| http://purl.uniprot.org/unirules/MF_03000#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:779479 up:source unirule:MF_03000 .
_:779480 up:source unirule:MF_03000 .
_:779481 up:source unirule:MF_03000 .
_:779482 up:source unirule:MF_03000 .
_:779483 up:source unirule:MF_03000 .
_:779484 up:source unirule:MF_03000 .
_:779485 up:source unirule:MF_03000 .
_:779486 up:source unirule:MF_03000 .
_:779487 up:source unirule:MF_03000 .
_:779488 up:source unirule:MF_03000 .
_:779489 up:source unirule:MF_03000 .
_:779490 up:source unirule:MF_03000 .
_:779491 up:source unirule:MF_03000 .
_:779492 up:source unirule:MF_03000 .
_:779493 up:source unirule:MF_03000 .
_:779494 up:source unirule:MF_03000 .
_:779495 up:source unirule:MF_03000 .
_:779496 up:source unirule:MF_03000 .
_:779497 up:source unirule:MF_03000 .
_:779498 up:source unirule:MF_03000 .
_:779499 up:source unirule:MF_03000 .
_:779500 up:source unirule:MF_03000 .
?this up:annotation ?annotation0 ,
?annotation2 ;
up:classifiedWith GO:0001732 ,
GO:0002183 ,
GO:0003723 ,
GO:0003743 ,
GO:0005737 ,
GO:0005852 ,
GO:0016282 ,
GO:0033290 ,
keyword:396 ,
keyword:648 ,
keyword:694 ,
keyword:963 .
?annotation0 a up:Subcellular_Location_Annotation .
?annotation0li1 up:cellularComponent .
?annotation2 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the eIF-3 subunit A family.' .
?case4 up:classifiedWith keyword:597 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with EIF3B' .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
rdf:type up:Initiator_Methionine_Annotation ;
rdfs:comment 'Removed' .
?pfsb46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?sam50 up:classifiedWith keyword:175 .
?coiledCoil51 faldo:begin ?coiledCoilb52 ;
faldo:end ?coiledCoile53 .
?coiledCoilb52 faldo:position ?coiledCoilbp54 .
?coiledCoile53 faldo:position ?coiledCoilep55 .
?keyword56 up:range ?coiledCoil51 .
_:779501 a rdf:Statement ;
up:attribution _:779479 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:779502 a rdf:Statement ;
up:attribution _:779480 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:779503 a rdf:Statement ;
up:attribution _:779481 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:779504 a rdf:Statement ;
up:attribution _:779482 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:396 .
_:779505 a rdf:Statement ;
up:attribution _:779483 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:779506 a rdf:Statement ;
up:attribution _:779484 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:779507 a rdf:Statement ;
up:attribution _:779485 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003743 .
_:779508 a rdf:Statement ;
up:attribution _:779486 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003723 .
_:779509 a rdf:Statement ;
up:attribution _:779487 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0001732 .
_:779510 a rdf:Statement ;
up:attribution _:779488 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002183 .
_:779511 a rdf:Statement ;
up:attribution _:779489 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:779512 a rdf:Statement ;
up:attribution _:779490 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005852 .
_:779513 a rdf:Statement ;
up:attribution _:779491 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016282 .
_:779514 a rdf:Statement ;
up:attribution _:779492 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0033290 .
_:779515 a rdf:Statement ;
up:attribution _:779493 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:779516 a rdf:Statement ;
up:source unirule:MF_03000 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:779517 a rdf:Statement ;
up:attribution _:779494 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:779518 a rdf:Statement ;
up:source unirule:MF_03000 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:779519 a rdf:Statement ;
up:attribution _:779495 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:779520 a rdf:Statement ;
up:source unirule:MF_03000 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:779521 a rdf:Statement ;
up:attribution _:779496 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:779522 a rdf:Statement ;
up:source unirule:MF_03000 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:779523 a rdf:Statement ;
up:attribution _:779497 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:779524 a rdf:Statement ;
up:source unirule:MF_03000 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:779525 a rdf:Statement ;
up:attribution _:779498 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:779526 a rdf:Statement ;
up:source unirule:MF_03000 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:779527 a rdf:Statement ;
up:attribution _:779499 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:779528 a rdf:Statement ;
up:attribution _:779500 ;
rdf:subject ?sam50 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03000
#Rule MF_03000 Created by:? on:2009-02-12 Modified by:Edouard de Castro on:2019-11-20
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03000 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03000a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03000a2')) AS ?annotation2) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionQ1415262 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ1415264 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ14152MF_0300057 .
