| http://purl.uniprot.org/unirules/MF_02211#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:762837 up:source unirule:MF_02211 .
_:762838 up:source unirule:MF_02211 .
_:762839 up:source unirule:MF_02211 .
_:762840 up:source unirule:MF_02211 .
_:762841 up:source unirule:MF_02211 .
_:762842 up:source unirule:MF_02211 .
_:762843 up:source unirule:MF_02211 .
_:762844 up:source unirule:MF_02211 .
_:762845 up:source unirule:MF_02211 .
_:762846 up:source unirule:MF_02211 .
_:762847 up:source unirule:MF_02211 .
_:762848 up:source unirule:MF_02211 .
_:762849 up:source unirule:MF_02211 .
_:762850 up:source unirule:MF_02211 .
_:762851 up:source unirule:MF_02211 .
_:762852 up:source unirule:MF_02211 .
_:762853 up:source unirule:MF_02211 .
_:762854 up:source unirule:MF_02211 .
_:762855 up:source unirule:MF_02211 .
_:762856 up:source unirule:MF_02211 .
_:762857 up:source unirule:MF_02211 .
_:762858 up:source unirule:MF_02211 .
_:762859 up:source unirule:MF_02211 .
_:762860 up:source unirule:MF_02211 .
_:762861 up:source unirule:MF_02211 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation4 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation11 ;
up:classifiedWith GO:0005737 ,
GO:0009253 ,
GO:0061473 ,
keyword:121 ,
keyword:378 ,
keyword:482 ,
keyword:645 ,
keyword:961 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.4.17.-' ;
up:fullName 'Murein peptide amidase A' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Gamma-D-Glu-Dap amidase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Zinc metallocarboxypeptidase MpaA' ;
rdf:type up:Structured_Name .
?gene3 skos:prefLabel 'mpaA' .
?annotation4 a up:Function_Annotation ;
rdfs:comment 'Involved in muropeptide degradation. Catalyzes the hydrolysis of the gamma-D-glutamyl-diaminopimelic acid (gamma-D-Glu-Dap) amide bond in the murein tripeptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelic acid, leading to the formation of L-Ala-gamma-D-Glu and Dap.' .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Cell wall degradation; peptidoglycan degradation.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation9 a up:Subcellular_Location_Annotation .
?annotation9li10 up:cellularComponent .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peptidase M14 family.' .
?case12 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs13 up:annotation ?annotation14 ,
?annotation20 ,
?annotation26 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:29105 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:29105 .
?annotation26 faldo:begin ?pfsb27 ;
faldo:end ?pfse28 ;
up:ligand ?ligand29 ;
rdf:type up:Binding_Site_Annotation .
?pfsb27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?ligand29 rdfs:subClassOf chebi:29105 .
_:762862 a rdf:Statement ;
up:attribution _:762837 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:762863 a rdf:Statement ;
up:attribution _:762838 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:762864 a rdf:Statement ;
up:attribution _:762839 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:762865 a rdf:Statement ;
up:attribution _:762840 ;
rdf:subject ?gene3 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene3 .
_:762866 a rdf:Statement ;
up:attribution _:762841 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:762867 a rdf:Statement ;
up:attribution _:762842 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:762868 a rdf:Statement ;
up:attribution _:762843 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:762869 a rdf:Statement ;
up:attribution _:762844 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:762870 a rdf:Statement ;
up:attribution _:762845 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:762871 a rdf:Statement ;
up:attribution _:762846 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:762872 a rdf:Statement ;
up:attribution _:762847 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:121 .
_:762873 a rdf:Statement ;
up:attribution _:762848 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:961 .
_:762874 a rdf:Statement ;
up:attribution _:762849 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:762875 a rdf:Statement ;
up:attribution _:762850 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:762876 a rdf:Statement ;
up:attribution _:762851 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:482 .
_:762877 a rdf:Statement ;
up:attribution _:762852 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:645 .
_:762878 a rdf:Statement ;
up:attribution _:762853 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0061473 .
_:762879 a rdf:Statement ;
up:attribution _:762854 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009253 .
_:762880 a rdf:Statement ;
up:attribution _:762855 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:762881 a rdf:Statement ;
up:attribution _:762856 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:762882 a rdf:Statement ;
up:attribution _:762857 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:762883 a rdf:Statement ;
up:attribution _:762858 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:762884 a rdf:Statement ;
up:source unirule:MF_02211 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:762885 a rdf:Statement ;
up:attribution _:762859 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:762886 a rdf:Statement ;
up:source unirule:MF_02211 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:762887 a rdf:Statement ;
up:attribution _:762860 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:762888 a rdf:Statement ;
up:source unirule:MF_02211 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
_:762889 a rdf:Statement ;
up:attribution _:762861 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation26 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02211
#Rule MF_02211 Created by:? on:2019-02-19 Modified by:Elisabeth Coudert on:2025-01-09
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02211 .
