| http://purl.uniprot.org/unirules/MF_02132#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:758355 up:source unirule:MF_02132 .
_:758356 up:source unirule:MF_02132 .
_:758357 up:source unirule:MF_02132 .
_:758358 up:source unirule:MF_02132 .
_:758359 up:source unirule:MF_02132 .
_:758360 up:source unirule:MF_02132 .
_:758361 up:source unirule:MF_02132 .
_:758362 up:source unirule:MF_02132 .
_:758363 up:source unirule:MF_02132 .
_:758364 up:source unirule:MF_02132 .
_:758365 up:source unirule:MF_02132 .
_:758366 up:source unirule:MF_02132 .
_:758367 up:source unirule:MF_02132 .
_:758368 up:source unirule:MF_02132 .
_:758369 up:source unirule:MF_02132 .
_:758370 up:source unirule:MF_02132 .
_:758371 up:source unirule:MF_02132 .
_:758372 up:source unirule:MF_02132 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0006196 ,
GO:0016208 ,
GO:0016763 ,
keyword:328 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.4.2.57' ;
up:fullName 'AMP phosphorylase' ;
up:shortName 'AMPpase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Nucleoside monophosphate phosphorylase' ;
up:shortName 'NMP phosphorylase' ;
rdf:type up:Structured_Name .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the conversion of AMP and phosphate to adenine and ribose 1,5-bisphosphate (R15P). Exhibits phosphorylase activity toward CMP and UMP in addition to AMP. Functions in an archaeal AMP degradation pathway, together with R15P isomerase and RubisCO.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity ;
up:enzymeClass .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:456215 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:456215 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:456215 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:456215 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:456215 .
_:758373 a rdf:Statement ;
up:attribution _:758355 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:758374 a rdf:Statement ;
up:attribution _:758356 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:758375 a rdf:Statement ;
up:attribution _:758357 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:758376 a rdf:Statement ;
up:attribution _:758358 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:758377 a rdf:Statement ;
up:attribution _:758359 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:758378 a rdf:Statement ;
up:attribution _:758360 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:758379 a rdf:Statement ;
up:attribution _:758361 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:758380 a rdf:Statement ;
up:attribution _:758362 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:328 .
_:758381 a rdf:Statement ;
up:attribution _:758363 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:758382 a rdf:Statement ;
up:attribution _:758364 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016208 .
_:758383 a rdf:Statement ;
up:attribution _:758365 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016763 .
_:758384 a rdf:Statement ;
up:attribution _:758366 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006196 .
_:758385 a rdf:Statement ;
up:source unirule:MF_02132 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:758386 a rdf:Statement ;
up:attribution _:758367 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:758387 a rdf:Statement ;
up:source unirule:MF_02132 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:758388 a rdf:Statement ;
up:attribution _:758368 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:758389 a rdf:Statement ;
up:source unirule:MF_02132 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:758390 a rdf:Statement ;
up:attribution _:758369 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:758391 a rdf:Statement ;
up:source unirule:MF_02132 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:758392 a rdf:Statement ;
up:attribution _:758370 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:758393 a rdf:Statement ;
up:source unirule:MF_02132 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:758394 a rdf:Statement ;
up:attribution _:758371 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:758395 a rdf:Statement ;
up:source unirule:MF_02132 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:758396 a rdf:Statement ;
up:attribution _:758372 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02132
#Rule MF_02132 Created by:? on:2013-05-16 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02132 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_02132a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02132a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02132a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02132a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02132a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02132a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02132a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch55 faldo:location ?templateMotifSequenceMatchRegionQ5JCX356 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5JCX358 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5JCX3MF_0213251 .
?templateMotifSequenceMatchRegionQ5JCX356 faldo:begin ?templateMotifSequenceMatchBeginQ5JCX357 .
?templateMotifSequenceMatchBeginQ5JCX357 faldo:position ?templateMotifSequenceMatchBeginPositionQ5JCX352 ;
faldo:reference isoform:Q5JCX3-1 .
?templateMotifSequenceProfileAlignmentOperationQ5JCX358 edam:has_input signature:MF_02132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch59 faldo:location ?targetMotifMatchRegionMatch60 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0213262 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5JCX3MF_0213253 .