?templateMotifSequenceMatchRegionQ1415262 faldo:begin ?templateMotifSequenceMatchBeginQ1415263 .
?templateMotifSequenceMatchBeginQ1415263 faldo:position ?templateMotifSequenceMatchBeginPositionQ1415258 ;
faldo:reference isoform:Q14152-1 .
?templateMotifSequenceProfileAlignmentOperationQ1415264 edam:has_input signature:MF_03000 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0300068 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ14152MF_0300059 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0300067 .
?targetMotifMatchRegionMatchBeginMF_0300067 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0300060 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0300068 edam:has_input signature:MF_03000 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ14152MF_0300057, 1, (STRLEN(?templateMotifCigarQ14152MF_0300057) - STRLEN(REPLACE(?templateMotifCigarQ14152MF_0300057, CONCAT('^(?:-*[^-]){', STR(((664 - ?templateMotifSequenceMatchBeginPositionQ1415258) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ14152MF_0300059, 1, (STRLEN(?targetMotifMatchCigarQ14152MF_0300059) - STRLEN(REPLACE(?targetMotifMatchCigarQ14152MF_0300059, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ14152MF_0300059, 1, (STRLEN(?targetMotifMatchCigarQ14152MF_0300059) - STRLEN(REPLACE(?targetMotifMatchCigarQ14152MF_0300059, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0300060) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ14152MF_0300057, 1, (STRLEN(?templateMotifCigarQ14152MF_0300057) - STRLEN(REPLACE(?templateMotifCigarQ14152MF_0300057, CONCAT('^(?:-*[^-]){', STR(((835 - ?templateMotifSequenceMatchBeginPositionQ1415258) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ14152MF_0300059, 1, (STRLEN(?targetMotifMatchCigarQ14152MF_0300059) - STRLEN(REPLACE(?targetMotifMatchCigarQ14152MF_0300059, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ14152MF_0300059, 1, (STRLEN(?targetMotifMatchCigarQ14152MF_0300059) - STRLEN(REPLACE(?targetMotifMatchCigarQ14152MF_0300059, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0300060) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) .
BIND(URI(CONCAT(STR(?this), '#MF_03000a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionQ1415279 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ1415281 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ14152MF_0300074 .
?templateMotifSequenceMatchRegionQ1415279 faldo:begin ?templateMotifSequenceMatchBeginQ1415280 .
?templateMotifSequenceMatchBeginQ1415280 faldo:position ?templateMotifSequenceMatchBeginPositionQ1415275 ;
faldo:reference isoform:Q14152-1 .
?templateMotifSequenceProfileAlignmentOperationQ1415281 edam:has_input signature:MF_03000 ;
rdf:type edam:operation_0300 .
?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0300085 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ14152MF_0300076 .
?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0300084 .
?targetMotifMatchRegionMatchBeginMF_0300084 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0300077 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0300085 edam:has_input signature:MF_03000 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ14152MF_0300074, 1, (STRLEN(?templateMotifCigarQ14152MF_0300074) - STRLEN(REPLACE(?templateMotifCigarQ14152MF_0300074, CONCAT('^(?:-*[^-]){', STR(((881 - ?templateMotifSequenceMatchBeginPositionQ1415275) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ14152MF_0300076, 1, (STRLEN(?targetMotifMatchCigarQ14152MF_0300076) - STRLEN(REPLACE(?targetMotifMatchCigarQ14152MF_0300076, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ14152MF_0300076, 1, (STRLEN(?targetMotifMatchCigarQ14152MF_0300076) - STRLEN(REPLACE(?targetMotifMatchCigarQ14152MF_0300076, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0300077) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03000a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionQ1415294 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ1415296 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ14152MF_0300089 .
