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| Subject | Predicate | Object |
|---|---|---|
| http://purl.uniprot.org/unirules/MF_02106#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02106#construct-template-112 |
| http://purl.uniprot.org/unirules/MF_02106#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02106#construct-template-111 |
| http://purl.uniprot.org/unirules/MF_02106#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02106#construct-template-118 |
| http://purl.uniprot.org/unirules/MF_02106#construct | https://hamap.expasy.org/rdf/vocab#addsTriple | http://purl.uniprot.org/unirules/MF_02106#construct-template-116 |
| http://purl.uniprot.org/unirules/MF_02106#construct | http://www.w3.org/ns/shacl#prefixes | http://purl.uniprot.org/unirules/ |
| http://purl.uniprot.org/unirules/MF_02106#construct | http://spinrdf.org/sp#where | http://purl.uniprot.org/unirules/MF_02106#construct-where-list-0 |
| http://purl.uniprot.org/unirules/MF_02106#construct | http://spinrdf.org/sp#templates | http://purl.uniprot.org/unirules/MF_02106#construct-template-list-0 |
| http://purl.uniprot.org/unirules/MF_02106#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT { _:747471 up:source unirule:MF_02106 . _:747472 up:source unirule:MF_02106 . _:747473 up:source unirule:MF_02106 . _:747474 up:source unirule:MF_02106 . _:747475 up:source unirule:MF_02106 . _:747476 up:source unirule:MF_02106 . _:747477 up:source unirule:MF_02106 . _:747478 up:source unirule:MF_02106 . _:747479 up:source unirule:MF_02106 . _:747480 up:source unirule:MF_02106 . _:747481 up:source unirule:MF_02106 . _:747482 up:source unirule:MF_02106 . _:747483 up:source unirule:MF_02106 . _:747484 up:source unirule:MF_02106 . _:747485 up:source unirule:MF_02106 . _:747486 up:source unirule:MF_02106 . _:747487 up:source unirule:MF_02106 . _:747488 up:source unirule:MF_02106 . _:747489 up:source unirule:MF_02106 . _:747490 up:source unirule:MF_02106 . _:747491 up:source unirule:MF_02106 . ?this up:alternativeName ?name1 ; up:annotation ?annotation3 , ?annotation4 , ?annotation5 , ?annotation6 , ?annotation7 ; up:classifiedWith GO:0010498 , GO:0019941 , GO:0031386 , GO:0070490 , GO:0070628 , keyword:1017 , keyword:833 ; up:recommendedName ?name0 . ?name0 up:fullName 'Prokaryotic ubiquitin-like protein Pup' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Bacterial ubiquitin-like modifier' ; rdf:type up:Structured_Name . ?gene2 skos:prefLabel 'pup' . ?annotation3 a up:Function_Annotation ; rdfs:comment 'Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation.' . ?annotation4 a up:Pathway_Annotation ; rdfs:comment 'Protein degradation; proteasomal Pup-dependent pathway.' . ?annotation5 a up:Subunit_Annotation ; rdfs:comment 'Strongly interacts with the proteasome-associated ATPase ARC through a hydrophobic interface; the interacting region of Pup lies in its C-terminal half. There is one Pup binding site per ARC hexamer ring.' . ?annotation6 a up:Domain_Annotation ; rdfs:comment 'The N-terminal unstructured half of Pup provides a signal required to initiate unfolding and degradation by the proteasome but is not needed for pupylation, while the C-terminal helical half of Pup interacts with ARC to target proteins to the proteasome.' . ?annotation7 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the prokaryotic ubiquitin-like protein family.' . ?pfs9 up:annotation ?annotation10 . ?annotation10 faldo:begin ?pfsb11 ; faldo:end ?pfse12 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Deamidated glutamine' . ?pfsb11 faldo:position ?thisPositionOn13 ; rdf:type faldo:ExactPosition . ?pfse12 faldo:position ?thisPositionOn14 ; rdf:type faldo:ExactPosition . ?pfs15 up:annotation ?annotation16 . ?annotation16 faldo:begin ?pfsb17 ; faldo:end ?pfse18 ; rdf:type up:Modified_Residue_Annotation ; rdfs:comment 'Deamidated glutamine' . ?pfsb17 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse18 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?pfs21 up:annotation ?annotation22 . ?annotation22 faldo:begin ?pfsb23 ; faldo:end ?pfse24 ; rdf:type