| http://purl.uniprot.org/unirules/MF_02126#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:755350 up:source unirule:MF_02126 .
_:755351 up:source unirule:MF_02126 .
_:755352 up:source unirule:MF_02126 .
_:755353 up:source unirule:MF_02126 .
_:755354 up:source unirule:MF_02126 .
_:755355 up:source unirule:MF_02126 .
_:755356 up:source unirule:MF_02126 .
_:755357 up:source unirule:MF_02126 .
_:755358 up:source unirule:MF_02126 .
_:755359 up:source unirule:MF_02126 .
_:755360 up:source unirule:MF_02126 .
_:755361 up:source unirule:MF_02126 .
_:755362 up:source unirule:MF_02126 .
_:755363 up:source unirule:MF_02126 .
_:755364 up:source unirule:MF_02126 .
_:755365 up:source unirule:MF_02126 .
_:755366 up:source unirule:MF_02126 .
_:755367 up:source unirule:MF_02126 .
?this up:alternativeName ?name1 ,
?name2 ,
?name3 ;
up:annotation ?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0018364 ,
GO:0036009 ,
keyword:489 ,
keyword:808 ,
keyword:949 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.297' ;
up:fullName 'Release factor glutamine methyltransferase' ;
up:shortName 'RF MTase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'N5-glutamine methyltransferase PrmC' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Protein-(glutamine-N5) MTase PrmC' ;
rdf:type up:Structured_Name .
?name3 up:fullName 'Protein-glutamine N-methyltransferase PrmC' ;
rdf:type up:Structured_Name .
?gene4 skos:prefLabel 'prmC' .
?annotation5 a up:Function_Annotation ;
rdfs:comment 'Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif.' .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:59789 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf ?molecule21 .
?molecule21 rdfs:label 'substrate' .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:59789 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:59789 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:59789 .
_:755368 a rdf:Statement ;
up:attribution _:755350 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:755369 a rdf:Statement ;
up:attribution _:755351 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:755370 a rdf:Statement ;
up:attribution _:755352 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:755371 a rdf:Statement ;
up:attribution _:755353 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:755372 a rdf:Statement ;
up:attribution _:755354 ;
rdf:subject ?gene4 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene4 .
_:755373 a rdf:Statement ;
up:attribution _:755355 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:755374 a rdf:Statement ;
up:attribution _:755356 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:755375 a rdf:Statement ;
up:attribution _:755357 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:755376 a rdf:Statement ;
up:attribution _:755358 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:755377 a rdf:Statement ;
up:attribution _:755359 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:755378 a rdf:Statement ;
up:attribution _:755360 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:755379 a rdf:Statement ;
up:attribution _:755361 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0036009 .
_:755380 a rdf:Statement ;
up:attribution _:755362 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0018364 .
_:755381 a rdf:Statement ;
up:source unirule:MF_02126 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:755382 a rdf:Statement ;
up:attribution _:755363 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:755383 a rdf:Statement ;
up:source unirule:MF_02126 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:755384 a rdf:Statement ;
up:attribution _:755364 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:755385 a rdf:Statement ;
up:source unirule:MF_02126 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:755386 a rdf:Statement ;
up:attribution _:755365 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:755387 a rdf:Statement ;
up:source unirule:MF_02126 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:755388 a rdf:Statement ;
up:attribution _:755366 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:755389 a rdf:Statement ;
up:source unirule:MF_02126 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:755390 a rdf:Statement ;
up:attribution _:755367 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02126
#Rule MF_02126 Created by:? on:2011-10-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02126 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_02126a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02126a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02126a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_02126a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_02126a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02126a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02126a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch49 faldo:location ?templateMotifSequenceMatchRegionP0ACC150 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC152 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC1MF_0212645 .
?templateMotifSequenceMatchRegionP0ACC150 faldo:begin ?templateMotifSequenceMatchBeginP0ACC151 .
?templateMotifSequenceMatchBeginP0ACC151 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC146 ;
faldo:reference isoform:P0ACC1-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC152 edam:has_input signature:MF_02126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch53 faldo:location ?targetMotifMatchRegionMatch54 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0212656 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC1MF_0212647 .
?targetMotifMatchRegionMatch54 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0212655 .
?targetMotifMatchRegionMatchBeginMF_0212655 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0212648 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0212656 edam:has_input signature:MF_02126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC1MF_0212645, 1, (STRLEN(?templateMotifCigarP0ACC1MF_0212645) - STRLEN(REPLACE(?templateMotifCigarP0ACC1MF_0212645, CONCAT('^(?:-*[^-]){', STR(((117 - ?templateMotifSequenceMatchBeginPositionP0ACC146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC1MF_0212647, 1, (STRLEN(?targetMotifMatchCigarP0ACC1MF_0212647) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC1MF_0212647, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC1MF_0212647, 1, (STRLEN(?targetMotifMatchCigarP0ACC1MF_0212647) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC1MF_0212647, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0212648) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC1MF_0212645, 1, (STRLEN(?templateMotifCigarP0ACC1MF_0212645) - STRLEN(REPLACE(?templateMotifCigarP0ACC1MF_0212645, CONCAT('^(?:-*[^-]){', STR(((121 - ?templateMotifSequenceMatchBeginPositionP0ACC146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC1MF_0212647, 1, (STRLEN(?targetMotifMatchCigarP0ACC1MF_0212647) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC1MF_0212647, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC1MF_0212647, 1, (STRLEN(?targetMotifMatchCigarP0ACC1MF_0212647) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC1MF_0212647, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) .
BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0212648) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX]G[ARNDCQEGHILKMFPSTWYVBZJUOX]G', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02126a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionP0ACC167 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC169 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC1MF_0212662 .