?templateMotifSequenceMatchRegionQ1415294 faldo:begin ?templateMotifSequenceMatchBeginQ1415295 .
?templateMotifSequenceMatchBeginQ1415295 faldo:position ?templateMotifSequenceMatchBeginPositionQ1415290 ;
faldo:reference isoform:Q14152-1 .
?templateMotifSequenceProfileAlignmentOperationQ1415296 edam:has_input signature:MF_03000 ;
rdf:type edam:operation_0300 .
?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03000100 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ14152MF_0300091 .
?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0300099 .
?targetMotifMatchRegionMatchBeginMF_0300099 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0300092 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03000100 edam:has_input signature:MF_03000 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ14152MF_0300089, 1, (STRLEN(?templateMotifCigarQ14152MF_0300089) - STRLEN(REPLACE(?templateMotifCigarQ14152MF_0300089, CONCAT('^(?:-*[^-]){', STR(((1198 - ?templateMotifSequenceMatchBeginPositionQ1415290) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ14152MF_0300091, 1, (STRLEN(?targetMotifMatchCigarQ14152MF_0300091) - STRLEN(REPLACE(?targetMotifMatchCigarQ14152MF_0300091, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ14152MF_0300091, 1, (STRLEN(?targetMotifMatchCigarQ14152MF_0300091) - STRLEN(REPLACE(?targetMotifMatchCigarQ14152MF_0300091, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) .
BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0300092) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03000a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionQ14152109 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ14152111 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ14152MF_03000104 .
?templateMotifSequenceMatchRegionQ14152109 faldo:begin ?templateMotifSequenceMatchBeginQ14152110 .
?templateMotifSequenceMatchBeginQ14152110 faldo:position ?templateMotifSequenceMatchBeginPositionQ14152105 ;
faldo:reference isoform:Q14152-1 .
?templateMotifSequenceProfileAlignmentOperationQ14152111 edam:has_input signature:MF_03000 ;
rdf:type edam:operation_0300 .
?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03000115 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ14152MF_03000106 .
?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03000114 .
?targetMotifMatchRegionMatchBeginMF_03000114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03000107 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03000115 edam:has_input signature:MF_03000 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ14152MF_03000104, 1, (STRLEN(?templateMotifCigarQ14152MF_03000104) - STRLEN(REPLACE(?templateMotifCigarQ14152MF_03000104, CONCAT('^(?:-*[^-]){', STR(((1336 - ?templateMotifSequenceMatchBeginPositionQ14152105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ14152MF_03000106, 1, (STRLEN(?targetMotifMatchCigarQ14152MF_03000106) - STRLEN(REPLACE(?targetMotifMatchCigarQ14152MF_03000106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ14152MF_03000106, 1, (STRLEN(?targetMotifMatchCigarQ14152MF_03000106) - STRLEN(REPLACE(?targetMotifMatchCigarQ14152MF_03000106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_03000107) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03000a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch123 faldo:location ?templateMotifSequenceMatchRegionQ14152124 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ14152126 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ14152MF_03000119 .
?templateMotifSequenceMatchRegionQ14152124 faldo:begin ?templateMotifSequenceMatchBeginQ14152125 .
?templateMotifSequenceMatchBeginQ14152125 faldo:position ?templateMotifSequenceMatchBeginPositionQ14152120 ;
faldo:reference isoform:Q14152-1 .
?templateMotifSequenceProfileAlignmentOperationQ14152126 edam:has_input signature:MF_03000 ;
rdf:type edam:operation_0300 .
?targetMotifMatch127 faldo:location ?targetMotifMatchRegionMatch128 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03000130 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ14152MF_03000121 .
?targetMotifMatchRegionMatch128 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03000129 .
