| http://purl.uniprot.org/unirules/MF_02224#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:767688 up:source unirule:MF_02224 .
_:767689 up:source unirule:MF_02224 .
_:767690 up:source unirule:MF_02224 .
_:767691 up:source unirule:MF_02224 .
_:767692 up:source unirule:MF_02224 .
_:767693 up:source unirule:MF_02224 .
_:767694 up:source unirule:MF_02224 .
_:767695 up:source unirule:MF_02224 .
_:767696 up:source unirule:MF_02224 .
_:767697 up:source unirule:MF_02224 .
_:767698 up:source unirule:MF_02224 .
_:767699 up:source unirule:MF_02224 .
_:767700 up:source unirule:MF_02224 .
_:767701 up:source unirule:MF_02224 .
_:767702 up:source unirule:MF_02224 .
_:767703 up:source unirule:MF_02224 .
_:767704 up:source unirule:MF_02224 .
_:767705 up:source unirule:MF_02224 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0015937 ,
GO:0016881 ,
keyword:173 ,
keyword:436 ,
keyword:547 ,
keyword:67 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.3.2.36' ;
up:fullName '4-phosphopantoate--beta-alanine ligase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Phosphopantothenate synthetase' ;
up:shortName 'PPS' ;
rdf:type up:Structured_Name .
?annotation2 a up:Function_Annotation ;
rdfs:comment "Catalyzes the condensation of (R)-4-phosphopantoate and beta-alanine to 4'-phosphopantothenate in the CoA biosynthesis pathway." .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; coenzyme A biosynthesis.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the archaeal phosphopantothenate synthetase family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:30616 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:30616 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:30616 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:30616 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:30616 .
_:767706 a rdf:Statement ;
up:attribution _:767688 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:767707 a rdf:Statement ;
up:attribution _:767689 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:767708 a rdf:Statement ;
up:attribution _:767690 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:767709 a rdf:Statement ;
up:attribution _:767691 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:767710 a rdf:Statement ;
up:attribution _:767692 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:767711 a rdf:Statement ;
up:attribution _:767693 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:767712 a rdf:Statement ;
up:attribution _:767694 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:767713 a rdf:Statement ;
up:attribution _:767695 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:767714 a rdf:Statement ;
up:attribution _:767696 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:173 .
_:767715 a rdf:Statement ;
up:attribution _:767697 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:767716 a rdf:Statement ;
up:attribution _:767698 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:767717 a rdf:Statement ;
up:attribution _:767699 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016881 .
_:767718 a rdf:Statement ;
up:attribution _:767700 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015937 .
_:767719 a rdf:Statement ;
up:source unirule:MF_02224 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:767720 a rdf:Statement ;
up:attribution _:767701 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:767721 a rdf:Statement ;
up:source unirule:MF_02224 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:767722 a rdf:Statement ;
up:attribution _:767702 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:767723 a rdf:Statement ;
up:source unirule:MF_02224 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:767724 a rdf:Statement ;
up:attribution _:767703 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:767725 a rdf:Statement ;
up:source unirule:MF_02224 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:767726 a rdf:Statement ;
up:attribution _:767704 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:767727 a rdf:Statement ;
up:source unirule:MF_02224 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:767728 a rdf:Statement ;
up:attribution _:767705 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02224
#Rule MF_02224 Created by:? on:2019-08-20 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02224 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_02224a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02224a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02224a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02224a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02224a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02224a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02224a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch47 faldo:location ?templateMotifSequenceMatchRegionQ5JIZ848 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5JIZ850 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5JIZ8MF_0222443 .
?templateMotifSequenceMatchRegionQ5JIZ848 faldo:begin ?templateMotifSequenceMatchBeginQ5JIZ849 .
?templateMotifSequenceMatchBeginQ5JIZ849 faldo:position ?templateMotifSequenceMatchBeginPositionQ5JIZ844 ;
faldo:reference isoform:Q5JIZ8-1 .
?templateMotifSequenceProfileAlignmentOperationQ5JIZ850 edam:has_input signature:MF_02224 ;
rdf:type edam:operation_0300 .
?targetMotifMatch51 faldo:location ?targetMotifMatchRegionMatch52 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0222454 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5JIZ8MF_0222445 .
?targetMotifMatchRegionMatch52 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0222453 .
