| http://purl.uniprot.org/unirules/MF_03023#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:792291 up:source unirule:MF_03023 .
_:792292 up:source unirule:MF_03023 .
_:792293 up:source unirule:MF_03023 .
_:792294 up:source unirule:MF_03023 .
_:792295 up:source unirule:MF_03023 .
_:792296 up:source unirule:MF_03023 .
_:792297 up:source unirule:MF_03023 .
_:792298 up:source unirule:MF_03023 .
_:792299 up:source unirule:MF_03023 .
_:792300 up:source unirule:MF_03023 .
_:792301 up:source unirule:MF_03023 .
_:792302 up:source unirule:MF_03023 .
_:792303 up:source unirule:MF_03023 .
_:792304 up:source unirule:MF_03023 .
_:792305 up:source unirule:MF_03023 .
_:792306 up:source unirule:MF_03023 .
_:792307 up:source unirule:MF_03023 .
_:792308 up:source unirule:MF_03023 .
_:792309 up:source unirule:MF_03023 .
_:792310 up:source unirule:MF_03023 .
_:792311 up:source unirule:MF_03023 .
_:792312 up:source unirule:MF_03023 .
_:792313 up:source unirule:MF_03023 .
_:792314 up:source unirule:MF_03023 .
_:792315 up:source unirule:MF_03023 .
_:792316 up:source unirule:MF_03023 .
_:792317 up:source unirule:MF_03023 .
_:792318 up:source unirule:MF_03023 .
?this up:annotation ?annotation0 ,
?annotation2 ;
up:classifiedWith GO:0005737 ,
GO:0008017 ,
GO:0051013 ,
keyword:206 ,
keyword:413 ,
keyword:493 ,
keyword:547 ,
keyword:67 ,
keyword:963 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:enzymeClass .
?annotation2 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the AAA ATPase family. Katanin p60 subunit A1 subfamily.' .
?case3 up:classifiedWith GO:0005813 ,
GO:0005819 ,
keyword:131 ,
keyword:132 .
?case4 up:classifiedWith keyword:597 ,
keyword:832 .
?case5 up:alternativeName ?name7 ,
?name8 ;
up:classifiedWith keyword:469 ;
up:recommendedName ?name6 .
?name6 up:ecName '5.6.1.1' ;
up:fullName 'Meiotic spindle formation protein mei-1' ;
rdf:type up:Structured_Name .
?name7 up:fullName 'Katanin p60 ATPase-containing subunit A1' ;
up:shortName 'Katanin p60 subunit A1' ;
rdf:type up:Structured_Name .
?name8 up:fullName 'p60 katanin' ;
rdf:type up:Structured_Name .
?case10 up:alternativeName ?name12 ;
up:recommendedName ?name11 .
?name11 up:ecName '5.6.1.1' ;
up:fullName 'Katanin p60 ATPase-containing subunit A1' ;
up:shortName 'Katanin p60 subunit A1' ;
rdf:type up:Structured_Name .
?name12 up:fullName 'p60 katanin' ;
rdf:type up:Structured_Name .
?case13 up:classifiedWith keyword:498 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:30616 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by DYRK2' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by DYRK2' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphothreonine; by DYRK2' .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
_:792319 a rdf:Statement ;
up:attribution _:792291 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:792320 a rdf:Statement ;
up:attribution _:792292 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:792321 a rdf:Statement ;
up:attribution _:792293 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:792322 a rdf:Statement ;
up:attribution _:792294 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:792323 a rdf:Statement ;
up:attribution _:792295 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:206 .
_:792324 a rdf:Statement ;
up:attribution _:792296 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:792325 a rdf:Statement ;
up:attribution _:792297 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:493 .
_:792326 a rdf:Statement ;
up:attribution _:792298 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:792327 a rdf:Statement ;
up:attribution _:792299 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008017 .
_:792328 a rdf:Statement ;
up:attribution _:792300 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051013 .
_:792329 a rdf:Statement ;
up:attribution _:792301 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:792330 a rdf:Statement ;
up:attribution _:792302 ;
rdf:subject ?case3 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:131 .
_:792331 a rdf:Statement ;
up:attribution _:792303 ;
rdf:subject ?case3 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:132 .
_:792332 a rdf:Statement ;
up:attribution _:792304 ;
rdf:subject ?case3 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005813 .
_:792333 a rdf:Statement ;
up:attribution _:792305 ;
rdf:subject ?case3 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005819 .
_:792334 a rdf:Statement ;
up:attribution _:792306 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:792335 a rdf:Statement ;
up:attribution _:792307 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:832 .
_:792336 a rdf:Statement ;
up:attribution _:792308 ;
rdf:subject ?case5 ;
rdf:predicate up:recommendedName ;
rdf:object ?name6 .
_:792337 a rdf:Statement ;
up:attribution _:792309 ;
rdf:subject ?case5 ;
rdf:predicate up:alternativeName ;
rdf:object ?name7 .
