| http://purl.uniprot.org/unirules/MF_03111#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:819318 up:source unirule:MF_03111 .
_:819319 up:source unirule:MF_03111 .
_:819320 up:source unirule:MF_03111 .
_:819321 up:source unirule:MF_03111 .
_:819322 up:source unirule:MF_03111 .
_:819323 up:source unirule:MF_03111 .
_:819324 up:source unirule:MF_03111 .
_:819325 up:source unirule:MF_03111 .
_:819326 up:source unirule:MF_03111 .
_:819327 up:source unirule:MF_03111 .
_:819328 up:source unirule:MF_03111 .
_:819329 up:source unirule:MF_03111 .
_:819330 up:source unirule:MF_03111 .
_:819331 up:source unirule:MF_03111 .
_:819332 up:source unirule:MF_03111 .
_:819333 up:source unirule:MF_03111 .
_:819334 up:source unirule:MF_03111 .
_:819335 up:source unirule:MF_03111 .
_:819336 up:source unirule:MF_03111 .
_:819337 up:source unirule:MF_03111 .
_:819338 up:source unirule:MF_03111 .
_:819339 up:source unirule:MF_03111 .
_:819340 up:source unirule:MF_03111 .
_:819341 up:source unirule:MF_03111 .
_:819342 up:source unirule:MF_03111 .
?this up:annotation ?annotation0 ,
?annotation1 ,
?annotation2 ,
?annotation4 ;
up:classifiedWith GO:0006744 ,
GO:0008270 ,
GO:0016831 ,
GO:0031314 ,
keyword:456 ,
keyword:472 ,
keyword:479 ,
keyword:496 ,
keyword:831 ,
keyword:862 ,
keyword:999 .
?annotation0 up:cofactor chebi:29105 ;
rdf:type up:Cofactor_Annotation .
?annotation1 a up:Pathway_Annotation ;
rdfs:comment 'Cofactor biosynthesis; ubiquinone biosynthesis.' .
?annotation2 a up:Subcellular_Location_Annotation .
?annotation2li3 up:cellularComponent ;
up:orientation ;
up:topology .
?annotation4 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the COQ4 family.' .
?case7 up:alternativeName ?name10 ,
?name11 ;
up:recommendedName ?name8 .
?name8 up:fullName ?nameValue9 ;
rdf:type up:Structured_Name .
?name10 up:fullName 'Coenzyme Q biosynthesis protein 4' ;
rdf:type up:Structured_Name .
?name11 up:ecName '4.1.1.130' ;
up:fullName '4-hydroxy-3-methoxy-5-polyprenylbenzoate decarboxylase' ;
rdf:type up:Structured_Name .
?case14 up:alternativeName ?name16 ,
?name17 ;
up:recommendedName ?name15 .
?name15 up:fullName 'Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial' ;
rdf:type up:Structured_Name .
?name16 up:fullName 'Coenzyme Q biosynthesis protein 4 homolog' ;
rdf:type up:Structured_Name .
?name17 up:ecName '4.1.1.130' ;
up:fullName '4-hydroxy-3-methoxy-5-polyprenylbenzoate decarboxylase' ;
rdf:type up:Structured_Name .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:29105 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:29105 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:29105 .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf chebi:29105 .
_:819343 a rdf:Statement ;
up:attribution _:819318 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:819344 a rdf:Statement ;
up:attribution _:819319 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:819345 a rdf:Statement ;
up:attribution _:819320 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:819346 a rdf:Statement ;
up:attribution _:819321 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:819347 a rdf:Statement ;
up:attribution _:819322 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:819348 a rdf:Statement ;
up:attribution _:819323 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:819349 a rdf:Statement ;
up:attribution _:819324 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:819350 a rdf:Statement ;
up:attribution _:819325 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:819351 a rdf:Statement ;
up:attribution _:819326 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:999 .
_:819352 a rdf:Statement ;
up:attribution _:819327 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:831 .
_:819353 a rdf:Statement ;
up:attribution _:819328 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:819354 a rdf:Statement ;
up:attribution _:819329 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016831 .
_:819355 a rdf:Statement ;
up:attribution _:819330 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:819356 a rdf:Statement ;
up:attribution _:819331 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0031314 .
_:819357 a rdf:Statement ;
up:attribution _:819332 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006744 .
_:819358 a rdf:Statement ;
up:attribution _:819333 ;
rdf:subject ?case7 ;
rdf:predicate up:recommendedName ;
rdf:object ?name8 .
_:819359 a rdf:Statement ;
up:attribution _:819334 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name10 .
