| http://purl.uniprot.org/unirules/MF_02232#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:771188 up:source unirule:MF_02232 .
_:771189 up:source unirule:MF_02232 .
_:771190 up:source unirule:MF_02232 .
_:771191 up:source unirule:MF_02232 .
_:771192 up:source unirule:MF_02232 .
_:771193 up:source unirule:MF_02232 .
_:771194 up:source unirule:MF_02232 .
_:771195 up:source unirule:MF_02232 .
_:771196 up:source unirule:MF_02232 .
_:771197 up:source unirule:MF_02232 .
_:771198 up:source unirule:MF_02232 .
_:771199 up:source unirule:MF_02232 .
_:771200 up:source unirule:MF_02232 .
_:771201 up:source unirule:MF_02232 .
_:771202 up:source unirule:MF_02232 .
_:771203 up:source unirule:MF_02232 .
_:771204 up:source unirule:MF_02232 .
_:771205 up:source unirule:MF_02232 .
_:771206 up:source unirule:MF_02232 .
_:771207 up:source unirule:MF_02232 .
_:771208 up:source unirule:MF_02232 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation10 ,
?annotation11 ,
?annotation12 ;
up:classifiedWith GO:0006744 ,
keyword:831 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.97.1.15' ;
up:fullName 'Ubiquinone biosynthesis hydroxylase UbiU' ;
rdf:type up:Structured_Name .
?name1 up:fullName '2-(all-trans-polyprenyl)phenol 6-hydroxylase subunit UbiU' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'ubiU' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Component of the UbiUV hydroxylase, which is involved in the oxygen-independent ubiquinone (coenzyme Q) biosynthesis. It catalyzes the three hydroxylation steps, using prephenate as the oxygen donor.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 up:activity ?activity9 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity9 up:catalyticActivity ;
up:enzymeClass .
?annotation10 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; ubiquinone biosynthesis.' .
?annotation11 a up:Subunit_Annotation ;
rdfs:comment 'Forms a heterodimer with UbiV.' .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the peptidase U32 family. UbiU subfamily.' .
?case13 up:classifiedWith GO:0051539 ,
keyword:408 ,
keyword:411 ,
keyword:479 ,
keyword:4 .
?pfs14 up:annotation ?annotation15 ,
?annotation21 ,
?annotation27 ,
?annotation33 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:49883 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:49883 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:49883 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:49883 .
_:771209 a rdf:Statement ;
up:attribution _:771188 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:771210 a rdf:Statement ;
up:attribution _:771189 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:771211 a rdf:Statement ;
up:attribution _:771190 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:771212 a rdf:Statement ;
up:attribution _:771191 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:771213 a rdf:Statement ;
up:attribution _:771192 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:771214 a rdf:Statement ;
up:attribution _:771193 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:771215 a rdf:Statement ;
up:attribution _:771194 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:771216 a rdf:Statement ;
up:attribution _:771195 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:771217 a rdf:Statement ;
up:attribution _:771196 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:771218 a rdf:Statement ;
up:attribution _:771197 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:771219 a rdf:Statement ;
up:attribution _:771198 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:831 .
_:771220 a rdf:Statement ;
up:attribution _:771199 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006744 .
_:771221 a rdf:Statement ;
up:attribution _:771200 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:4 .
_:771222 a rdf:Statement ;
up:attribution _:771201 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:408 .
_:771223 a rdf:Statement ;
up:attribution _:771202 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:411 .
_:771224 a rdf:Statement ;
up:attribution _:771203 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:771225 a rdf:Statement ;
up:attribution _:771204 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051539 .
_:771226 a rdf:Statement ;
up:source unirule:MF_02232 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:771227 a rdf:Statement ;
up:attribution _:771205 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:771228 a rdf:Statement ;
up:source unirule:MF_02232 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:771229 a rdf:Statement ;
up:attribution _:771206 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:771230 a rdf:Statement ;
up:source unirule:MF_02232 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:771231 a rdf:Statement ;
up:attribution _:771207 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:771232 a rdf:Statement ;
up:source unirule:MF_02232 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:771233 a rdf:Statement ;
up:attribution _:771208 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_02232
#Rule MF_02232 Created by:? on:2019-10-01 Modified by:Catherine Rivoire on:2025-04-08
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_02232 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_02232a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_02232a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_02232a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_02232a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_02232a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_02232a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_02232a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_02232a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_02232a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch43 faldo:location ?templateMotifSequenceMatchRegionP4552744 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4552746 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP45527MF_0223239 .
