| http://purl.uniprot.org/unirules/MF_02093#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:743056 up:source unirule:MF_02093 .
_:743057 up:source unirule:MF_02093 .
_:743058 up:source unirule:MF_02093 .
_:743059 up:source unirule:MF_02093 .
_:743060 up:source unirule:MF_02093 .
_:743061 up:source unirule:MF_02093 .
_:743062 up:source unirule:MF_02093 .
_:743063 up:source unirule:MF_02093 .
_:743064 up:source unirule:MF_02093 .
_:743065 up:source unirule:MF_02093 .
_:743066 up:source unirule:MF_02093 .
_:743067 up:source unirule:MF_02093 .
_:743068 up:source unirule:MF_02093 .
_:743069 up:source unirule:MF_02093 .
_:743070 up:source unirule:MF_02093 .
_:743071 up:source unirule:MF_02093 .
_:743072 up:source unirule:MF_02093 .
_:743073 up:source unirule:MF_02093 .
_:743074 up:source unirule:MF_02093 .
_:743075 up:source unirule:MF_02093 .
_:743076 up:source unirule:MF_02093 .
_:743077 up:source unirule:MF_02093 .
_:743078 up:source unirule:MF_02093 .
_:743079 up:source unirule:MF_02093 .
_:743080 up:source unirule:MF_02093 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0005506 ,
GO:0005886 ,
GO:0010436 ,
GO:0016121 ,
keyword:1003 ,
keyword:1133 ,
keyword:223 ,
keyword:408 ,
keyword:472 ,
keyword:479 ,
keyword:560 ,
keyword:812 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.13.11.63' ;
up:fullName "Probable beta-carotene 15,15'-dioxygenase" ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment "Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal." .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 up:cofactor chebi:29033 ;
rdf:type up:Cofactor_Annotation .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Brp/Blh beta-carotene diooxygenase family.' .
?pfs8 up:annotation ?annotation9 ,
?annotation15 ,
?annotation21 ,
?annotation27 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:24875 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:24875 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:24875 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:24875 .
?sam33 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane34 faldo:begin ?transmembraneb35 ;
faldo:end ?transmembranee36 .
?transmembraneb35 faldo:position ?transmembranebp37 .
?transmembranee36 faldo:position ?transmembraneep38 .
?keyword39 up:range ?transmembrane34 .
?keyword40 up:range ?transmembrane34 .
?keyword41 up:range ?transmembrane34 .
_:743081 a rdf:Statement ;
up:attribution _:743056 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:743082 a rdf:Statement ;
up:attribution _:743057 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:743083 a rdf:Statement ;
up:attribution _:743058 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:743084 a rdf:Statement ;
up:attribution _:743059 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:743085 a rdf:Statement ;
up:attribution _:743060 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:743086 a rdf:Statement ;
up:attribution _:743061 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:743087 a rdf:Statement ;
up:attribution _:743062 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:743088 a rdf:Statement ;
up:attribution _:743063 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:223 .
_:743089 a rdf:Statement ;
up:attribution _:743064 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:743090 a rdf:Statement ;
up:attribution _:743065 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:743091 a rdf:Statement ;
up:attribution _:743066 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:743092 a rdf:Statement ;
up:attribution _:743067 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:743093 a rdf:Statement ;
up:attribution _:743068 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:743094 a rdf:Statement ;
up:attribution _:743069 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:743095 a rdf:Statement ;
up:attribution _:743070 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005506 .
_:743096 a rdf:Statement ;
up:attribution _:743071 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0010436 .
_:743097 a rdf:Statement ;
up:attribution _:743072 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016121 .
_:743098 a rdf:Statement ;
up:attribution _:743073 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:743099 a rdf:Statement ;
up:source unirule:MF_02093 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:743100 a rdf:Statement ;
up:attribution _:743074 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:743101 a rdf:Statement ;
up:source unirule:MF_02093 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:743102 a rdf:Statement ;
up:attribution _:743075 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:743103 a rdf:Statement ;
up:source unirule:MF_02093 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:743104 a rdf:Statement ;
up:attribution _:743076 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:743105 a rdf:Statement ;
up:source unirule:MF_02093 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:743106 a rdf:Statement ;
up:attribution _:743077 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:743107 a rdf:Statement ;
up:attribution _:743078 ;
rdf:subject ?sam33 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:743108 a rdf:Statement ;
up:attribution _:743079 ;
rdf:subject ?sam33 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:743109 a rdf:Statement ;
up:attribution _:743080 ;
rdf:subject ?sam33 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02093
#Rule MF_02093 Created by:? on:2017-08-29 Modified by:Edouard de Castro on:2023-06-01
VALUES ?supertaxon42 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02093 .
?thisOrganism rdfs:subClassOf+ ?supertaxon42 .