?targetMotifMatchRegionMatch60 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0213261 .
?targetMotifMatchRegionMatchBeginMF_0213261 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0213254 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0213262 edam:has_input signature:MF_02132 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5JCX3MF_0213251, 1, (STRLEN(?templateMotifCigarQ5JCX3MF_0213251) - STRLEN(REPLACE(?templateMotifCigarQ5JCX3MF_0213251, CONCAT('^(?:-*[^-]){', STR(((194 - ?templateMotifSequenceMatchBeginPositionQ5JCX352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5JCX3MF_0213253, 1, (STRLEN(?targetMotifMatchCigarQ5JCX3MF_0213253) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JCX3MF_0213253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5JCX3MF_0213253, 1, (STRLEN(?targetMotifMatchCigarQ5JCX3MF_0213253) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JCX3MF_0213253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0213254) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5JCX3MF_0213251, 1, (STRLEN(?templateMotifCigarQ5JCX3MF_0213251) - STRLEN(REPLACE(?templateMotifCigarQ5JCX3MF_0213251, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionQ5JCX352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5JCX3MF_0213253, 1, (STRLEN(?targetMotifMatchCigarQ5JCX3MF_0213253) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JCX3MF_0213253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5JCX3MF_0213253, 1, (STRLEN(?targetMotifMatchCigarQ5JCX3MF_0213253) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JCX3MF_0213253, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0213254) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER (REGEX('S[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][IV]T[SG]', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02132a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionQ5JCX373 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5JCX375 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5JCX3MF_0213268 .
?templateMotifSequenceMatchRegionQ5JCX373 faldo:begin ?templateMotifSequenceMatchBeginQ5JCX374 .
?templateMotifSequenceMatchBeginQ5JCX374 faldo:position ?templateMotifSequenceMatchBeginPositionQ5JCX369 ;
faldo:reference isoform:Q5JCX3-1 .
?templateMotifSequenceProfileAlignmentOperationQ5JCX375 edam:has_input signature:MF_02132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0213279 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5JCX3MF_0213270 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0213278 .
?targetMotifMatchRegionMatchBeginMF_0213278 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0213271 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0213279 edam:has_input signature:MF_02132 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5JCX3MF_0213268, 1, (STRLEN(?templateMotifCigarQ5JCX3MF_0213268) - STRLEN(REPLACE(?templateMotifCigarQ5JCX3MF_0213268, CONCAT('^(?:-*[^-]){', STR(((256 - ?templateMotifSequenceMatchBeginPositionQ5JCX369) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5JCX3MF_0213270, 1, (STRLEN(?targetMotifMatchCigarQ5JCX3MF_0213270) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JCX3MF_0213270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5JCX3MF_0213270, 1, (STRLEN(?targetMotifMatchCigarQ5JCX3MF_0213270) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JCX3MF_0213270, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0213271) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02132a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionQ5JCX388 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5JCX390 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5JCX3MF_0213283 .
?templateMotifSequenceMatchRegionQ5JCX388 faldo:begin ?templateMotifSequenceMatchBeginQ5JCX389 .
?templateMotifSequenceMatchBeginQ5JCX389 faldo:position ?templateMotifSequenceMatchBeginPositionQ5JCX384 ;
faldo:reference isoform:Q5JCX3-1 .
?templateMotifSequenceProfileAlignmentOperationQ5JCX390 edam:has_input signature:MF_02132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0213294 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5JCX3MF_0213285 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0213293 .
?targetMotifMatchRegionMatchBeginMF_0213293 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0213286 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0213294 edam:has_input signature:MF_02132 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5JCX3MF_0213283, 1, (STRLEN(?templateMotifCigarQ5JCX3MF_0213283) - STRLEN(REPLACE(?templateMotifCigarQ5JCX3MF_0213283, CONCAT('^(?:-*[^-]){', STR(((168 - ?templateMotifSequenceMatchBeginPositionQ5JCX384) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5JCX3MF_0213285, 1, (STRLEN(?targetMotifMatchCigarQ5JCX3MF_0213285) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JCX3MF_0213285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5JCX3MF_0213285, 1, (STRLEN(?targetMotifMatchCigarQ5JCX3MF_0213285) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JCX3MF_0213285, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0213286) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_02132a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionQ5JCX3103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5JCX3105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5JCX3MF_0213298 .