_:819360 a rdf:Statement ;
up:attribution _:819335 ;
rdf:subject ?case7 ;
rdf:predicate up:alternativeName ;
rdf:object ?name11 .
_:819361 a rdf:Statement ;
up:attribution _:819336 ;
rdf:subject ?case14 ;
rdf:predicate up:recommendedName ;
rdf:object ?name15 .
_:819362 a rdf:Statement ;
up:attribution _:819337 ;
rdf:subject ?case14 ;
rdf:predicate up:alternativeName ;
rdf:object ?name16 .
_:819363 a rdf:Statement ;
up:attribution _:819338 ;
rdf:subject ?case14 ;
rdf:predicate up:alternativeName ;
rdf:object ?name17 .
_:819364 a rdf:Statement ;
up:source unirule:MF_03111 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:819365 a rdf:Statement ;
up:attribution _:819339 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:819366 a rdf:Statement ;
up:source unirule:MF_03111 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:819367 a rdf:Statement ;
up:attribution _:819340 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:819368 a rdf:Statement ;
up:source unirule:MF_03111 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:819369 a rdf:Statement ;
up:attribution _:819341 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:819370 a rdf:Statement ;
up:source unirule:MF_03111 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:819371 a rdf:Statement ;
up:attribution _:819342 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03111
#Rule MF_03111 Created by:? on:2012-10-26 Modified by:Catherine Rivoire on:2025-04-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03111 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03111a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_03111a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_03111a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03111a4')) AS ?annotation4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch53 faldo:location ?templateMotifSequenceMatchRegionQ9Y3A054 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3A056 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3A0MF_0311149 .
?templateMotifSequenceMatchRegionQ9Y3A054 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3A055 .
?templateMotifSequenceMatchBeginQ9Y3A055 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3A050 ;
faldo:reference isoform:Q9Y3A0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3A056 edam:has_input signature:MF_03111 ;
rdf:type edam:operation_0300 .
?targetMotifMatch57 faldo:location ?targetMotifMatchRegionMatch58 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0311160 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3A0MF_0311151 .
?targetMotifMatchRegionMatch58 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0311159 .
?targetMotifMatchRegionMatchBeginMF_0311159 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0311152 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0311160 edam:has_input signature:MF_03111 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3A0MF_0311149, 1, (STRLEN(?templateMotifCigarQ9Y3A0MF_0311149) - STRLEN(REPLACE(?templateMotifCigarQ9Y3A0MF_0311149, CONCAT('^(?:-*[^-]){', STR(((163 - ?templateMotifSequenceMatchBeginPositionQ9Y3A050) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3A0MF_0311151, 1, (STRLEN(?targetMotifMatchCigarQ9Y3A0MF_0311151) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3A0MF_0311151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3A0MF_0311151, 1, (STRLEN(?targetMotifMatchCigarQ9Y3A0MF_0311151) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3A0MF_0311151, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) .
BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0311152) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03111a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch68 faldo:location ?templateMotifSequenceMatchRegionQ9Y3A069 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3A071 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3A0MF_0311164 .
?templateMotifSequenceMatchRegionQ9Y3A069 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3A070 .
?templateMotifSequenceMatchBeginQ9Y3A070 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3A065 ;
faldo:reference isoform:Q9Y3A0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3A071 edam:has_input signature:MF_03111 ;
rdf:type edam:operation_0300 .
?targetMotifMatch72 faldo:location ?targetMotifMatchRegionMatch73 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0311175 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3A0MF_0311166 .
?targetMotifMatchRegionMatch73 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0311174 .
?targetMotifMatchRegionMatchBeginMF_0311174 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0311167 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0311175 edam:has_input signature:MF_03111 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3A0MF_0311164, 1, (STRLEN(?templateMotifCigarQ9Y3A0MF_0311164) - STRLEN(REPLACE(?templateMotifCigarQ9Y3A0MF_0311164, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionQ9Y3A065) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3A0MF_0311166, 1, (STRLEN(?targetMotifMatchCigarQ9Y3A0MF_0311166) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3A0MF_0311166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3A0MF_0311166, 1, (STRLEN(?targetMotifMatchCigarQ9Y3A0MF_0311166) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3A0MF_0311166, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0311167) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03111a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionQ9Y3A084 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3A086 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3A0MF_0311179 .
?templateMotifSequenceMatchRegionQ9Y3A084 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3A085 .
?templateMotifSequenceMatchBeginQ9Y3A085 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3A080 ;
faldo:reference isoform:Q9Y3A0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3A086 edam:has_input signature:MF_03111 ;
rdf:type edam:operation_0300 .