?templateMotifSequenceMatchRegionP4552744 faldo:begin ?templateMotifSequenceMatchBeginP4552745 .
?templateMotifSequenceMatchBeginP4552745 faldo:position ?templateMotifSequenceMatchBeginPositionP4552740 ;
faldo:reference isoform:P45527-1 .
?templateMotifSequenceProfileAlignmentOperationP4552746 edam:has_input signature:MF_02232 ;
rdf:type edam:operation_0300 .
?targetMotifMatch47 faldo:location ?targetMotifMatchRegionMatch48 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0223250 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP45527MF_0223241 .
?targetMotifMatchRegionMatch48 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0223249 .
?targetMotifMatchRegionMatchBeginMF_0223249 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0223242 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0223250 edam:has_input signature:MF_02232 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45527MF_0223239, 1, (STRLEN(?templateMotifCigarP45527MF_0223239) - STRLEN(REPLACE(?templateMotifCigarP45527MF_0223239, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionP4552740) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45527MF_0223241, 1, (STRLEN(?targetMotifMatchCigarP45527MF_0223241) - STRLEN(REPLACE(?targetMotifMatchCigarP45527MF_0223241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45527MF_0223241, 1, (STRLEN(?targetMotifMatchCigarP45527MF_0223241) - STRLEN(REPLACE(?targetMotifMatchCigarP45527MF_0223241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0223242) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45527MF_0223239, 1, (STRLEN(?templateMotifCigarP45527MF_0223239) - STRLEN(REPLACE(?templateMotifCigarP45527MF_0223239, CONCAT('^(?:-*[^-]){', STR(((176 - ?templateMotifSequenceMatchBeginPositionP4552740) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45527MF_0223241, 1, (STRLEN(?targetMotifMatchCigarP45527MF_0223241) - STRLEN(REPLACE(?targetMotifMatchCigarP45527MF_0223241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45527MF_0223241, 1, (STRLEN(?targetMotifMatchCigarP45527MF_0223241) - STRLEN(REPLACE(?targetMotifMatchCigarP45527MF_0223241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0223242) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45527MF_0223239, 1, (STRLEN(?templateMotifCigarP45527MF_0223239) - STRLEN(REPLACE(?templateMotifCigarP45527MF_0223239, CONCAT('^(?:-*[^-]){', STR(((193 - ?templateMotifSequenceMatchBeginPositionP4552740) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45527MF_0223241, 1, (STRLEN(?targetMotifMatchCigarP45527MF_0223241) - STRLEN(REPLACE(?targetMotifMatchCigarP45527MF_0223241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45527MF_0223241, 1, (STRLEN(?targetMotifMatchCigarP45527MF_0223241) - STRLEN(REPLACE(?targetMotifMatchCigarP45527MF_0223241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0223242) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP45527MF_0223239, 1, (STRLEN(?templateMotifCigarP45527MF_0223239) - STRLEN(REPLACE(?templateMotifCigarP45527MF_0223239, CONCAT('^(?:-*[^-]){', STR(((232 - ?templateMotifSequenceMatchBeginPositionP4552740) + 1)), '}'), '')))), '[a-z]', '')) AS ?step160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP45527MF_0223241, 1, (STRLEN(?targetMotifMatchCigarP45527MF_0223241) - STRLEN(REPLACE(?targetMotifMatchCigarP45527MF_0223241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP45527MF_0223241, 1, (STRLEN(?targetMotifMatchCigarP45527MF_0223241) - STRLEN(REPLACE(?targetMotifMatchCigarP45527MF_0223241, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step160), '}'), '')))), '[^-]', ''))) AS ?step261) .
BIND(((?step261 + ?targetMotifMatchRegionMatchBeginPositionMF_0223242) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'C')) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag63) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag63, ?UNBOUND_VARIABLE) AS ?case13) .
}
"xsd:string |