up:Region_Annotation ; rdfs:comment 'ARC ATPase binding' . ?pfsb23 faldo:position ?thisPositionOn25 ; rdf:type faldo:ExactPosition . ?pfse24 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfs27 up:annotation ?annotation28 . ?annotation28 faldo:begin ?pfsb29 ; faldo:end ?pfse30 ; rdf:type up:Cross-link_Annotation ; rdfs:comment 'Isoglutamyl lysine isopeptide (Gln-Lys) (interchain with K-? in acceptor proteins)' . ?pfsb29 faldo:position ?thisPositionOn31 ; rdf:type faldo:ExactPosition . ?pfse30 faldo:position ?thisPositionOn32 ; rdf:type faldo:ExactPosition . ?pfs33 up:annotation ?annotation34 . ?annotation34 faldo:begin ?pfsb35 ; faldo:end ?pfse36 ; rdf:type up:Cross-link_Annotation ; rdfs:comment 'Isoglutamyl lysine isopeptide (Glu-Lys) (interchain with K-? in acceptor proteins)' . ?pfsb35 faldo:position ?thisPositionOn37 ; rdf:type faldo:ExactPosition . ?pfse36 faldo:position ?thisPositionOn38 ; rdf:type faldo:ExactPosition . ?sam39 up:classifiedWith keyword:175 . ?coiledCoil40 faldo:begin ?coiledCoilb41 ; faldo:end ?coiledCoile42 . ?coiledCoilb41 faldo:position ?coiledCoilbp43 . ?coiledCoile42 faldo:position ?coiledCoilep44 . ?keyword45 up:range ?coiledCoil40 . _:747492 a rdf:Statement ; up:attribution _:747471 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:747493 a rdf:Statement ; up:attribution _:747472 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:747494 a rdf:Statement ; up:attribution _:747473 ; rdf:subject ?gene2 ; rdf:predicate up:encodedBy ; rdf:object ?gene2 . _:747495 a rdf:Statement ; up:attribution _:747474 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation3 . _:747496 a rdf:Statement ; up:attribution _:747475 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation4 . _:747497 a rdf:Statement ; up:attribution _:747476 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:747498 a rdf:Statement ; up:attribution _:747477 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:747499 a rdf:Statement ; up:attribution _:747478 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:747500 a rdf:Statement ; up:attribution _:747479 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:1017 . _:747501 a rdf:Statement ; up:attribution _:747480 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:833 . _:747502 a rdf:Statement ; up:attribution _:747481 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0031386 . _:747503 a rdf:Statement ; up:attribution _:747482 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0070628 . _:747504 a rdf:Statement ; up:attribution _:747483 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0010498 . _:747505 a rdf:Statement ; up:attribution _:747484 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0019941 . _:747506 a rdf:Statement ; up:attribution _:747485 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0070490 . _:747507 a rdf:Statement ; up:source unirule:MF_02106 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:747508 a rdf:Statement ; up:attribution _:747486 ; rdf:subject ?pfs9 ; rdf:predicate up:annotation ; rdf:object ?annotation10 . _:747509 a rdf:Statement ; up:source unirule:MF_02106 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:747510 a rdf:Statement ; up:attribution _:747487 ; rdf:subject ?pfs15 ; rdf:predicate up:annotation ; rdf:object ?annotation16 . _:747511 a rdf:Statement ; up:source unirule:MF_02106 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:747512 a rdf:Statement ; up:attribution _:747488 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:747513 a rdf:Statement ; up:source unirule:MF_02106 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:747514 a rdf:Statement ; up:attribution _:747489 ; rdf:subject ?pfs27 ; rdf:predicate up:annotation ; rdf:object ?annotation28 . _:747515 a rdf:Statement ; up:source unirule:MF_02106 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:747516 a rdf:Statement ; up:attribution _:747490 ; rdf:subject ?pfs33 ; rdf:predicate up:annotation ; rdf:object ?annotation34 . _:747517 a rdf:Statement ; up:attribution _:747491 ; rdf:subject ?sam39 ; rdf:predicate