?targetMotifMatchRegionMatchBeginMF_0222453 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0222446 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0222454 edam:has_input signature:MF_02224 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5JIZ8MF_0222443, 1, (STRLEN(?templateMotifCigarQ5JIZ8MF_0222443) - STRLEN(REPLACE(?templateMotifCigarQ5JIZ8MF_0222443, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionQ5JIZ844) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5JIZ8MF_0222445, 1, (STRLEN(?targetMotifMatchCigarQ5JIZ8MF_0222445) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JIZ8MF_0222445, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5JIZ8MF_0222445, 1, (STRLEN(?targetMotifMatchCigarQ5JIZ8MF_0222445) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JIZ8MF_0222445, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0222446) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5JIZ8MF_0222443, 1, (STRLEN(?templateMotifCigarQ5JIZ8MF_0222443) - STRLEN(REPLACE(?templateMotifCigarQ5JIZ8MF_0222443, CONCAT('^(?:-*[^-]){', STR(((183 - ?templateMotifSequenceMatchBeginPositionQ5JIZ844) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5JIZ8MF_0222445, 1, (STRLEN(?targetMotifMatchCigarQ5JIZ8MF_0222445) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JIZ8MF_0222445, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5JIZ8MF_0222445, 1, (STRLEN(?targetMotifMatchCigarQ5JIZ8MF_0222445) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JIZ8MF_0222445, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0222446) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER (REGEX('D[LI]N', SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02224a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch64 faldo:location ?templateMotifSequenceMatchRegionQ5JIZ865 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5JIZ867 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5JIZ8MF_0222460 .
?templateMotifSequenceMatchRegionQ5JIZ865 faldo:begin ?templateMotifSequenceMatchBeginQ5JIZ866 .
?templateMotifSequenceMatchBeginQ5JIZ866 faldo:position ?templateMotifSequenceMatchBeginPositionQ5JIZ861 ;
faldo:reference isoform:Q5JIZ8-1 .
?templateMotifSequenceProfileAlignmentOperationQ5JIZ867 edam:has_input signature:MF_02224 ;
rdf:type edam:operation_0300 .
?targetMotifMatch68 faldo:location ?targetMotifMatchRegionMatch69 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0222471 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5JIZ8MF_0222462 .
?targetMotifMatchRegionMatch69 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0222470 .
?targetMotifMatchRegionMatchBeginMF_0222470 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0222463 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0222471 edam:has_input signature:MF_02224 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5JIZ8MF_0222460, 1, (STRLEN(?templateMotifCigarQ5JIZ8MF_0222460) - STRLEN(REPLACE(?templateMotifCigarQ5JIZ8MF_0222460, CONCAT('^(?:-*[^-]){', STR(((187 - ?templateMotifSequenceMatchBeginPositionQ5JIZ861) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5JIZ8MF_0222462, 1, (STRLEN(?targetMotifMatchCigarQ5JIZ8MF_0222462) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JIZ8MF_0222462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5JIZ8MF_0222462, 1, (STRLEN(?targetMotifMatchCigarQ5JIZ8MF_0222462) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JIZ8MF_0222462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0222463) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5JIZ8MF_0222460, 1, (STRLEN(?templateMotifCigarQ5JIZ8MF_0222460) - STRLEN(REPLACE(?templateMotifCigarQ5JIZ8MF_0222460, CONCAT('^(?:-*[^-]){', STR(((188 - ?templateMotifSequenceMatchBeginPositionQ5JIZ861) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5JIZ8MF_0222462, 1, (STRLEN(?targetMotifMatchCigarQ5JIZ8MF_0222462) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JIZ8MF_0222462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5JIZ8MF_0222462, 1, (STRLEN(?targetMotifMatchCigarQ5JIZ8MF_0222462) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JIZ8MF_0222462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0222463) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('R[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02224a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionQ5JIZ882 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5JIZ884 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5JIZ8MF_0222477 .
?templateMotifSequenceMatchRegionQ5JIZ882 faldo:begin ?templateMotifSequenceMatchBeginQ5JIZ883 .
?templateMotifSequenceMatchBeginQ5JIZ883 faldo:position ?templateMotifSequenceMatchBeginPositionQ5JIZ878 ;
faldo:reference isoform:Q5JIZ8-1 .
?templateMotifSequenceProfileAlignmentOperationQ5JIZ884 edam:has_input signature:MF_02224 ;
rdf:type edam:operation_0300 .
?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0222488 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5JIZ8MF_0222479 .
?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0222487 .