_:792338 a rdf:Statement ;
up:attribution _:792310 ;
rdf:subject ?case5 ;
rdf:predicate up:alternativeName ;
rdf:object ?name8 .
_:792339 a rdf:Statement ;
up:attribution _:792311 ;
rdf:subject ?case5 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:469 .
_:792340 a rdf:Statement ;
up:attribution _:792312 ;
rdf:subject ?case10 ;
rdf:predicate up:recommendedName ;
rdf:object ?name11 .
_:792341 a rdf:Statement ;
up:attribution _:792313 ;
rdf:subject ?case10 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:792342 a rdf:Statement ;
up:attribution _:792314 ;
rdf:subject ?case13 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:498 .
_:792343 a rdf:Statement ;
up:source unirule:MF_03023 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:792344 a rdf:Statement ;
up:attribution _:792315 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:792345 a rdf:Statement ;
up:source unirule:MF_03023 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:792346 a rdf:Statement ;
up:attribution _:792316 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:792347 a rdf:Statement ;
up:source unirule:MF_03023 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:792348 a rdf:Statement ;
up:attribution _:792317 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:792349 a rdf:Statement ;
up:source unirule:MF_03023 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:792350 a rdf:Statement ;
up:attribution _:792318 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03023
#Rule MF_03023 Created by:? on:2009-02-20 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03023 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03023a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03023a2')) AS ?annotation2) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch44 faldo:location ?templateMotifSequenceMatchRegionO7544945 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO7544947 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO75449MF_0302340 .
?templateMotifSequenceMatchRegionO7544945 faldo:begin ?templateMotifSequenceMatchBeginO7544946 .
?templateMotifSequenceMatchBeginO7544946 faldo:position ?templateMotifSequenceMatchBeginPositionO7544941 ;
faldo:reference isoform:O75449-1 .
?templateMotifSequenceProfileAlignmentOperationO7544947 edam:has_input signature:MF_03023 ;
rdf:type edam:operation_0300 .
?targetMotifMatch48 faldo:location ?targetMotifMatchRegionMatch49 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0302351 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO75449MF_0302342 .
?targetMotifMatchRegionMatch49 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0302350 .
?targetMotifMatchRegionMatchBeginMF_0302350 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0302343 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0302351 edam:has_input signature:MF_03023 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO75449MF_0302340, 1, (STRLEN(?templateMotifCigarO75449MF_0302340) - STRLEN(REPLACE(?templateMotifCigarO75449MF_0302340, CONCAT('^(?:-*[^-]){', STR(((249 - ?templateMotifSequenceMatchBeginPositionO7544941) + 1)), '}'), '')))), '[a-z]', '')) AS ?step152) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO75449MF_0302342, 1, (STRLEN(?targetMotifMatchCigarO75449MF_0302342) - STRLEN(REPLACE(?targetMotifMatchCigarO75449MF_0302342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO75449MF_0302342, 1, (STRLEN(?targetMotifMatchCigarO75449MF_0302342) - STRLEN(REPLACE(?targetMotifMatchCigarO75449MF_0302342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step152), '}'), '')))), '[^-]', ''))) AS ?step253) .
BIND(((?step253 + ?targetMotifMatchRegionMatchBeginPositionMF_0302343) - 1) AS ?thisPositionOn20) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO75449MF_0302340, 1, (STRLEN(?templateMotifCigarO75449MF_0302340) - STRLEN(REPLACE(?templateMotifCigarO75449MF_0302340, CONCAT('^(?:-*[^-]){', STR(((256 - ?templateMotifSequenceMatchBeginPositionO7544941) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO75449MF_0302342, 1, (STRLEN(?targetMotifMatchCigarO75449MF_0302342) - STRLEN(REPLACE(?targetMotifMatchCigarO75449MF_0302342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO75449MF_0302342, 1, (STRLEN(?targetMotifMatchCigarO75449MF_0302342) - STRLEN(REPLACE(?targetMotifMatchCigarO75449MF_0302342, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0302343) - 1) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)) = 'GPPGTGKT')) .
BIND(URI(CONCAT(STR(?this), '#MF_03023a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionO7544962 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO7544964 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO75449MF_0302357 .
?templateMotifSequenceMatchRegionO7544962 faldo:begin ?templateMotifSequenceMatchBeginO7544963 .
?templateMotifSequenceMatchBeginO7544963 faldo:position ?templateMotifSequenceMatchBeginPositionO7544958 ;
faldo:reference isoform:O75449-1 .
?templateMotifSequenceProfileAlignmentOperationO7544964 edam:has_input signature:MF_03023 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0302368 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO75449MF_0302359 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0302367 .