?templateMotifSequenceMatchRegionQ5JCX3103 faldo:begin ?templateMotifSequenceMatchBeginQ5JCX3104 .
?templateMotifSequenceMatchBeginQ5JCX3104 faldo:position ?templateMotifSequenceMatchBeginPositionQ5JCX399 ;
faldo:reference isoform:Q5JCX3-1 .
?templateMotifSequenceProfileAlignmentOperationQ5JCX3105 edam:has_input signature:MF_02132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02132109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5JCX3MF_02132100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02132108 .
?targetMotifMatchRegionMatchBeginMF_02132108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02132101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02132109 edam:has_input signature:MF_02132 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5JCX3MF_0213298, 1, (STRLEN(?templateMotifCigarQ5JCX3MF_0213298) - STRLEN(REPLACE(?templateMotifCigarQ5JCX3MF_0213298, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionQ5JCX399) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5JCX3MF_02132100, 1, (STRLEN(?targetMotifMatchCigarQ5JCX3MF_02132100) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JCX3MF_02132100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5JCX3MF_02132100, 1, (STRLEN(?targetMotifMatchCigarQ5JCX3MF_02132100) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JCX3MF_02132100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_02132101) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_02132a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionQ5JCX3118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5JCX3120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5JCX3MF_02132113 .
?templateMotifSequenceMatchRegionQ5JCX3118 faldo:begin ?templateMotifSequenceMatchBeginQ5JCX3119 .
?templateMotifSequenceMatchBeginQ5JCX3119 faldo:position ?templateMotifSequenceMatchBeginPositionQ5JCX3114 ;
faldo:reference isoform:Q5JCX3-1 .
?templateMotifSequenceProfileAlignmentOperationQ5JCX3120 edam:has_input signature:MF_02132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02132124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5JCX3MF_02132115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02132123 .
?targetMotifMatchRegionMatchBeginMF_02132123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02132116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02132124 edam:has_input signature:MF_02132 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5JCX3MF_02132113, 1, (STRLEN(?templateMotifCigarQ5JCX3MF_02132113) - STRLEN(REPLACE(?templateMotifCigarQ5JCX3MF_02132113, CONCAT('^(?:-*[^-]){', STR(((264 - ?templateMotifSequenceMatchBeginPositionQ5JCX3114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5JCX3MF_02132115, 1, (STRLEN(?targetMotifMatchCigarQ5JCX3MF_02132115) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JCX3MF_02132115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5JCX3MF_02132115, 1, (STRLEN(?targetMotifMatchCigarQ5JCX3MF_02132115) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JCX3MF_02132115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_02132116) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_02132a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionQ5JCX3133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5JCX3135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5JCX3MF_02132128 .
?templateMotifSequenceMatchRegionQ5JCX3133 faldo:begin ?templateMotifSequenceMatchBeginQ5JCX3134 .
?templateMotifSequenceMatchBeginQ5JCX3134 faldo:position ?templateMotifSequenceMatchBeginPositionQ5JCX3129 ;
faldo:reference isoform:Q5JCX3-1 .
?templateMotifSequenceProfileAlignmentOperationQ5JCX3135 edam:has_input signature:MF_02132 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02132139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5JCX3MF_02132130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02132138 .
?targetMotifMatchRegionMatchBeginMF_02132138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02132131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02132139 edam:has_input signature:MF_02132 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5JCX3MF_02132128, 1, (STRLEN(?templateMotifCigarQ5JCX3MF_02132128) - STRLEN(REPLACE(?templateMotifCigarQ5JCX3MF_02132128, CONCAT('^(?:-*[^-]){', STR(((288 - ?templateMotifSequenceMatchBeginPositionQ5JCX3129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5JCX3MF_02132130, 1, (STRLEN(?targetMotifMatchCigarQ5JCX3MF_02132130) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JCX3MF_02132130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5JCX3MF_02132130, 1, (STRLEN(?targetMotifMatchCigarQ5JCX3MF_02132130) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JCX3MF_02132130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_02132131) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_02132a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
}
"xsd:string |
