| http://purl.uniprot.org/unirules/MF_02102#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:746392 up:source unirule:MF_02102 .
_:746393 up:source unirule:MF_02102 .
_:746394 up:source unirule:MF_02102 .
_:746395 up:source unirule:MF_02102 .
_:746396 up:source unirule:MF_02102 .
_:746397 up:source unirule:MF_02102 .
_:746398 up:source unirule:MF_02102 .
_:746399 up:source unirule:MF_02102 .
_:746400 up:source unirule:MF_02102 .
_:746401 up:source unirule:MF_02102 .
_:746402 up:source unirule:MF_02102 .
_:746403 up:source unirule:MF_02102 .
_:746404 up:source unirule:MF_02102 .
_:746405 up:source unirule:MF_02102 .
_:746406 up:source unirule:MF_02102 .
_:746407 up:source unirule:MF_02102 .
_:746408 up:source unirule:MF_02102 .
_:746409 up:source unirule:MF_02102 .
_:746410 up:source unirule:MF_02102 .
_:746411 up:source unirule:MF_02102 .
_:746412 up:source unirule:MF_02102 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation11 ;
up:classifiedWith GO:0033390 ,
GO:0050231 ,
keyword:620 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.3.6' ;
up:fullName 'Putrescine carbamoyltransferase' ;
up:shortName 'PTC' ,
'PTCase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Putrescine transcarbamoylase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Putrescine transcarbamylase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'ptcA' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the phosphorolysis of N-carbamoylputrescine to form carbamoyl phosphate and putrescine. Is involved in the degradation pathway of the polyamine agmatine.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Amine and polyamine biosynthesis; putrescine biosynthesis via agmatine pathway; putrescine from N-carbamoylputrescine (transferase route): step 1/1.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Homotrimer.' .
?annotation9 a up:Subcellular_Location_Annotation .
?annotation9li10 up:cellularComponent .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the aspartate/ornithine carbamoyltransferase superfamily. PTCase family.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:58228 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:326268 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:58228 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:58228 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for structural integrity' .
?pfsb42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for structural integrity' .
?pfsb48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
_:746413 a rdf:Statement ;
up:attribution _:746392 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:746414 a rdf:Statement ;
up:attribution _:746393 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:746415 a rdf:Statement ;
up:attribution _:746394 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:746416 a rdf:Statement ;
up:attribution _:746395 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:746417 a rdf:Statement ;
up:attribution _:746396 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:746418 a rdf:Statement ;
up:attribution _:746397 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:746419 a rdf:Statement ;
up:attribution _:746398 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:746420 a rdf:Statement ;
up:attribution _:746399 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:746421 a rdf:Statement ;
up:attribution _:746400 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:746422 a rdf:Statement ;
up:attribution _:746401 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:746423 a rdf:Statement ;
up:attribution _:746402 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:746424 a rdf:Statement ;
up:attribution _:746403 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:620 .
_:746425 a rdf:Statement ;
up:attribution _:746404 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:746426 a rdf:Statement ;
up:attribution _:746405 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050231 .
_:746427 a rdf:Statement ;
up:attribution _:746406 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0033390 .
_:746428 a rdf:Statement ;
up:source unirule:MF_02102 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:746429 a rdf:Statement ;
up:attribution _:746407 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:746430 a rdf:Statement ;
up:source unirule:MF_02102 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:746431 a rdf:Statement ;
up:attribution _:746408 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:746432 a rdf:Statement ;
up:source unirule:MF_02102 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:746433 a rdf:Statement ;
up:attribution _:746409 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:746434 a rdf:Statement ;
up:source unirule:MF_02102 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:746435 a rdf:Statement ;
up:attribution _:746410 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:746436 a rdf:Statement ;
up:source unirule:MF_02102 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:746437 a rdf:Statement ;
up:attribution _:746411 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:746438 a rdf:Statement ;
up:source unirule:MF_02102 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:746439 a rdf:Statement ;
up:attribution _:746412 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02102
#Rule MF_02102 Created by:? on:2009-07-07 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon52 {taxon:1239 taxon:544448}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02102 .
