifCigarA0A0H3JUG6MF_0208940) - STRLEN(REPLACE(?templateMotifCigarA0A0H3JUG6MF_0208940, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionA0A0H3JUG641) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208942) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208942) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208942, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) .
BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0208943) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'C')) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch68 faldo:location ?templateMotifSequenceMatchRegionA0A0H3JUG669 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA0A0H3JUG671 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA0A0H3JUG6MF_0208964 .
?templateMotifSequenceMatchRegionA0A0H3JUG669 faldo:begin ?templateMotifSequenceMatchBeginA0A0H3JUG670 .
?templateMotifSequenceMatchBeginA0A0H3JUG670 faldo:position ?templateMotifSequenceMatchBeginPositionA0A0H3JUG665 ;
faldo:reference isoform:A0A0H3JUG6-1 .
?templateMotifSequenceProfileAlignmentOperationA0A0H3JUG671 edam:has_input signature:MF_02089 ;
rdf:type edam:operation_0300 .
?targetMotifMatch72 faldo:location ?targetMotifMatchRegionMatch73 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0208975 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA0A0H3JUG6MF_0208966 .
?targetMotifMatchRegionMatch73 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0208974 .
?targetMotifMatchRegionMatchBeginMF_0208974 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0208967 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0208975 edam:has_input signature:MF_02089 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3JUG6MF_0208964, 1, (STRLEN(?templateMotifCigarA0A0H3JUG6MF_0208964) - STRLEN(REPLACE(?templateMotifCigarA0A0H3JUG6MF_0208964, CONCAT('^(?:-*[^-]){', STR(((211 - ?templateMotifSequenceMatchBeginPositionA0A0H3JUG665) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208966, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208966) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208966, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208966, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208966) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208966, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0208967) - 1) AS ?thisPositionOn38) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA0A0H3JUG6MF_0208964, 1, (STRLEN(?templateMotifCigarA0A0H3JUG6MF_0208964) - STRLEN(REPLACE(?templateMotifCigarA0A0H3JUG6MF_0208964, CONCAT('^(?:-*[^-]){', STR(((213 - ?templateMotifSequenceMatchBeginPositionA0A0H3JUG665) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208966, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208966) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208966, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA0A0H3JUG6MF_0208966, 1, (STRLEN(?targetMotifMatchCigarA0A0H3JUG6MF_0208966) - STRLEN(REPLACE(?targetMotifMatchCigarA0A0H3JUG6MF_0208966, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0208967) - 1) AS ?thisPositionOn39) .
BIND(?this AS ?pfs2t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn38, (?thisPositionOn39 - ?thisPositionOn38)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02089a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag81) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag81, ?UNBOUND_VARIABLE) AS ?case8) .
}
"xsd:string |