?targetMotifMatchRegionMatchBeginMF_0222487 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0222480 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0222488 edam:has_input signature:MF_02224 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5JIZ8MF_0222477, 1, (STRLEN(?templateMotifCigarQ5JIZ8MF_0222477) - STRLEN(REPLACE(?templateMotifCigarQ5JIZ8MF_0222477, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionQ5JIZ878) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5JIZ8MF_0222479, 1, (STRLEN(?targetMotifMatchCigarQ5JIZ8MF_0222479) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JIZ8MF_0222479, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5JIZ8MF_0222479, 1, (STRLEN(?targetMotifMatchCigarQ5JIZ8MF_0222479) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JIZ8MF_0222479, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0222480) - 1) AS ?thisPositionOn27) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5JIZ8MF_0222477, 1, (STRLEN(?templateMotifCigarQ5JIZ8MF_0222477) - STRLEN(REPLACE(?templateMotifCigarQ5JIZ8MF_0222477, CONCAT('^(?:-*[^-]){', STR(((200 - ?templateMotifSequenceMatchBeginPositionQ5JIZ878) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5JIZ8MF_0222479, 1, (STRLEN(?targetMotifMatchCigarQ5JIZ8MF_0222479) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JIZ8MF_0222479, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5JIZ8MF_0222479, 1, (STRLEN(?targetMotifMatchCigarQ5JIZ8MF_0222479) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JIZ8MF_0222479, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0222480) - 1) AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER (REGEX('N[ILV]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, (?thisPositionOn28 - ?thisPositionOn27)))) .
BIND(URI(CONCAT(STR(?this), '#MF_02224a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionQ5JIZ899 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5JIZ8101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5JIZ8MF_0222494 .
?templateMotifSequenceMatchRegionQ5JIZ899 faldo:begin ?templateMotifSequenceMatchBeginQ5JIZ8100 .
?templateMotifSequenceMatchBeginQ5JIZ8100 faldo:position ?templateMotifSequenceMatchBeginPositionQ5JIZ895 ;
faldo:reference isoform:Q5JIZ8-1 .
?templateMotifSequenceProfileAlignmentOperationQ5JIZ8101 edam:has_input signature:MF_02224 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02224105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5JIZ8MF_0222496 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02224104 .
?targetMotifMatchRegionMatchBeginMF_02224104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0222497 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02224105 edam:has_input signature:MF_02224 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5JIZ8MF_0222494, 1, (STRLEN(?templateMotifCigarQ5JIZ8MF_0222494) - STRLEN(REPLACE(?templateMotifCigarQ5JIZ8MF_0222494, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionQ5JIZ895) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5JIZ8MF_0222496, 1, (STRLEN(?targetMotifMatchCigarQ5JIZ8MF_0222496) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JIZ8MF_0222496, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5JIZ8MF_0222496, 1, (STRLEN(?targetMotifMatchCigarQ5JIZ8MF_0222496) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JIZ8MF_0222496, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0222497) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02224a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionQ5JIZ8114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5JIZ8116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5JIZ8MF_02224109 .
?templateMotifSequenceMatchRegionQ5JIZ8114 faldo:begin ?templateMotifSequenceMatchBeginQ5JIZ8115 .
?templateMotifSequenceMatchBeginQ5JIZ8115 faldo:position ?templateMotifSequenceMatchBeginPositionQ5JIZ8110 ;
faldo:reference isoform:Q5JIZ8-1 .
?templateMotifSequenceProfileAlignmentOperationQ5JIZ8116 edam:has_input signature:MF_02224 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02224120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5JIZ8MF_02224111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02224119 .
?targetMotifMatchRegionMatchBeginMF_02224119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02224112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02224120 edam:has_input signature:MF_02224 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5JIZ8MF_02224109, 1, (STRLEN(?templateMotifCigarQ5JIZ8MF_02224109) - STRLEN(REPLACE(?templateMotifCigarQ5JIZ8MF_02224109, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionQ5JIZ8110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5JIZ8MF_02224111, 1, (STRLEN(?targetMotifMatchCigarQ5JIZ8MF_02224111) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JIZ8MF_02224111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5JIZ8MF_02224111, 1, (STRLEN(?targetMotifMatchCigarQ5JIZ8MF_02224111) - STRLEN(REPLACE(?targetMotifMatchCigarQ5JIZ8MF_02224111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_02224112) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02224a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
}
"xsd:string |