?thisOrganism rdfs:subClassOf+ ?supertaxon52 .
BIND(URI(CONCAT(STR(?this), '#MF_02102a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02102a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02102a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_02102a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02102a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02102a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02102a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_02102a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_02102a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch57 faldo:location ?templateMotifSequenceMatchRegionQ837U758 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837U760 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ837U7MF_0210253 .
?templateMotifSequenceMatchRegionQ837U758 faldo:begin ?templateMotifSequenceMatchBeginQ837U759 .
?templateMotifSequenceMatchBeginQ837U759 faldo:position ?templateMotifSequenceMatchBeginPositionQ837U754 ;
faldo:reference isoform:Q837U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ837U760 edam:has_input signature:MF_02102 ;
rdf:type edam:operation_0300 .
?targetMotifMatch61 faldo:location ?targetMotifMatchRegionMatch62 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0210264 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ837U7MF_0210255 .
?targetMotifMatchRegionMatch62 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0210263 .
?targetMotifMatchRegionMatchBeginMF_0210263 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0210256 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0210264 edam:has_input signature:MF_02102 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837U7MF_0210253, 1, (STRLEN(?templateMotifCigarQ837U7MF_0210253) - STRLEN(REPLACE(?templateMotifCigarQ837U7MF_0210253, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionQ837U754) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837U7MF_0210255, 1, (STRLEN(?targetMotifMatchCigarQ837U7MF_0210255) - STRLEN(REPLACE(?targetMotifMatchCigarQ837U7MF_0210255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837U7MF_0210255, 1, (STRLEN(?targetMotifMatchCigarQ837U7MF_0210255) - STRLEN(REPLACE(?targetMotifMatchCigarQ837U7MF_0210255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0210256) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837U7MF_0210253, 1, (STRLEN(?templateMotifCigarQ837U7MF_0210253) - STRLEN(REPLACE(?templateMotifCigarQ837U7MF_0210253, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionQ837U754) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837U7MF_0210255, 1, (STRLEN(?targetMotifMatchCigarQ837U7MF_0210255) - STRLEN(REPLACE(?targetMotifMatchCigarQ837U7MF_0210255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837U7MF_0210255, 1, (STRLEN(?targetMotifMatchCigarQ837U7MF_0210255) - STRLEN(REPLACE(?targetMotifMatchCigarQ837U7MF_0210255, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0210256) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)) = 'STRTR')) .
BIND(URI(CONCAT(STR(?this), '#MF_02102a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch74 faldo:location ?templateMotifSequenceMatchRegionQ837U775 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837U777 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ837U7MF_0210270 .
?templateMotifSequenceMatchRegionQ837U775 faldo:begin ?templateMotifSequenceMatchBeginQ837U776 .
?templateMotifSequenceMatchBeginQ837U776 faldo:position ?templateMotifSequenceMatchBeginPositionQ837U771 ;
faldo:reference isoform:Q837U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ837U777 edam:has_input signature:MF_02102 ;
rdf:type edam:operation_0300 .
?targetMotifMatch78 faldo:location ?targetMotifMatchRegionMatch79 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0210281 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ837U7MF_0210272 .
?targetMotifMatchRegionMatch79 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0210280 .