BIND(URI(CONCAT(STR(?this), '#MF_02093a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02093a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_02093a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02093a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02093a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02093a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch47 faldo:location ?templateMotifSequenceMatchRegionQ4PNI048 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ4PNI050 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ4PNI0MF_0209343 .
?templateMotifSequenceMatchRegionQ4PNI048 faldo:begin ?templateMotifSequenceMatchBeginQ4PNI049 .
?templateMotifSequenceMatchBeginQ4PNI049 faldo:position ?templateMotifSequenceMatchBeginPositionQ4PNI044 ;
faldo:reference isoform:Q4PNI0-1 .
?templateMotifSequenceProfileAlignmentOperationQ4PNI050 edam:has_input signature:MF_02093 ;
rdf:type edam:operation_0300 .
?targetMotifMatch51 faldo:location ?targetMotifMatchRegionMatch52 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0209354 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ4PNI0MF_0209345 .
?targetMotifMatchRegionMatch52 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0209353 .
?targetMotifMatchRegionMatchBeginMF_0209353 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0209346 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0209354 edam:has_input signature:MF_02093 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ4PNI0MF_0209343, 1, (STRLEN(?templateMotifCigarQ4PNI0MF_0209343) - STRLEN(REPLACE(?templateMotifCigarQ4PNI0MF_0209343, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionQ4PNI044) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ4PNI0MF_0209345, 1, (STRLEN(?targetMotifMatchCigarQ4PNI0MF_0209345) - STRLEN(REPLACE(?targetMotifMatchCigarQ4PNI0MF_0209345, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ4PNI0MF_0209345, 1, (STRLEN(?targetMotifMatchCigarQ4PNI0MF_0209345) - STRLEN(REPLACE(?targetMotifMatchCigarQ4PNI0MF_0209345, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0209346) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ4PNI0MF_0209343, 1, (STRLEN(?templateMotifCigarQ4PNI0MF_0209343) - STRLEN(REPLACE(?templateMotifCigarQ4PNI0MF_0209343, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionQ4PNI044) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ4PNI0MF_0209345, 1, (STRLEN(?targetMotifMatchCigarQ4PNI0MF_0209345) - STRLEN(REPLACE(?targetMotifMatchCigarQ4PNI0MF_0209345, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ4PNI0MF_0209345, 1, (STRLEN(?targetMotifMatchCigarQ4PNI0MF_0209345) - STRLEN(REPLACE(?targetMotifMatchCigarQ4PNI0MF_0209345, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) .
BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0209346) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ4PNI0MF_0209343, 1, (STRLEN(?templateMotifCigarQ4PNI0MF_0209343) - STRLEN(REPLACE(?templateMotifCigarQ4PNI0MF_0209343, CONCAT('^(?:-*[^-]){', STR(((188 - ?templateMotifSequenceMatchBeginPositionQ4PNI044) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ4PNI0MF_0209345, 1, (STRLEN(?targetMotifMatchCigarQ4PNI0MF_0209345) - STRLEN(REPLACE(?targetMotifMatchCigarQ4PNI0MF_0209345, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ4PNI0MF_0209345, 1, (STRLEN(?targetMotifMatchCigarQ4PNI0MF_0209345) - STRLEN(REPLACE(?targetMotifMatchCigarQ4PNI0MF_0209345, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) .
BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0209346) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ4PNI0MF_0209343, 1, (STRLEN(?templateMotifCigarQ4PNI0MF_0209343) - STRLEN(REPLACE(?templateMotifCigarQ4PNI0MF_0209343, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionQ4PNI044) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ4PNI0MF_0209345, 1, (STRLEN(?targetMotifMatchCigarQ4PNI0MF_0209345) - STRLEN(REPLACE(?targetMotifMatchCigarQ4PNI0MF_0209345, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ4PNI0MF_0209345, 1, (STRLEN(?targetMotifMatchCigarQ4PNI0MF_0209345) - STRLEN(REPLACE(?targetMotifMatchCigarQ4PNI0MF_0209345, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) .
BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0209346) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'H')) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:annotation ?samtransmembrane67 ;
up:sequence ?thisSequence .
?samtransmembrane67 up:range ?samtransmembraner68 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner68 faldo:begin ?samtransmembraneb69 ;
faldo:end ?samtransmembranee70 .
?samtransmembraneb69 faldo:position ?samtransmembranebp71 ;
faldo:reference ?thisSequence .
?samtransmembranee70 faldo:position ?samtransmembraneep72 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam33) .
}
BIND(URI(CONCAT(STR(?this), '#MF_02093a39')) AS ?keyword39) .
BIND(URI(CONCAT(STR(?this), '#MF_02093a40')) AS ?keyword40) .
BIND(URI(CONCAT(STR(?this), '#MF_02093a41')) AS ?keyword41) .
}
"xsd:string |
