| http://purl.uniprot.org/unirules/MF_02098#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:745210 up:source unirule:MF_02098 .
_:745211 up:source unirule:MF_02098 .
_:745212 up:source unirule:MF_02098 .
_:745213 up:source unirule:MF_02098 .
_:745214 up:source unirule:MF_02098 .
_:745215 up:source unirule:MF_02098 .
_:745216 up:source unirule:MF_02098 .
_:745217 up:source unirule:MF_02098 .
_:745218 up:source unirule:MF_02098 .
_:745219 up:source unirule:MF_02098 .
_:745220 up:source unirule:MF_02098 .
_:745221 up:source unirule:MF_02098 .
_:745222 up:source unirule:MF_02098 .
_:745223 up:source unirule:MF_02098 .
_:745224 up:source unirule:MF_02098 .
_:745225 up:source unirule:MF_02098 .
_:745226 up:source unirule:MF_02098 .
_:745227 up:source unirule:MF_02098 .
_:745228 up:source unirule:MF_02098 .
_:745229 up:source unirule:MF_02098 .
_:745230 up:source unirule:MF_02098 .
_:745231 up:source unirule:MF_02098 .
_:745232 up:source unirule:MF_02098 .
_:745233 up:source unirule:MF_02098 .
_:745234 up:source unirule:MF_02098 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0009437 ,
GO:0016709 ,
keyword:285 ,
keyword:288 ,
keyword:520 ,
keyword:521 ,
keyword:560 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.14.13.239' ;
up:fullName 'Carnitine monooxygenase reductase subunit' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Carnitine monooxygenase beta subunit' ;
rdf:type up:Structured_Name .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Converts carnitine to trimethylamine and malic semialdehyde.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:58210 ;
rdf:type up:Cofactor_Annotation .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Amine and polyamine metabolism; carnitine metabolism.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Composed of an oxygenase subunit and a reductase subunit.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the PDR/VanB family. CntB subfamily.' .
?case11 up:classifiedWith GO:0051537 ,
keyword:1 ,
keyword:408 ,
keyword:411 ,
keyword:479 .
?pfs12 up:annotation ?annotation13 ,
?annotation19 ,
?annotation25 ,
?annotation31 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:190135 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:190135 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:190135 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:190135 .
_:745235 a rdf:Statement ;
up:attribution _:745210 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:745236 a rdf:Statement ;
up:attribution _:745211 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:745237 a rdf:Statement ;
up:attribution _:745212 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:745238 a rdf:Statement ;
up:attribution _:745213 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:745239 a rdf:Statement ;
up:attribution _:745214 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:745240 a rdf:Statement ;
up:attribution _:745215 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:745241 a rdf:Statement ;
up:attribution _:745216 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:745242 a rdf:Statement ;
up:attribution _:745217 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:745243 a rdf:Statement ;
up:attribution _:745218 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:745244 a rdf:Statement ;
up:attribution _:745219 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:745245 a rdf:Statement ;
up:attribution _:745220 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:288 .
_:745246 a rdf:Statement ;
up:attribution _:745221 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:745247 a rdf:Statement ;
up:attribution _:745222 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:745248 a rdf:Statement ;
up:attribution _:745223 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:745249 a rdf:Statement ;
up:attribution _:745224 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016709 .
_:745250 a rdf:Statement ;
up:attribution _:745225 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009437 .
_:745251 a rdf:Statement ;
up:attribution _:745226 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1 .
_:745252 a rdf:Statement ;
up:attribution _:745227 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:745253 a rdf:Statement ;
up:attribution _:745228 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:745254 a rdf:Statement ;
up:attribution _:745229 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:745255 a rdf:Statement ;
up:attribution _:745230 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051537 .
_:745256 a rdf:Statement ;
up:source unirule:MF_02098 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:745257 a rdf:Statement ;
up:attribution _:745231 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:745258 a rdf:Statement ;
up:source unirule:MF_02098 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:745259 a rdf:Statement ;
up:attribution _:745232 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:745260 a rdf:Statement ;
up:source unirule:MF_02098 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:745261 a rdf:Statement ;
up:attribution _:745233 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:745262 a rdf:Statement ;
up:source unirule:MF_02098 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:745263 a rdf:Statement ;
up:attribution _:745234 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02098
#Rule MF_02098 Created by:? on:2017-10-31 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02098 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_02098a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02098a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02098a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02098a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02098a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02098a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02098a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_02098a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_02098a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch41 faldo:location ?templateMotifSequenceMatchRegionD0C9N842 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationD0C9N844 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarD0C9N8MF_0209837 .