?targetMotifMatchRegionMatchBeginMF_0210280 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0210273 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0210281 edam:has_input signature:MF_02102 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837U7MF_0210270, 1, (STRLEN(?templateMotifCigarQ837U7MF_0210270) - STRLEN(REPLACE(?templateMotifCigarQ837U7MF_0210270, CONCAT('^(?:-*[^-]){', STR(((268 - ?templateMotifSequenceMatchBeginPositionQ837U771) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837U7MF_0210272, 1, (STRLEN(?targetMotifMatchCigarQ837U7MF_0210272) - STRLEN(REPLACE(?targetMotifMatchCigarQ837U7MF_0210272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837U7MF_0210272, 1, (STRLEN(?targetMotifMatchCigarQ837U7MF_0210272) - STRLEN(REPLACE(?targetMotifMatchCigarQ837U7MF_0210272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0210273) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837U7MF_0210270, 1, (STRLEN(?templateMotifCigarQ837U7MF_0210270) - STRLEN(REPLACE(?templateMotifCigarQ837U7MF_0210270, CONCAT('^(?:-*[^-]){', STR(((271 - ?templateMotifSequenceMatchBeginPositionQ837U771) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837U7MF_0210272, 1, (STRLEN(?targetMotifMatchCigarQ837U7MF_0210272) - STRLEN(REPLACE(?targetMotifMatchCigarQ837U7MF_0210272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837U7MF_0210272, 1, (STRLEN(?targetMotifMatchCigarQ837U7MF_0210272) - STRLEN(REPLACE(?targetMotifMatchCigarQ837U7MF_0210272, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0210273) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, (?thisPositionOn25 - ?thisPositionOn24)) = 'HCLP')) .
BIND(URI(CONCAT(STR(?this), '#MF_02102a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch91 faldo:location ?templateMotifSequenceMatchRegionQ837U792 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837U794 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ837U7MF_0210287 .
?templateMotifSequenceMatchRegionQ837U792 faldo:begin ?templateMotifSequenceMatchBeginQ837U793 .
?templateMotifSequenceMatchBeginQ837U793 faldo:position ?templateMotifSequenceMatchBeginPositionQ837U788 ;
faldo:reference isoform:Q837U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ837U794 edam:has_input signature:MF_02102 ;
rdf:type edam:operation_0300 .
?targetMotifMatch95 faldo:location ?targetMotifMatchRegionMatch96 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0210298 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ837U7MF_0210289 .
?targetMotifMatchRegionMatch96 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0210297 .
?targetMotifMatchRegionMatchBeginMF_0210297 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0210290 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0210298 edam:has_input signature:MF_02102 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837U7MF_0210287, 1, (STRLEN(?templateMotifCigarQ837U7MF_0210287) - STRLEN(REPLACE(?templateMotifCigarQ837U7MF_0210287, CONCAT('^(?:-*[^-]){', STR(((103 - ?templateMotifSequenceMatchBeginPositionQ837U788) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837U7MF_0210289, 1, (STRLEN(?targetMotifMatchCigarQ837U7MF_0210289) - STRLEN(REPLACE(?targetMotifMatchCigarQ837U7MF_0210289, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837U7MF_0210289, 1, (STRLEN(?targetMotifMatchCigarQ837U7MF_0210289) - STRLEN(REPLACE(?targetMotifMatchCigarQ837U7MF_0210289, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0210290) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02102a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch106 faldo:location ?templateMotifSequenceMatchRegionQ837U7107 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837U7109 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ837U7MF_02102102 .
?templateMotifSequenceMatchRegionQ837U7107 faldo:begin ?templateMotifSequenceMatchBeginQ837U7108 .
?templateMotifSequenceMatchBeginQ837U7108 faldo:position ?templateMotifSequenceMatchBeginPositionQ837U7103 ;
faldo:reference isoform:Q837U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ837U7109 edam:has_input signature:MF_02102 ;
rdf:type edam:operation_0300 .
?targetMotifMatch110 faldo:location ?targetMotifMatchRegionMatch111 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02102113 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ837U7MF_02102104 .
?targetMotifMatchRegionMatch111 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02102112 .
?targetMotifMatchRegionMatchBeginMF_02102112 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02102105 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02102113 edam:has_input signature:MF_02102 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837U7MF_02102102, 1, (STRLEN(?templateMotifCigarQ837U7MF_02102102) - STRLEN(REPLACE(?templateMotifCigarQ837U7MF_02102102, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionQ837U7103) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1114) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837U7MF_02102104, 1, (STRLEN(?targetMotifMatchCigarQ837U7MF_02102104) - STRLEN(REPLACE(?targetMotifMatchCigarQ837U7MF_02102104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837U7MF_02102104, 1, (STRLEN(?targetMotifMatchCigarQ837U7MF_02102104) - STRLEN(REPLACE(?targetMotifMatchCigarQ837U7MF_02102104, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1114), '}'), '')))), '[^-]', ''))) AS ?step2115) .