?targetMotifMatchRegionMatchBeginMF_03000129 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03000122 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03000130 edam:has_input signature:MF_03000 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ14152MF_03000119, 1, (STRLEN(?templateMotifCigarQ14152MF_03000119) - STRLEN(REPLACE(?templateMotifCigarQ14152MF_03000119, CONCAT('^(?:-*[^-]){', STR(((1364 - ?templateMotifSequenceMatchBeginPositionQ14152120) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1131) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ14152MF_03000121, 1, (STRLEN(?targetMotifMatchCigarQ14152MF_03000121) - STRLEN(REPLACE(?targetMotifMatchCigarQ14152MF_03000121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ14152MF_03000121, 1, (STRLEN(?targetMotifMatchCigarQ14152MF_03000121) - STRLEN(REPLACE(?targetMotifMatchCigarQ14152MF_03000121, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1131), '}'), '')))), '[^-]', ''))) AS ?step2132) .
BIND(((?step2132 + ?targetMotifMatchRegionMatchBeginPositionMF_03000122) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t133) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03000a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch138 faldo:location ?templateMotifSequenceMatchRegionQ14152139 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ14152141 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ14152MF_03000134 .
?templateMotifSequenceMatchRegionQ14152139 faldo:begin ?templateMotifSequenceMatchBeginQ14152140 .
?templateMotifSequenceMatchBeginQ14152140 faldo:position ?templateMotifSequenceMatchBeginPositionQ14152135 ;
faldo:reference isoform:Q14152-1 .
?templateMotifSequenceProfileAlignmentOperationQ14152141 edam:has_input signature:MF_03000 ;
rdf:type edam:operation_0300 .
?targetMotifMatch142 faldo:location ?targetMotifMatchRegionMatch143 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03000145 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ14152MF_03000136 .
?targetMotifMatchRegionMatch143 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03000144 .
?targetMotifMatchRegionMatchBeginMF_03000144 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03000137 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03000145 edam:has_input signature:MF_03000 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ14152MF_03000134, 1, (STRLEN(?templateMotifCigarQ14152MF_03000134) - STRLEN(REPLACE(?templateMotifCigarQ14152MF_03000134, CONCAT('^(?:-*[^-]){', STR(((1 - ?templateMotifSequenceMatchBeginPositionQ14152135) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1146) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ14152MF_03000136, 1, (STRLEN(?targetMotifMatchCigarQ14152MF_03000136) - STRLEN(REPLACE(?targetMotifMatchCigarQ14152MF_03000136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ14152MF_03000136, 1, (STRLEN(?targetMotifMatchCigarQ14152MF_03000136) - STRLEN(REPLACE(?targetMotifMatchCigarQ14152MF_03000136, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1146), '}'), '')))), '[^-]', ''))) AS ?step2147) .
BIND(((?step2147 + ?targetMotifMatchRegionMatchBeginPositionMF_03000137) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs2t148) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'M')) .
BIND(URI(CONCAT(STR(?this), '#MF_03000a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(?this AS ?case3) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case4) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(?this AS ?case5) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4930 .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7214 .
BIND(?this AS ?case7) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:4930 .
})) .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon149 {taxon:7214 taxon:7742}
?thisOrganism rdfs:subClassOf+ ?supertaxon149 .
})) .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon150 {taxon:4751 taxon:6237 taxon:7742}
?thisOrganism rdfs:subClassOf+ ?supertaxon150 .
})) .
BIND(?this AS ?case13) .
}
OPTIONAL {
?this up:annotation ?samcc151 ;
up:sequence ?thisSequence .
?samcc151 up:range ?samccr152 ;
rdf:type up:Coiled_Coil_Annotation .
?samccr152 faldo:begin ?samccb153 ;
faldo:end ?samcce154 .
?samccb153 faldo:position ?samccbp155 ;
faldo:reference ?thisSequence .
?samcce154 faldo:position ?samccep156 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam50) .
}
BIND(URI(CONCAT(STR(?this), '#MF_03000a56')) AS ?keyword56) .
}
"xsd:string |