?targetMotifMatchRegionMatchBeginMF_0302367 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0302360 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0302368 edam:has_input signature:MF_03023 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO75449MF_0302357, 1, (STRLEN(?templateMotifCigarO75449MF_0302357) - STRLEN(REPLACE(?templateMotifCigarO75449MF_0302357, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionO7544958) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO75449MF_0302359, 1, (STRLEN(?targetMotifMatchCigarO75449MF_0302359) - STRLEN(REPLACE(?targetMotifMatchCigarO75449MF_0302359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO75449MF_0302359, 1, (STRLEN(?targetMotifMatchCigarO75449MF_0302359) - STRLEN(REPLACE(?targetMotifMatchCigarO75449MF_0302359, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0302360) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs2t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03023a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch76 faldo:location ?templateMotifSequenceMatchRegionO7544977 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO7544979 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO75449MF_0302372 .
?templateMotifSequenceMatchRegionO7544977 faldo:begin ?templateMotifSequenceMatchBeginO7544978 .
?templateMotifSequenceMatchBeginO7544978 faldo:position ?templateMotifSequenceMatchBeginPositionO7544973 ;
faldo:reference isoform:O75449-1 .
?templateMotifSequenceProfileAlignmentOperationO7544979 edam:has_input signature:MF_03023 ;
rdf:type edam:operation_0300 .
?targetMotifMatch80 faldo:location ?targetMotifMatchRegionMatch81 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0302383 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO75449MF_0302374 .
?targetMotifMatchRegionMatch81 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0302382 .
?targetMotifMatchRegionMatchBeginMF_0302382 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0302375 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0302383 edam:has_input signature:MF_03023 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO75449MF_0302372, 1, (STRLEN(?templateMotifCigarO75449MF_0302372) - STRLEN(REPLACE(?templateMotifCigarO75449MF_0302372, CONCAT('^(?:-*[^-]){', STR(((109 - ?templateMotifSequenceMatchBeginPositionO7544973) + 1)), '}'), '')))), '[a-z]', '')) AS ?step184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO75449MF_0302374, 1, (STRLEN(?targetMotifMatchCigarO75449MF_0302374) - STRLEN(REPLACE(?targetMotifMatchCigarO75449MF_0302374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO75449MF_0302374, 1, (STRLEN(?targetMotifMatchCigarO75449MF_0302374) - STRLEN(REPLACE(?targetMotifMatchCigarO75449MF_0302374, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step184), '}'), '')))), '[^-]', ''))) AS ?step285) .
BIND(((?step285 + ?targetMotifMatchRegionMatchBeginPositionMF_0302375) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs2t86) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_03023a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch91 faldo:location ?templateMotifSequenceMatchRegionO7544992 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO7544994 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO75449MF_0302387 .
?templateMotifSequenceMatchRegionO7544992 faldo:begin ?templateMotifSequenceMatchBeginO7544993 .
?templateMotifSequenceMatchBeginO7544993 faldo:position ?templateMotifSequenceMatchBeginPositionO7544988 ;
faldo:reference isoform:O75449-1 .
?templateMotifSequenceProfileAlignmentOperationO7544994 edam:has_input signature:MF_03023 ;
rdf:type edam:operation_0300 .
?targetMotifMatch95 faldo:location ?targetMotifMatchRegionMatch96 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0302398 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO75449MF_0302389 .
?targetMotifMatchRegionMatch96 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0302397 .
?targetMotifMatchRegionMatchBeginMF_0302397 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0302390 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0302398 edam:has_input signature:MF_03023 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO75449MF_0302387, 1, (STRLEN(?templateMotifCigarO75449MF_0302387) - STRLEN(REPLACE(?templateMotifCigarO75449MF_0302387, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionO7544988) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO75449MF_0302389, 1, (STRLEN(?targetMotifMatchCigarO75449MF_0302389) - STRLEN(REPLACE(?targetMotifMatchCigarO75449MF_0302389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO75449MF_0302389, 1, (STRLEN(?targetMotifMatchCigarO75449MF_0302389) - STRLEN(REPLACE(?targetMotifMatchCigarO75449MF_0302389, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0302390) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs2t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_03023a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
BIND(?this AS ?case3) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case4) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case5) .
BIND(URI(CONCAT(STR(?this), '#MF_03023a6')) AS ?name6) .
BIND(URI(CONCAT(STR(?this), '#MF_03023a7')) AS ?name7) .
BIND(URI(CONCAT(STR(?this), '#MF_03023a8')) AS ?name8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:33208 .
})) .
BIND(?this AS ?case9) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:6237 .
})) .
BIND(?this AS ?case10) .
BIND(URI(CONCAT(STR(?this), '#MF_03023a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_03023a12')) AS ?name12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:6237 .
})) .
BIND(?this AS ?case13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:33208 .
FILTER (! (EXISTS {
VALUES ?supertaxon102 {taxon:6237 taxon:40674}
?thisOrganism rdfs:subClassOf+ ?supertaxon102 .
})) .
BIND(?this AS ?case14) .
}
}
"xsd:string |
