| http://purl.uniprot.org/unirules/MF_02115#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:750510 up:source unirule:MF_02115 .
_:750511 up:source unirule:MF_02115 .
_:750512 up:source unirule:MF_02115 .
_:750513 up:source unirule:MF_02115 .
_:750514 up:source unirule:MF_02115 .
_:750515 up:source unirule:MF_02115 .
_:750516 up:source unirule:MF_02115 .
_:750517 up:source unirule:MF_02115 .
_:750518 up:source unirule:MF_02115 .
_:750519 up:source unirule:MF_02115 .
_:750520 up:source unirule:MF_02115 .
_:750521 up:source unirule:MF_02115 .
_:750522 up:source unirule:MF_02115 .
_:750523 up:source unirule:MF_02115 .
_:750524 up:source unirule:MF_02115 .
_:750525 up:source unirule:MF_02115 .
_:750526 up:source unirule:MF_02115 .
_:750527 up:source unirule:MF_02115 .
_:750528 up:source unirule:MF_02115 .
_:750529 up:source unirule:MF_02115 .
_:750530 up:source unirule:MF_02115 .
_:750531 up:source unirule:MF_02115 .
_:750532 up:source unirule:MF_02115 .
_:750533 up:source unirule:MF_02115 .
_:750534 up:source unirule:MF_02115 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation10 ;
up:classifiedWith GO:0003919 ,
GO:0005524 ,
GO:0006747 ,
GO:0046444 ,
keyword:274 ,
keyword:285 ,
keyword:288 ,
keyword:547 ,
keyword:548 ,
keyword:67 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.7.2' ;
up:fullName 'FAD synthase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'FMN adenylyltransferase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Flavin adenine dinucleotide synthase' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'ribL' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the transfer of the AMP portion of ATP to flavin mononucleotide (FMN) to produce flavin adenine dinucleotide (FAD) coenzyme.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:cofactor chebi:60240 ;
rdf:type up:Cofactor_Annotation .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; FAD biosynthesis; FAD from FMN: step 1/1.' .
?annotation9 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the archaeal FAD synthase family.' .
?pfs11 up:annotation ?annotation12 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:30616 .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:30616 .
?pfs25 up:annotation ?annotation26 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:30616 .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:30616 .
_:750535 a rdf:Statement ;
up:attribution _:750510 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:750536 a rdf:Statement ;
up:attribution _:750511 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:750537 a rdf:Statement ;
up:attribution _:750512 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:750538 a rdf:Statement ;
up:attribution _:750513 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:750539 a rdf:Statement ;
up:attribution _:750514 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:750540 a rdf:Statement ;
up:attribution _:750515 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:750541 a rdf:Statement ;
up:attribution _:750516 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:750542 a rdf:Statement ;
up:attribution _:750517 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:750543 a rdf:Statement ;
up:attribution _:750518 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:750544 a rdf:Statement ;
up:attribution _:750519 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:750545 a rdf:Statement ;
up:attribution _:750520 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:750546 a rdf:Statement ;
up:attribution _:750521 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:274 .
_:750547 a rdf:Statement ;
up:attribution _:750522 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:750548 a rdf:Statement ;
up:attribution _:750523 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:288 .
_:750549 a rdf:Statement ;
up:attribution _:750524 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:750550 a rdf:Statement ;
up:attribution _:750525 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:750551 a rdf:Statement ;
up:attribution _:750526 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:750552 a rdf:Statement ;
up:attribution _:750527 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003919 .
_:750553 a rdf:Statement ;
up:attribution _:750528 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:750554 a rdf:Statement ;
up:attribution _:750529 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006747 .
_:750555 a rdf:Statement ;
up:attribution _:750530 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046444 .
_:750556 a rdf:Statement ;
up:source unirule:MF_02115 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:750557 a rdf:Statement ;
up:attribution _:750531 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:750558 a rdf:Statement ;
up:source unirule:MF_02115 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:750559 a rdf:Statement ;
up:attribution _:750532 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:750560 a rdf:Statement ;
up:source unirule:MF_02115 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:750561 a rdf:Statement ;
up:attribution _:750533 ;
rdf:subject ?pfs25 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:750562 a rdf:Statement ;
up:source unirule:MF_02115 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:750563 a rdf:Statement ;
up:attribution _:750534 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02115
#Rule MF_02115 Created by:? on:2011-02-16 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02115 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_02115a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02115a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02115a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_02115a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02115a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02115a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02115a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_02115a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_02115a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch43 faldo:location ?templateMotifSequenceMatchRegionQ979C244 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ979C246 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ979C2MF_0211539 .
?templateMotifSequenceMatchRegionQ979C244 faldo:begin ?templateMotifSequenceMatchBeginQ979C245 .
?templateMotifSequenceMatchBeginQ979C245 faldo:position ?templateMotifSequenceMatchBeginPositionQ979C240 ;
faldo:reference isoform:Q979C2-1 .
?templateMotifSequenceProfileAlignmentOperationQ979C246 edam:has_input signature:MF_02115 ;
rdf:type edam:operation_0300 .
?targetMotifMatch47 faldo:location ?targetMotifMatchRegionMatch48 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0211550 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ979C2MF_0211541 .
?targetMotifMatchRegionMatch48 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0211549 .