up:classifiedWith ; rdf:object keyword:175 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_02106 #Rule MF_02106 Created by:? on:2009-12-07 Modified by:Catherine Rivoire on:2023-07-27 ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_02106 . ?thisOrganism rdfs:subClassOf+ taxon:201174 . BIND(URI(CONCAT(STR(?this), '#MF_02106a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_02106a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_02106a3')) AS ?annotation3) . BIND(URI(CONCAT(STR(?this), '#MF_02106a4')) AS ?annotation4) . BIND(URI(CONCAT(STR(?this), '#MF_02106a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_02106a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_02106a7')) AS ?annotation7) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch50 faldo:location ?templateMotifSequenceMatchRegionP9WHN551 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WHN553 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WHN5MF_0210646 . ?templateMotifSequenceMatchRegionP9WHN551 faldo:begin ?templateMotifSequenceMatchBeginP9WHN552 . ?templateMotifSequenceMatchBeginP9WHN552 faldo:position ?templateMotifSequenceMatchBeginPositionP9WHN547 ; faldo:reference isoform:P9WHN5-1 . ?templateMotifSequenceProfileAlignmentOperationP9WHN553 edam:has_input signature:MF_02106 ; rdf:type edam:operation_0300 . ?targetMotifMatch54 faldo:location ?targetMotifMatchRegionMatch55 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0210657 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WHN5MF_0210648 . ?targetMotifMatchRegionMatch55 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0210656 . ?targetMotifMatchRegionMatchBeginMF_0210656 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0210649 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0210657 edam:has_input signature:MF_02106 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagdeamidation) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WHN5MF_0210646, 1, (STRLEN(?templateMotifCigarP9WHN5MF_0210646) - STRLEN(REPLACE(?templateMotifCigarP9WHN5MF_0210646, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP9WHN547) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WHN5MF_0210648, 1, (STRLEN(?targetMotifMatchCigarP9WHN5MF_0210648) - STRLEN(REPLACE(?targetMotifMatchCigarP9WHN5MF_0210648, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WHN5MF_0210648, 1, (STRLEN(?targetMotifMatchCigarP9WHN5MF_0210648) - STRLEN(REPLACE(?targetMotifMatchCigarP9WHN5MF_0210648, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) . BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0210649) - 1) AS ?thisPositionOn13) . BIND(?thisPositionOn13 AS ?thisPositionOn14) . BIND(?this AS ?pfs1t60) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_02106a10')) AS ?annotation10) . BIND(?this AS ?pfs9) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch65 faldo:location ?templateMotifSequenceMatchRegionP9WHN566 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WHN568 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WHN5MF_0210661 . ?templateMotifSequenceMatchRegionP9WHN566 faldo:begin ?templateMotifSequenceMatchBeginP9WHN567 . ?templateMotifSequenceMatchBeginP9WHN567 faldo:position ?templateMotifSequenceMatchBeginPositionP9WHN562 ; faldo:reference isoform:P9WHN5-1 . ?templateMotifSequenceProfileAlignmentOperationP9WHN568 edam:has_input signature:MF_02106 ; rdf:type edam:operation_0300 . ?targetMotifMatch69 faldo:location ?targetMotifMatchRegionMatch70 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0210672 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WHN5MF_0210663 . ?targetMotifMatchRegionMatch70 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0210671 . ?targetMotifMatchRegionMatchBeginMF_0210671 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0210664 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0210672 edam:has_input signature:MF_02106 ; rdf:type edam:operation_0300 . BIND(?this AS ?tagFT_2) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WHN5MF_0210661, 