| http://purl.uniprot.org/unirules/MF_02229#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:770309 up:source unirule:MF_02229 .
_:770310 up:source unirule:MF_02229 .
_:770311 up:source unirule:MF_02229 .
_:770312 up:source unirule:MF_02229 .
_:770313 up:source unirule:MF_02229 .
_:770314 up:source unirule:MF_02229 .
_:770315 up:source unirule:MF_02229 .
_:770316 up:source unirule:MF_02229 .
_:770317 up:source unirule:MF_02229 .
_:770318 up:source unirule:MF_02229 .
_:770319 up:source unirule:MF_02229 .
_:770320 up:source unirule:MF_02229 .
_:770321 up:source unirule:MF_02229 .
_:770322 up:source unirule:MF_02229 .
_:770323 up:source unirule:MF_02229 .
_:770324 up:source unirule:MF_02229 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0016861 ,
GO:0019323 ,
keyword:119 ,
keyword:413 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.3.1.-' ;
up:fullName '5-deoxyribose 1-phosphate isomerase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'drdI' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the isomerization of 5-deoxy-alpha-D-ribose 1-phosphate to 5-deoxy-D-ribulose 1-phosphate, as part of a 5-deoxyribose salvage pathway that recycles this toxic radical SAM enzyme by-product to mainstream metabolites.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the EIF-2B alpha/beta/delta subunits family. DrdI subfamily.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf ?molecule12 .
?molecule12 rdfs:label 'substrate' .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf ?molecule20 .
?molecule20 rdfs:label 'substrate' .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf ?molecule34 .
?molecule34 rdfs:label 'substrate' .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf ?molecule42 .
?molecule42 rdfs:label 'substrate' .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
_:770325 a rdf:Statement ;
up:attribution _:770309 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:770326 a rdf:Statement ;
up:attribution _:770310 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:770327 a rdf:Statement ;
up:attribution _:770311 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:770328 a rdf:Statement ;
up:attribution _:770312 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:770329 a rdf:Statement ;
up:attribution _:770313 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:770330 a rdf:Statement ;
up:attribution _:770314 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:770331 a rdf:Statement ;
up:attribution _:770315 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:119 .
_:770332 a rdf:Statement ;
up:attribution _:770316 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:770333 a rdf:Statement ;
up:attribution _:770317 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016861 .
_:770334 a rdf:Statement ;
up:attribution _:770318 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019323 .
_:770335 a rdf:Statement ;
up:source unirule:MF_02229 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:770336 a rdf:Statement ;
up:attribution _:770319 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:770337 a rdf:Statement ;
up:source unirule:MF_02229 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:770338 a rdf:Statement ;
up:attribution _:770320 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:770339 a rdf:Statement ;
up:source unirule:MF_02229 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:770340 a rdf:Statement ;
up:attribution _:770321 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:770341 a rdf:Statement ;
up:source unirule:MF_02229 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:770342 a rdf:Statement ;
up:attribution _:770322 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:770343 a rdf:Statement ;
up:source unirule:MF_02229 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:770344 a rdf:Statement ;
up:attribution _:770323 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:770345 a rdf:Statement ;
up:source unirule:MF_02229 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:770346 a rdf:Statement ;
up:attribution _:770324 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02229
#Rule MF_02229 Created by:? on:2019-09-25 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02229 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_02229a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02229a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_02229a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02229a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_02229a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch55 faldo:location ?templateMotifSequenceMatchRegionP0DTQ156 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0DTQ158 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0DTQ1MF_0222951 .
?templateMotifSequenceMatchRegionP0DTQ156 faldo:begin ?templateMotifSequenceMatchBeginP0DTQ157 .
?templateMotifSequenceMatchBeginP0DTQ157 faldo:position ?templateMotifSequenceMatchBeginPositionP0DTQ152 ;
faldo:reference isoform:P0DTQ1-1 .
?templateMotifSequenceProfileAlignmentOperationP0DTQ158 edam:has_input signature:MF_02229 ;
rdf:type edam:operation_0300 .
?targetMotifMatch59 faldo:location ?targetMotifMatchRegionMatch60 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0222962 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0DTQ1MF_0222953 .
?targetMotifMatchRegionMatch60 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0222961 .
