| http://purl.uniprot.org/unirules/MF_03142#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:839405 up:source unirule:MF_03142 .
_:839406 up:source unirule:MF_03142 .
_:839407 up:source unirule:MF_03142 .
_:839408 up:source unirule:MF_03142 .
_:839409 up:source unirule:MF_03142 .
_:839410 up:source unirule:MF_03142 .
_:839411 up:source unirule:MF_03142 .
_:839412 up:source unirule:MF_03142 .
_:839413 up:source unirule:MF_03142 .
_:839414 up:source unirule:MF_03142 .
_:839415 up:source unirule:MF_03142 .
_:839416 up:source unirule:MF_03142 .
_:839417 up:source unirule:MF_03142 .
_:839418 up:source unirule:MF_03142 .
_:839419 up:source unirule:MF_03142 .
_:839420 up:source unirule:MF_03142 .
_:839421 up:source unirule:MF_03142 .
_:839422 up:source unirule:MF_03142 .
_:839423 up:source unirule:MF_03142 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0046294 ,
GO:0051907 ,
keyword:456 ,
keyword:479 ,
keyword:862 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.4.1.22' ;
up:fullName 'Putative glutathione-dependent formaldehyde-activating enzyme' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'S-(hydroxymethyl)glutathione synthase' ;
rdf:type up:Structured_Name .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'One-carbon metabolism; formaldehyde degradation; formate from formaldehyde (glutathione route): step 1/3.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Gfa family.' .
?case7 up:classifiedWith GO:0008270 .
?pfs8 up:annotation ?annotation9 ,
?annotation15 ,
?annotation21 ,
?annotation27 ,
?annotation33 ,
?annotation39 ,
?annotation45 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:29105 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:29105 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:29105 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:29105 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
up:ligand ?ligand36 ;
rdf:type up:Binding_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand36 rdfs:subClassOf chebi:29105 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:29105 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:29105 .
_:839424 a rdf:Statement ;
up:attribution _:839405 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:839425 a rdf:Statement ;
up:attribution _:839406 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:839426 a rdf:Statement ;
up:attribution _:839407 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:839427 a rdf:Statement ;
up:attribution _:839408 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:839428 a rdf:Statement ;
up:attribution _:839409 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:839429 a rdf:Statement ;
up:attribution _:839410 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:839430 a rdf:Statement ;
up:attribution _:839411 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:839431 a rdf:Statement ;
up:attribution _:839412 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:839432 a rdf:Statement ;
up:attribution _:839413 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:839433 a rdf:Statement ;
up:attribution _:839414 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0051907 .
_:839434 a rdf:Statement ;
up:attribution _:839415 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046294 .
_:839435 a rdf:Statement ;
up:attribution _:839416 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:839436 a rdf:Statement ;
up:source unirule:MF_03142 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:839437 a rdf:Statement ;
up:attribution _:839417 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:839438 a rdf:Statement ;
up:source unirule:MF_03142 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:839439 a rdf:Statement ;
up:attribution _:839418 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:839440 a rdf:Statement ;
up:source unirule:MF_03142 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:839441 a rdf:Statement ;
up:attribution _:839419 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:839442 a rdf:Statement ;
up:source unirule:MF_03142 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:839443 a rdf:Statement ;
up:attribution _:839420 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:839444 a rdf:Statement ;
up:source unirule:MF_03142 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:839445 a rdf:Statement ;
up:attribution _:839421 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:839446 a rdf:Statement ;
up:source unirule:MF_03142 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:839447 a rdf:Statement ;
up:attribution _:839422 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:839448 a rdf:Statement ;
up:source unirule:MF_03142 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:839449 a rdf:Statement ;
up:attribution _:839423 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03142
#Rule MF_03142 Created by:? on:2012-08-22 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00723 .
?thisOrganism rdfs:subClassOf+ taxon:147538 .
BIND(URI(CONCAT(STR(?this), '#MF_03142a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03142a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03142a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03142a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03142a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03142a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch55 faldo:location ?templateMotifSequenceMatchRegionC8VDQ356 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationC8VDQ358 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarC8VDQ3MF_0072351 .
?templateMotifSequenceMatchRegionC8VDQ356 faldo:begin ?templateMotifSequenceMatchBeginC8VDQ357 .
?templateMotifSequenceMatchBeginC8VDQ357 faldo:position ?templateMotifSequenceMatchBeginPositionC8VDQ352 ;
faldo:reference isoform:C8VDQ3-1 .
?templateMotifSequenceProfileAlignmentOperationC8VDQ358 edam:has_input signature:MF_00723 ;
rdf:type edam:operation_0300 .
?targetMotifMatch59 faldo:location ?targetMotifMatchRegionMatch60 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0072362 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarC8VDQ3MF_0072353 .
?targetMotifMatchRegionMatch60 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0072361 .
?targetMotifMatchRegionMatchBeginMF_0072361 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0072354 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0072362 edam:has_input signature:MF_00723 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC8VDQ3MF_0072351, 1, (STRLEN(?templateMotifCigarC8VDQ3MF_0072351) - STRLEN(REPLACE(?templateMotifCigarC8VDQ3MF_0072351, CONCAT('^(?:-*[^-]){', STR(((29 - ?templateMotifSequenceMatchBeginPositionC8VDQ352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0072354) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC8VDQ3MF_0072351, 1, (STRLEN(?templateMotifCigarC8VDQ3MF_0072351) - STRLEN(REPLACE(?templateMotifCigarC8VDQ3MF_0072351, CONCAT('^(?:-*[^-]){', STR(((31 - ?templateMotifSequenceMatchBeginPositionC8VDQ352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) .
BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0072354) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t68) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC8VDQ3MF_0072351, 1, (STRLEN(?templateMotifCigarC8VDQ3MF_0072351) - STRLEN(REPLACE(?templateMotifCigarC8VDQ3MF_0072351, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionC8VDQ352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0072354) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC8VDQ3MF_0072351, 1, (STRLEN(?templateMotifCigarC8VDQ3MF_0072351) - STRLEN(REPLACE(?templateMotifCigarC8VDQ3MF_0072351, CONCAT('^(?:-*[^-]){', STR(((52 - ?templateMotifSequenceMatchBeginPositionC8VDQ352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0072354) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC8VDQ3MF_0072351, 1, (STRLEN(?templateMotifCigarC8VDQ3MF_0072351) - STRLEN(REPLACE(?templateMotifCigarC8VDQ3MF_0072351, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionC8VDQ352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0072354) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC8VDQ3MF_0072351, 1, (STRLEN(?templateMotifCigarC8VDQ3MF_0072351) - STRLEN(REPLACE(?templateMotifCigarC8VDQ3MF_0072351, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionC8VDQ352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0072354) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarC8VDQ3MF_0072351, 1, (STRLEN(?templateMotifCigarC8VDQ3MF_0072351) - STRLEN(REPLACE(?templateMotifCigarC8VDQ3MF_0072351, CONCAT('^(?:-*[^-]){', STR(((100 - ?templateMotifSequenceMatchBeginPositionC8VDQ352) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarC8VDQ3MF_0072353, 1, (STRLEN(?targetMotifMatchCigarC8VDQ3MF_0072353) - STRLEN(REPLACE(?targetMotifMatchCigarC8VDQ3MF_0072353, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) .
BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0072354) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1) = 'C')) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag84) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag84, ?UNBOUND_VARIABLE) AS ?case7) .
}
"xsd:string |