?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0311190 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3A0MF_0311181 .
?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0311189 .
?targetMotifMatchRegionMatchBeginMF_0311189 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0311182 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0311190 edam:has_input signature:MF_03111 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3A0MF_0311179, 1, (STRLEN(?templateMotifCigarQ9Y3A0MF_0311179) - STRLEN(REPLACE(?templateMotifCigarQ9Y3A0MF_0311179, CONCAT('^(?:-*[^-]){', STR(((167 - ?templateMotifSequenceMatchBeginPositionQ9Y3A080) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3A0MF_0311181, 1, (STRLEN(?targetMotifMatchCigarQ9Y3A0MF_0311181) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3A0MF_0311181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3A0MF_0311181, 1, (STRLEN(?targetMotifMatchCigarQ9Y3A0MF_0311181) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3A0MF_0311181, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0311182) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_03111a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionQ9Y3A099 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9Y3A0101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9Y3A0MF_0311194 .
?templateMotifSequenceMatchRegionQ9Y3A099 faldo:begin ?templateMotifSequenceMatchBeginQ9Y3A0100 .
?templateMotifSequenceMatchBeginQ9Y3A0100 faldo:position ?templateMotifSequenceMatchBeginPositionQ9Y3A095 ;
faldo:reference isoform:Q9Y3A0-1 .
?templateMotifSequenceProfileAlignmentOperationQ9Y3A0101 edam:has_input signature:MF_03111 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03111105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9Y3A0MF_0311196 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03111104 .
?targetMotifMatchRegionMatchBeginMF_03111104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0311197 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03111105 edam:has_input signature:MF_03111 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9Y3A0MF_0311194, 1, (STRLEN(?templateMotifCigarQ9Y3A0MF_0311194) - STRLEN(REPLACE(?templateMotifCigarQ9Y3A0MF_0311194, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionQ9Y3A095) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9Y3A0MF_0311196, 1, (STRLEN(?targetMotifMatchCigarQ9Y3A0MF_0311196) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3A0MF_0311196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9Y3A0MF_0311196, 1, (STRLEN(?targetMotifMatchCigarQ9Y3A0MF_0311196) - STRLEN(REPLACE(?targetMotifMatchCigarQ9Y3A0MF_0311196, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0311197) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_03111a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4930 .
BIND(?this AS ?case5) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:6237 .
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon109 {taxon:4751 taxon:6237}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon109 .
BIND(?this AS ?case7) .
BIND(URI(CONCAT(STR(?this), '#MF_03111a8')) AS ?name8) .
OPTIONAL {
?this up:encodedBy ?gene113 .
?gene113 up:locusName ?geneLocus111 .
}
OPTIONAL {
?this up:encodedBy ?gene113 .
?gene113 up:orfName ?geneOrf112 .
}
BIND(IF(BOUND(?geneLocus111), ?geneLocus111, ?geneOrf112) AS ?part110) .
BIND(CONCAT('Ubiquinone biosynthesis protein ', ?part110, ', mitochondrial') AS ?nameValue9) .
BIND(URI(CONCAT(STR(?this), '#MF_03111a10')) AS ?name10) .
BIND(URI(CONCAT(STR(?this), '#MF_03111a11')) AS ?name11) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon114 {taxon:40674 taxon:4895}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon114 .
BIND(?this AS ?case12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon115 {taxon:7742 taxon:4751}
?thisOrganism rdfs:subClassOf+ ?supertaxon115 .
})) .
BIND(?this AS ?case13) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon116 {taxon:4751 taxon:6237}
?thisOrganism rdfs:subClassOf+ ?supertaxon116 .
})) .
BIND(?this AS ?case14) .
BIND(URI(CONCAT(STR(?this), '#MF_03111a15')) AS ?name15) .
BIND(URI(CONCAT(STR(?this), '#MF_03111a16')) AS ?name16) .
BIND(URI(CONCAT(STR(?this), '#MF_03111a17')) AS ?name17) .
}
OPTIONAL {
?this a up:Protein .
VALUES ?supertaxon117 {taxon:7742 taxon:4751 taxon:5782}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon117 .
BIND(?this AS ?case18) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:4930 .
})) .
} UNION {
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
}
BIND(?this AS ?case19) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon118 {taxon:4930 taxon:40674 taxon:4895}
?thisOrganism rdfs:subClassOf+ ?supertaxon118 .
})) .
BIND(?this AS ?case20) .
}
}
"xsd:string |