?targetMotifMatchRegionMatchBeginMF_0222961 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0222954 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0222962 edam:has_input signature:MF_02229 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DTQ1MF_0222951, 1, (STRLEN(?templateMotifCigarP0DTQ1MF_0222951) - STRLEN(REPLACE(?templateMotifCigarP0DTQ1MF_0222951, CONCAT('^(?:-*[^-]){', STR(((49 - ?templateMotifSequenceMatchBeginPositionP0DTQ152) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DTQ1MF_0222953, 1, (STRLEN(?targetMotifMatchCigarP0DTQ1MF_0222953) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTQ1MF_0222953, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DTQ1MF_0222953, 1, (STRLEN(?targetMotifMatchCigarP0DTQ1MF_0222953) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTQ1MF_0222953, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0222954) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DTQ1MF_0222951, 1, (STRLEN(?templateMotifCigarP0DTQ1MF_0222951) - STRLEN(REPLACE(?templateMotifCigarP0DTQ1MF_0222951, CONCAT('^(?:-*[^-]){', STR(((51 - ?templateMotifSequenceMatchBeginPositionP0DTQ152) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DTQ1MF_0222953, 1, (STRLEN(?targetMotifMatchCigarP0DTQ1MF_0222953) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTQ1MF_0222953, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DTQ1MF_0222953, 1, (STRLEN(?targetMotifMatchCigarP0DTQ1MF_0222953) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTQ1MF_0222953, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0222954) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, (?thisPositionOn14 - ?thisPositionOn13)) = 'RGA')) .
BIND(URI(CONCAT(STR(?this), '#MF_02229a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP0DTQ173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0DTQ175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0DTQ1MF_0222968 .
?templateMotifSequenceMatchRegionP0DTQ173 faldo:begin ?templateMotifSequenceMatchBeginP0DTQ174 .
?templateMotifSequenceMatchBeginP0DTQ174 faldo:position ?templateMotifSequenceMatchBeginPositionP0DTQ169 ;
faldo:reference isoform:P0DTQ1-1 .
?templateMotifSequenceProfileAlignmentOperationP0DTQ175 edam:has_input signature:MF_02229 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0222979 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0DTQ1MF_0222970 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0222978 .
?targetMotifMatchRegionMatchBeginMF_0222978 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0222971 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0222979 edam:has_input signature:MF_02229 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DTQ1MF_0222968, 1, (STRLEN(?templateMotifCigarP0DTQ1MF_0222968) - STRLEN(REPLACE(?templateMotifCigarP0DTQ1MF_0222968, CONCAT('^(?:-*[^-]){', STR(((250 - ?templateMotifSequenceMatchBeginPositionP0DTQ169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DTQ1MF_0222970, 1, (STRLEN(?targetMotifMatchCigarP0DTQ1MF_0222970) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTQ1MF_0222970, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DTQ1MF_0222970, 1, (STRLEN(?targetMotifMatchCigarP0DTQ1MF_0222970) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTQ1MF_0222970, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0222971) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DTQ1MF_0222968, 1, (STRLEN(?templateMotifCigarP0DTQ1MF_0222968) - STRLEN(REPLACE(?templateMotifCigarP0DTQ1MF_0222968, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP0DTQ169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DTQ1MF_0222970, 1, (STRLEN(?targetMotifMatchCigarP0DTQ1MF_0222970) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTQ1MF_0222970, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DTQ1MF_0222970, 1, (STRLEN(?targetMotifMatchCigarP0DTQ1MF_0222970) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTQ1MF_0222970, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0222971) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)) = 'NK')) .
BIND(URI(CONCAT(STR(?this), '#MF_02229a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionP0DTQ190 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0DTQ192 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0DTQ1MF_0222985 .
?templateMotifSequenceMatchRegionP0DTQ190 faldo:begin ?templateMotifSequenceMatchBeginP0DTQ191 .
?templateMotifSequenceMatchBeginP0DTQ191 faldo:position ?templateMotifSequenceMatchBeginPositionP0DTQ186 ;
faldo:reference isoform:P0DTQ1-1 .
?templateMotifSequenceProfileAlignmentOperationP0DTQ192 edam:has_input signature:MF_02229 ;
rdf:type edam:operation_0300 .
?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0222996 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0DTQ1MF_0222987 .
?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0222995 .
?targetMotifMatchRegionMatchBeginMF_0222995 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0222988 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0222996 edam:has_input signature:MF_02229 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DTQ1MF_0222985, 1, (STRLEN(?templateMotifCigarP0DTQ1MF_0222985) - STRLEN(REPLACE(?templateMotifCigarP0DTQ1MF_0222985, CONCAT('^(?:-*[^-]){', STR(((240 - ?templateMotifSequenceMatchBeginPositionP0DTQ186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DTQ1MF_0222987, 1, (STRLEN(?targetMotifMatchCigarP0DTQ1MF_0222987) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTQ1MF_0222987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DTQ1MF_0222987, 1, (STRLEN(?targetMotifMatchCigarP0DTQ1MF_0222987) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTQ1MF_0222987, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0222988) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_02229a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionP0DTQ1105 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0DTQ1107 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0DTQ1MF_02229100 .