?thisOrganism rdfs:subClassOf+ taxon:1236 .
BIND(URI(CONCAT(STR(?this), '#MF_02211a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02211a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02211a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_02211a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02211a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02211a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_02211a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_02211a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_02211a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch36 faldo:location ?templateMotifSequenceMatchRegionA7N80537 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA7N80539 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA7N805MF_0221132 .
?templateMotifSequenceMatchRegionA7N80537 faldo:begin ?templateMotifSequenceMatchBeginA7N80538 .
?templateMotifSequenceMatchBeginA7N80538 faldo:position ?templateMotifSequenceMatchBeginPositionA7N80533 ;
faldo:reference isoform:A7N805-1 .
?templateMotifSequenceProfileAlignmentOperationA7N80539 edam:has_input signature:MF_02211 ;
rdf:type edam:operation_0300 .
?targetMotifMatch40 faldo:location ?targetMotifMatchRegionMatch41 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0221143 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA7N805MF_0221134 .
?targetMotifMatchRegionMatch41 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0221142 .
?targetMotifMatchRegionMatchBeginMF_0221142 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0221135 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0221143 edam:has_input signature:MF_02211 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA7N805MF_0221132, 1, (STRLEN(?templateMotifCigarA7N805MF_0221132) - STRLEN(REPLACE(?templateMotifCigarA7N805MF_0221132, CONCAT('^(?:-*[^-]){', STR(((60 - ?templateMotifSequenceMatchBeginPositionA7N80533) + 1)), '}'), '')))), '[a-z]', '')) AS ?step144) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA7N805MF_0221134, 1, (STRLEN(?targetMotifMatchCigarA7N805MF_0221134) - STRLEN(REPLACE(?targetMotifMatchCigarA7N805MF_0221134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA7N805MF_0221134, 1, (STRLEN(?targetMotifMatchCigarA7N805MF_0221134) - STRLEN(REPLACE(?targetMotifMatchCigarA7N805MF_0221134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step144), '}'), '')))), '[^-]', ''))) AS ?step245) .
BIND(((?step245 + ?targetMotifMatchRegionMatchBeginPositionMF_0221135) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA7N805MF_0221132, 1, (STRLEN(?templateMotifCigarA7N805MF_0221132) - STRLEN(REPLACE(?templateMotifCigarA7N805MF_0221132, CONCAT('^(?:-*[^-]){', STR(((63 - ?templateMotifSequenceMatchBeginPositionA7N80533) + 1)), '}'), '')))), '[a-z]', '')) AS ?step147) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA7N805MF_0221134, 1, (STRLEN(?targetMotifMatchCigarA7N805MF_0221134) - STRLEN(REPLACE(?targetMotifMatchCigarA7N805MF_0221134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA7N805MF_0221134, 1, (STRLEN(?targetMotifMatchCigarA7N805MF_0221134) - STRLEN(REPLACE(?targetMotifMatchCigarA7N805MF_0221134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step147), '}'), '')))), '[^-]', ''))) AS ?step248) .
BIND(((?step248 + ?targetMotifMatchRegionMatchBeginPositionMF_0221135) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'E')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA7N805MF_0221132, 1, (STRLEN(?templateMotifCigarA7N805MF_0221132) - STRLEN(REPLACE(?templateMotifCigarA7N805MF_0221132, CONCAT('^(?:-*[^-]){', STR(((168 - ?templateMotifSequenceMatchBeginPositionA7N80533) + 1)), '}'), '')))), '[a-z]', '')) AS ?step150) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA7N805MF_0221134, 1, (STRLEN(?targetMotifMatchCigarA7N805MF_0221134) - STRLEN(REPLACE(?targetMotifMatchCigarA7N805MF_0221134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA7N805MF_0221134, 1, (STRLEN(?targetMotifMatchCigarA7N805MF_0221134) - STRLEN(REPLACE(?targetMotifMatchCigarA7N805MF_0221134, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step150), '}'), '')))), '[^-]', ''))) AS ?step251) .
BIND(((?step251 + ?targetMotifMatchRegionMatchBeginPositionMF_0221135) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb27) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse28) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'H')) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag53) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag53, ?UNBOUND_VARIABLE) AS ?case12) .
}
"xsd:string |