1, (STRLEN(?templateMotifCigarP9WHN5MF_0210661) - STRLEN(REPLACE(?templateMotifCigarP9WHN5MF_0210661, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP9WHN562) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WHN5MF_0210663, 1, (STRLEN(?targetMotifMatchCigarP9WHN5MF_0210663) - STRLEN(REPLACE(?targetMotifMatchCigarP9WHN5MF_0210663, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WHN5MF_0210663, 1, (STRLEN(?targetMotifMatchCigarP9WHN5MF_0210663) - STRLEN(REPLACE(?targetMotifMatchCigarP9WHN5MF_0210663, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) . BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0210664) - 1) AS ?thisPositionOn19) . BIND(?thisPositionOn19 AS ?thisPositionOn20) . BIND(?this AS ?pfs2t75) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'Q')) . BIND(URI(CONCAT(STR(?this), '#MF_02106a16')) AS ?annotation16) . BIND(?this AS ?pfs15) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionP9WHN581 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WHN583 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WHN5MF_0210676 . ?templateMotifSequenceMatchRegionP9WHN581 faldo:begin ?templateMotifSequenceMatchBeginP9WHN582 . ?templateMotifSequenceMatchBeginP9WHN582 faldo:position ?templateMotifSequenceMatchBeginPositionP9WHN577 ; faldo:reference isoform:P9WHN5-1 . ?templateMotifSequenceProfileAlignmentOperationP9WHN583 edam:has_input signature:MF_02106 ; rdf:type edam:operation_0300 . ?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0210687 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WHN5MF_0210678 . ?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0210686 . ?targetMotifMatchRegionMatchBeginMF_0210686 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0210679 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0210687 edam:has_input signature:MF_02106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WHN5MF_0210676, 1, (STRLEN(?templateMotifCigarP9WHN5MF_0210676) - STRLEN(REPLACE(?templateMotifCigarP9WHN5MF_0210676, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP9WHN577) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WHN5MF_0210678, 1, (STRLEN(?targetMotifMatchCigarP9WHN5MF_0210678) - STRLEN(REPLACE(?targetMotifMatchCigarP9WHN5MF_0210678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WHN5MF_0210678, 1, (STRLEN(?targetMotifMatchCigarP9WHN5MF_0210678) - STRLEN(REPLACE(?targetMotifMatchCigarP9WHN5MF_0210678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) . BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0210679) - 1) AS ?thisPositionOn25) . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WHN5MF_0210676, 1, (STRLEN(?templateMotifCigarP9WHN5MF_0210676) - STRLEN(REPLACE(?templateMotifCigarP9WHN5MF_0210676, CONCAT('^(?:-*[^-]){', STR(((58 - ?templateMotifSequenceMatchBeginPositionP9WHN577) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WHN5MF_0210678, 1, (STRLEN(?targetMotifMatchCigarP9WHN5MF_0210678) - STRLEN(REPLACE(?targetMotifMatchCigarP9WHN5MF_0210678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WHN5MF_0210678, 1, (STRLEN(?targetMotifMatchCigarP9WHN5MF_0210678) - STRLEN(REPLACE(?targetMotifMatchCigarP9WHN5MF_0210678, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) . BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0210679) - 1) AS ?thisPositionOn26) . BIND(?this AS ?pfs3t92) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) . FILTER ((BOUND(?thisPositionOn25) && BOUND(?thisPositionOn26))) . BIND(URI(CONCAT(STR(?this), '#MF_02106a22')) AS ?annotation22) . BIND(?this AS ?pfs21) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionP9WHN598 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WHN5100 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WHN5MF_0210693 . ?templateMotifSequenceMatchRegionP9WHN598 faldo:begin ?templateMotifSequenceMatchBeginP9WHN599 . ?templateMotifSequenceMatchBeginP9WHN599 faldo:position ?templateMotifSequenceMatchBeginPositionP9WHN594 ; faldo:reference isoform:P9WHN5-1 . ?templateMotifSequenceProfileAlignmentOperationP9WHN5100 edam:has_input signature:MF_02106 ; rdf:type edam:operation_0300 . ?