?templateMotifSequenceMatchRegionD0C9N842 faldo:begin ?templateMotifSequenceMatchBeginD0C9N843 .
?templateMotifSequenceMatchBeginD0C9N843 faldo:position ?templateMotifSequenceMatchBeginPositionD0C9N838 ;
faldo:reference isoform:D0C9N8-1 .
?templateMotifSequenceProfileAlignmentOperationD0C9N844 edam:has_input signature:MF_02098 ;
rdf:type edam:operation_0300 .
?targetMotifMatch45 faldo:location ?targetMotifMatchRegionMatch46 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0209848 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarD0C9N8MF_0209839 .
?targetMotifMatchRegionMatch46 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0209847 .
?targetMotifMatchRegionMatchBeginMF_0209847 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0209840 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0209848 edam:has_input signature:MF_02098 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0C9N8MF_0209837, 1, (STRLEN(?templateMotifCigarD0C9N8MF_0209837) - STRLEN(REPLACE(?templateMotifCigarD0C9N8MF_0209837, CONCAT('^(?:-*[^-]){', STR(((267 - ?templateMotifSequenceMatchBeginPositionD0C9N838) + 1)), '}'), '')))), '[a-z]', '')) AS ?step149) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0C9N8MF_0209839, 1, (STRLEN(?targetMotifMatchCigarD0C9N8MF_0209839) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N8MF_0209839, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0C9N8MF_0209839, 1, (STRLEN(?targetMotifMatchCigarD0C9N8MF_0209839) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N8MF_0209839, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step149), '}'), '')))), '[^-]', ''))) AS ?step250) .
BIND(((?step250 + ?targetMotifMatchRegionMatchBeginPositionMF_0209840) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0C9N8MF_0209837, 1, (STRLEN(?templateMotifCigarD0C9N8MF_0209837) - STRLEN(REPLACE(?templateMotifCigarD0C9N8MF_0209837, CONCAT('^(?:-*[^-]){', STR(((272 - ?templateMotifSequenceMatchBeginPositionD0C9N838) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0C9N8MF_0209839, 1, (STRLEN(?targetMotifMatchCigarD0C9N8MF_0209839) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N8MF_0209839, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0C9N8MF_0209839, 1, (STRLEN(?targetMotifMatchCigarD0C9N8MF_0209839) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N8MF_0209839, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0209840) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0C9N8MF_0209837, 1, (STRLEN(?templateMotifCigarD0C9N8MF_0209837) - STRLEN(REPLACE(?templateMotifCigarD0C9N8MF_0209837, CONCAT('^(?:-*[^-]){', STR(((275 - ?templateMotifSequenceMatchBeginPositionD0C9N838) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0C9N8MF_0209839, 1, (STRLEN(?targetMotifMatchCigarD0C9N8MF_0209839) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N8MF_0209839, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0C9N8MF_0209839, 1, (STRLEN(?targetMotifMatchCigarD0C9N8MF_0209839) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N8MF_0209839, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0209840) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarD0C9N8MF_0209837, 1, (STRLEN(?templateMotifCigarD0C9N8MF_0209837) - STRLEN(REPLACE(?templateMotifCigarD0C9N8MF_0209837, CONCAT('^(?:-*[^-]){', STR(((305 - ?templateMotifSequenceMatchBeginPositionD0C9N838) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarD0C9N8MF_0209839, 1, (STRLEN(?targetMotifMatchCigarD0C9N8MF_0209839) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N8MF_0209839, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarD0C9N8MF_0209839, 1, (STRLEN(?targetMotifMatchCigarD0C9N8MF_0209839) - STRLEN(REPLACE(?targetMotifMatchCigarD0C9N8MF_0209839, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) .
BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0209840) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'C')) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag61) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag61, ?UNBOUND_VARIABLE) AS ?case11) .
}
"xsd:string |