?targetMotifMatchRegionMatchBeginMF_0211549 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0211542 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0211550 edam:has_input signature:MF_02115 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ979C2MF_0211539, 1, (STRLEN(?templateMotifCigarQ979C2MF_0211539) - STRLEN(REPLACE(?templateMotifCigarQ979C2MF_0211539, CONCAT('^(?:-*[^-]){', STR(((9 - ?templateMotifSequenceMatchBeginPositionQ979C240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211541, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211541) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211541, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211541, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211541) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211541, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0211542) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ979C2MF_0211539, 1, (STRLEN(?templateMotifCigarQ979C2MF_0211539) - STRLEN(REPLACE(?templateMotifCigarQ979C2MF_0211539, CONCAT('^(?:-*[^-]){', STR(((10 - ?templateMotifSequenceMatchBeginPositionQ979C240) + 1)), '}'), '')))), '[a-z]', '')) AS ?step153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211541, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211541) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211541, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211541, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211541) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211541, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step153), '}'), '')))), '[^-]', ''))) AS ?step254) .
BIND(((?step254 + ?targetMotifMatchRegionMatchBeginPositionMF_0211542) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER (REGEX('[VTA]F', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02115a12')) AS ?annotation12) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch60 faldo:location ?templateMotifSequenceMatchRegionQ979C261 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ979C263 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ979C2MF_0211556 .
?templateMotifSequenceMatchRegionQ979C261 faldo:begin ?templateMotifSequenceMatchBeginQ979C262 .
?templateMotifSequenceMatchBeginQ979C262 faldo:position ?templateMotifSequenceMatchBeginPositionQ979C257 ;
faldo:reference isoform:Q979C2-1 .
?templateMotifSequenceProfileAlignmentOperationQ979C263 edam:has_input signature:MF_02115 ;
rdf:type edam:operation_0300 .
?targetMotifMatch64 faldo:location ?targetMotifMatchRegionMatch65 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0211567 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ979C2MF_0211558 .
?targetMotifMatchRegionMatch65 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0211566 .
?targetMotifMatchRegionMatchBeginMF_0211566 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0211559 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0211567 edam:has_input signature:MF_02115 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ979C2MF_0211556, 1, (STRLEN(?templateMotifCigarQ979C2MF_0211556) - STRLEN(REPLACE(?templateMotifCigarQ979C2MF_0211556, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionQ979C257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211558, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211558) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211558, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211558, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211558) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211558, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0211559) - 1) AS ?thisPositionOn23) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ979C2MF_0211556, 1, (STRLEN(?templateMotifCigarQ979C2MF_0211556) - STRLEN(REPLACE(?templateMotifCigarQ979C2MF_0211556, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionQ979C257) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211558, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211558) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211558, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211558, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211558) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211558, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0211559) - 1) AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER (REGEX('H[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]H', SUBSTR(?thisSequenceValue, ?thisPositionOn23, (?thisPositionOn24 - ?thisPositionOn23)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02115a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionQ979C278 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ979C280 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ979C2MF_0211573 .
?templateMotifSequenceMatchRegionQ979C278 faldo:begin ?templateMotifSequenceMatchBeginQ979C279 .
?templateMotifSequenceMatchBeginQ979C279 faldo:position ?templateMotifSequenceMatchBeginPositionQ979C274 ;
faldo:reference isoform:Q979C2-1 .
?templateMotifSequenceProfileAlignmentOperationQ979C280 edam:has_input signature:MF_02115 ;
rdf:type edam:operation_0300 .
?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0211584 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ979C2MF_0211575 .
?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0211583 .
?targetMotifMatchRegionMatchBeginMF_0211583 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0211576 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0211584 edam:has_input signature:MF_02115 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ979C2MF_0211573, 1, (STRLEN(?templateMotifCigarQ979C2MF_0211573) - STRLEN(REPLACE(?templateMotifCigarQ979C2MF_0211573, CONCAT('^(?:-*[^-]){', STR(((93 - ?templateMotifSequenceMatchBeginPositionQ979C274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211575, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211575) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211575, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211575, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211575) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211575, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0211576) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02115a26')) AS ?annotation26) .
BIND(?this AS ?pfs25) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionQ979C293 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ979C295 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ979C2MF_0211588 .
?templateMotifSequenceMatchRegionQ979C293 faldo:begin ?templateMotifSequenceMatchBeginQ979C294 .
?templateMotifSequenceMatchBeginQ979C294 faldo:position ?templateMotifSequenceMatchBeginPositionQ979C289 ;
faldo:reference isoform:Q979C2-1 .
?templateMotifSequenceProfileAlignmentOperationQ979C295 edam:has_input signature:MF_02115 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0211599 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ979C2MF_0211590 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0211598 .
?targetMotifMatchRegionMatchBeginMF_0211598 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0211591 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0211599 edam:has_input signature:MF_02115 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ979C2MF_0211588, 1, (STRLEN(?templateMotifCigarQ979C2MF_0211588) - STRLEN(REPLACE(?templateMotifCigarQ979C2MF_0211588, CONCAT('^(?:-*[^-]){', STR(((120 - ?templateMotifSequenceMatchBeginPositionQ979C289) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211590, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211590) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211590, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ979C2MF_0211590, 1, (STRLEN(?targetMotifMatchCigarQ979C2MF_0211590) - STRLEN(REPLACE(?targetMotifMatchCigarQ979C2MF_0211590, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0211591) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER (REGEX('[YHF]', SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02115a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
}
"xsd:string |