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02106104 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WHN5MF_0210695 . ?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02106103 . ?targetMotifMatchRegionMatchBeginMF_02106103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0210696 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02106104 edam:has_input signature:MF_02106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WHN5MF_0210693, 1, (STRLEN(?templateMotifCigarP9WHN5MF_0210693) - STRLEN(REPLACE(?templateMotifCigarP9WHN5MF_0210693, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP9WHN594) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WHN5MF_0210695, 1, (STRLEN(?targetMotifMatchCigarP9WHN5MF_0210695) - STRLEN(REPLACE(?targetMotifMatchCigarP9WHN5MF_0210695, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WHN5MF_0210695, 1, (STRLEN(?targetMotifMatchCigarP9WHN5MF_0210695) - STRLEN(REPLACE(?targetMotifMatchCigarP9WHN5MF_0210695, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) . BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0210696) - 1) AS ?thisPositionOn31) . BIND(?thisPositionOn31 AS ?thisPositionOn32) . BIND(?this AS ?pfs4t107) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) . FILTER (REGEX('[Q]', SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02106a28')) AS ?annotation28) . BIND(?this AS ?pfs27) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionP9WHN5113 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP9WHN5115 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP9WHN5MF_02106108 . ?templateMotifSequenceMatchRegionP9WHN5113 faldo:begin ?templateMotifSequenceMatchBeginP9WHN5114 . ?templateMotifSequenceMatchBeginP9WHN5114 faldo:position ?templateMotifSequenceMatchBeginPositionP9WHN5109 ; faldo:reference isoform:P9WHN5-1 . ?templateMotifSequenceProfileAlignmentOperationP9WHN5115 edam:has_input signature:MF_02106 ; rdf:type edam:operation_0300 . ?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02106119 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP9WHN5MF_02106110 . ?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02106118 . ?targetMotifMatchRegionMatchBeginMF_02106118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02106111 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_02106119 edam:has_input signature:MF_02106 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP9WHN5MF_02106108, 1, (STRLEN(?templateMotifCigarP9WHN5MF_02106108) - STRLEN(REPLACE(?templateMotifCigarP9WHN5MF_02106108, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionP9WHN5109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP9WHN5MF_02106110, 1, (STRLEN(?targetMotifMatchCigarP9WHN5MF_02106110) - STRLEN(REPLACE(?targetMotifMatchCigarP9WHN5MF_02106110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP9WHN5MF_02106110, 1, (STRLEN(?targetMotifMatchCigarP9WHN5MF_02106110) - STRLEN(REPLACE(?targetMotifMatchCigarP9WHN5MF_02106110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) . BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_02106111) - 1) AS ?thisPositionOn37) . BIND(?thisPositionOn37 AS ?thisPositionOn38) . BIND(?this AS ?pfs5t122) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) . FILTER (REGEX('[E]', SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1))) . BIND(URI(CONCAT(STR(?this), '#MF_02106a34')) AS ?annotation34) . BIND(?this AS ?pfs33) . } OPTIONAL { ?this a up:Protein . BIND(?this AS ?caseWithTag123) . } BIND(IF(BOUND(?tagdeamidation), ?caseWithTag123, ?UNBOUND_VARIABLE) AS ?case8) . OPTIONAL { ?this up:annotation ?samcc124 ; up:sequence ?thisSequence . ?samcc124 up:range ?samccr125 ; rdf:type up:Coiled_Coil_Annotation . ?samccr125 faldo:begin ?samccb126 ; faldo:end ?samcce127 . ?samccb126 faldo:position ?samccbp128 ; faldo:reference ?thisSequence . ?samcce127 faldo:position ?samccep129 ; faldo:reference ?thisSequence . BIND(?this AS ?sam39) . } BIND(URI(CONCAT(STR(?this), '#MF_02106a45')) AS ?keyword45) . } "xsd:string |
| http://purl.uniprot.org/unirules/MF_02106 | http://www.w3.org/ns/shacl#rule | http://purl.uniprot.org/unirules/MF_02106#construct |