?templateMotifSequenceMatchRegionP0ACC167 faldo:begin ?templateMotifSequenceMatchBeginP0ACC168 .
?templateMotifSequenceMatchBeginP0ACC168 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC163 ;
faldo:reference isoform:P0ACC1-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC169 edam:has_input signature:MF_02126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0212673 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC1MF_0212664 .
?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0212672 .
?targetMotifMatchRegionMatchBeginMF_0212672 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0212665 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0212673 edam:has_input signature:MF_02126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC1MF_0212662, 1, (STRLEN(?templateMotifCigarP0ACC1MF_0212662) - STRLEN(REPLACE(?templateMotifCigarP0ACC1MF_0212662, CONCAT('^(?:-*[^-]){', STR(((183 - ?templateMotifSequenceMatchBeginPositionP0ACC163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC1MF_0212664, 1, (STRLEN(?targetMotifMatchCigarP0ACC1MF_0212664) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC1MF_0212664, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC1MF_0212664, 1, (STRLEN(?targetMotifMatchCigarP0ACC1MF_0212664) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC1MF_0212664, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0212665) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC1MF_0212662, 1, (STRLEN(?templateMotifCigarP0ACC1MF_0212662) - STRLEN(REPLACE(?templateMotifCigarP0ACC1MF_0212662, CONCAT('^(?:-*[^-]){', STR(((186 - ?templateMotifSequenceMatchBeginPositionP0ACC163) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC1MF_0212664, 1, (STRLEN(?targetMotifMatchCigarP0ACC1MF_0212664) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC1MF_0212664, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC1MF_0212664, 1, (STRLEN(?targetMotifMatchCigarP0ACC1MF_0212664) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC1MF_0212664, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0212665) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)) = 'NPPY')) .
BIND(URI(CONCAT(STR(?this), '#MF_02126a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionP0ACC184 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC186 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC1MF_0212679 .
?templateMotifSequenceMatchRegionP0ACC184 faldo:begin ?templateMotifSequenceMatchBeginP0ACC185 .
?templateMotifSequenceMatchBeginP0ACC185 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC180 ;
faldo:reference isoform:P0ACC1-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC186 edam:has_input signature:MF_02126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0212690 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC1MF_0212681 .
?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0212689 .
?targetMotifMatchRegionMatchBeginMF_0212689 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0212682 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0212690 edam:has_input signature:MF_02126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC1MF_0212679, 1, (STRLEN(?templateMotifCigarP0ACC1MF_0212679) - STRLEN(REPLACE(?templateMotifCigarP0ACC1MF_0212679, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP0ACC180) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC1MF_0212681, 1, (STRLEN(?targetMotifMatchCigarP0ACC1MF_0212681) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC1MF_0212681, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC1MF_0212681, 1, (STRLEN(?targetMotifMatchCigarP0ACC1MF_0212681) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC1MF_0212681, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0212682) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02126a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP0ACC199 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC1101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC1MF_0212694 .
?templateMotifSequenceMatchRegionP0ACC199 faldo:begin ?templateMotifSequenceMatchBeginP0ACC1100 .
?templateMotifSequenceMatchBeginP0ACC1100 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC195 ;
faldo:reference isoform:P0ACC1-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC1101 edam:has_input signature:MF_02126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02126105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC1MF_0212696 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02126104 .
?targetMotifMatchRegionMatchBeginMF_02126104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0212697 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02126105 edam:has_input signature:MF_02126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC1MF_0212694, 1, (STRLEN(?templateMotifCigarP0ACC1MF_0212694) - STRLEN(REPLACE(?templateMotifCigarP0ACC1MF_0212694, CONCAT('^(?:-*[^-]){', STR(((168 - ?templateMotifSequenceMatchBeginPositionP0ACC195) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC1MF_0212696, 1, (STRLEN(?targetMotifMatchCigarP0ACC1MF_0212696) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC1MF_0212696, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC1MF_0212696, 1, (STRLEN(?targetMotifMatchCigarP0ACC1MF_0212696) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC1MF_0212696, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0212697) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER (REGEX('[WF]', SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_02126a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP0ACC1114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0ACC1116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0ACC1MF_02126109 .
?templateMotifSequenceMatchRegionP0ACC1114 faldo:begin ?templateMotifSequenceMatchBeginP0ACC1115 .
?templateMotifSequenceMatchBeginP0ACC1115 faldo:position ?templateMotifSequenceMatchBeginPositionP0ACC1110 ;
faldo:reference isoform:P0ACC1-1 .
?templateMotifSequenceProfileAlignmentOperationP0ACC1116 edam:has_input signature:MF_02126 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02126120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0ACC1MF_02126111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02126119 .
?targetMotifMatchRegionMatchBeginMF_02126119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02126112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02126120 edam:has_input signature:MF_02126 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0ACC1MF_02126109, 1, (STRLEN(?templateMotifCigarP0ACC1MF_02126109) - STRLEN(REPLACE(?templateMotifCigarP0ACC1MF_02126109, CONCAT('^(?:-*[^-]){', STR(((183 - ?templateMotifSequenceMatchBeginPositionP0ACC1110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0ACC1MF_02126111, 1, (STRLEN(?targetMotifMatchCigarP0ACC1MF_02126111) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC1MF_02126111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0ACC1MF_02126111, 1, (STRLEN(?targetMotifMatchCigarP0ACC1MF_02126111) - STRLEN(REPLACE(?targetMotifMatchCigarP0ACC1MF_02126111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_02126112) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_02126a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
}
"xsd:string |