BIND(((?step2115 + ?targetMotifMatchRegionMatchBeginPositionMF_02102105) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t116) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_02102a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch121 faldo:location ?templateMotifSequenceMatchRegionQ837U7122 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837U7124 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ837U7MF_02102117 .
?templateMotifSequenceMatchRegionQ837U7122 faldo:begin ?templateMotifSequenceMatchBeginQ837U7123 .
?templateMotifSequenceMatchBeginQ837U7123 faldo:position ?templateMotifSequenceMatchBeginPositionQ837U7118 ;
faldo:reference isoform:Q837U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ837U7124 edam:has_input signature:MF_02102 ;
rdf:type edam:operation_0300 .
?targetMotifMatch125 faldo:location ?targetMotifMatchRegionMatch126 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02102128 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ837U7MF_02102119 .
?targetMotifMatchRegionMatch126 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02102127 .
?targetMotifMatchRegionMatchBeginMF_02102127 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02102120 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02102128 edam:has_input signature:MF_02102 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837U7MF_02102117, 1, (STRLEN(?templateMotifCigarQ837U7MF_02102117) - STRLEN(REPLACE(?templateMotifCigarQ837U7MF_02102117, CONCAT('^(?:-*[^-]){', STR(((27 - ?templateMotifSequenceMatchBeginPositionQ837U7118) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1129) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837U7MF_02102119, 1, (STRLEN(?targetMotifMatchCigarQ837U7MF_02102119) - STRLEN(REPLACE(?targetMotifMatchCigarQ837U7MF_02102119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837U7MF_02102119, 1, (STRLEN(?targetMotifMatchCigarQ837U7MF_02102119) - STRLEN(REPLACE(?targetMotifMatchCigarQ837U7MF_02102119, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1129), '}'), '')))), '[^-]', ''))) AS ?step2130) .
BIND(((?step2130 + ?targetMotifMatchRegionMatchBeginPositionMF_02102120) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t131) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02102a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch136 faldo:location ?templateMotifSequenceMatchRegionQ837U7137 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ837U7139 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ837U7MF_02102132 .
?templateMotifSequenceMatchRegionQ837U7137 faldo:begin ?templateMotifSequenceMatchBeginQ837U7138 .
?templateMotifSequenceMatchBeginQ837U7138 faldo:position ?templateMotifSequenceMatchBeginPositionQ837U7133 ;
faldo:reference isoform:Q837U7-1 .
?templateMotifSequenceProfileAlignmentOperationQ837U7139 edam:has_input signature:MF_02102 ;
rdf:type edam:operation_0300 .
?targetMotifMatch140 faldo:location ?targetMotifMatchRegionMatch141 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02102143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ837U7MF_02102134 .
?targetMotifMatchRegionMatch141 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02102142 .
?targetMotifMatchRegionMatchBeginMF_02102142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02102135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02102143 edam:has_input signature:MF_02102 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ837U7MF_02102132, 1, (STRLEN(?templateMotifCigarQ837U7MF_02102132) - STRLEN(REPLACE(?templateMotifCigarQ837U7MF_02102132, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionQ837U7133) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ837U7MF_02102134, 1, (STRLEN(?targetMotifMatchCigarQ837U7MF_02102134) - STRLEN(REPLACE(?targetMotifMatchCigarQ837U7MF_02102134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ837U7MF_02102134, 1, (STRLEN(?targetMotifMatchCigarQ837U7MF_02102134) - STRLEN(REPLACE(?targetMotifMatchCigarQ837U7MF_02102134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1144), '}'), '')))), '[^-]', ''))) AS ?step2145) .
BIND(((?step2145 + ?targetMotifMatchRegionMatchBeginPositionMF_02102135) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t146) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_02102a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
}
"xsd:string |