?templateMotifSequenceMatchRegionP0DTQ1105 faldo:begin ?templateMotifSequenceMatchBeginP0DTQ1106 .
?templateMotifSequenceMatchBeginP0DTQ1106 faldo:position ?templateMotifSequenceMatchBeginPositionP0DTQ1101 ;
faldo:reference isoform:P0DTQ1-1 .
?templateMotifSequenceProfileAlignmentOperationP0DTQ1107 edam:has_input signature:MF_02229 ;
rdf:type edam:operation_0300 .
?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02229111 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0DTQ1MF_02229102 .
?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02229110 .
?targetMotifMatchRegionMatchBeginMF_02229110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02229103 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02229111 edam:has_input signature:MF_02229 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DTQ1MF_02229100, 1, (STRLEN(?templateMotifCigarP0DTQ1MF_02229100) - STRLEN(REPLACE(?templateMotifCigarP0DTQ1MF_02229100, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionP0DTQ1101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DTQ1MF_02229102, 1, (STRLEN(?targetMotifMatchCigarP0DTQ1MF_02229102) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTQ1MF_02229102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DTQ1MF_02229102, 1, (STRLEN(?targetMotifMatchCigarP0DTQ1MF_02229102) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTQ1MF_02229102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_02229103) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_02229a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionP0DTQ1120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0DTQ1122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0DTQ1MF_02229115 .
?templateMotifSequenceMatchRegionP0DTQ1120 faldo:begin ?templateMotifSequenceMatchBeginP0DTQ1121 .
?templateMotifSequenceMatchBeginP0DTQ1121 faldo:position ?templateMotifSequenceMatchBeginPositionP0DTQ1116 ;
faldo:reference isoform:P0DTQ1-1 .
?templateMotifSequenceProfileAlignmentOperationP0DTQ1122 edam:has_input signature:MF_02229 ;
rdf:type edam:operation_0300 .
?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02229126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0DTQ1MF_02229117 .
?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02229125 .
?targetMotifMatchRegionMatchBeginMF_02229125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02229118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02229126 edam:has_input signature:MF_02229 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DTQ1MF_02229115, 1, (STRLEN(?templateMotifCigarP0DTQ1MF_02229115) - STRLEN(REPLACE(?templateMotifCigarP0DTQ1MF_02229115, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionP0DTQ1116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DTQ1MF_02229117, 1, (STRLEN(?targetMotifMatchCigarP0DTQ1MF_02229117) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTQ1MF_02229117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DTQ1MF_02229117, 1, (STRLEN(?targetMotifMatchCigarP0DTQ1MF_02229117) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTQ1MF_02229117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_02229118) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_02229a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionP0DTQ1135 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0DTQ1137 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0DTQ1MF_02229130 .
?templateMotifSequenceMatchRegionP0DTQ1135 faldo:begin ?templateMotifSequenceMatchBeginP0DTQ1136 .
?templateMotifSequenceMatchBeginP0DTQ1136 faldo:position ?templateMotifSequenceMatchBeginPositionP0DTQ1131 ;
faldo:reference isoform:P0DTQ1-1 .
?templateMotifSequenceProfileAlignmentOperationP0DTQ1137 edam:has_input signature:MF_02229 ;
rdf:type edam:operation_0300 .
?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_02229141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0DTQ1MF_02229132 .
?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_02229140 .
?targetMotifMatchRegionMatchBeginMF_02229140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_02229133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_02229141 edam:has_input signature:MF_02229 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0DTQ1MF_02229130, 1, (STRLEN(?templateMotifCigarP0DTQ1MF_02229130) - STRLEN(REPLACE(?templateMotifCigarP0DTQ1MF_02229130, CONCAT('^(?:-*[^-]){', STR(((160 - ?templateMotifSequenceMatchBeginPositionP0DTQ1131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0DTQ1MF_02229132, 1, (STRLEN(?targetMotifMatchCigarP0DTQ1MF_02229132) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTQ1MF_02229132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0DTQ1MF_02229132, 1, (STRLEN(?targetMotifMatchCigarP0DTQ1MF_02229132) - STRLEN(REPLACE(?targetMotifMatchCigarP0DTQ1MF_02229132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_02229133) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_02229a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
}
"xsd:string |
