| http://purl.uniprot.org/unirules/MF_03162#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:852888 up:source unirule:MF_03162 .
_:852889 up:source unirule:MF_03162 .
_:852890 up:source unirule:MF_03162 .
_:852891 up:source unirule:MF_03162 .
_:852892 up:source unirule:MF_03162 .
_:852893 up:source unirule:MF_03162 .
_:852894 up:source unirule:MF_03162 .
_:852895 up:source unirule:MF_03162 .
_:852896 up:source unirule:MF_03162 .
_:852897 up:source unirule:MF_03162 .
_:852898 up:source unirule:MF_03162 .
_:852899 up:source unirule:MF_03162 .
_:852900 up:source unirule:MF_03162 .
_:852901 up:source unirule:MF_03162 .
_:852902 up:source unirule:MF_03162 .
_:852903 up:source unirule:MF_03162 .
_:852904 up:source unirule:MF_03162 .
_:852905 up:source unirule:MF_03162 .
_:852906 up:source unirule:MF_03162 .
_:852907 up:source unirule:MF_03162 .
_:852908 up:source unirule:MF_03162 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation7 ;
up:classifiedWith GO:0002128 ,
GO:0002181 ,
GO:0005737 ,
GO:0008175 ,
keyword:489 ,
keyword:808 ,
keyword:819 ,
keyword:949 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.205' ;
up:fullName "Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase" ;
rdf:type up:Structured_Name .
?name1 up:fullName "2'-O-ribose RNA methyltransferase TRM7 homolog" ;
rdf:type up:Structured_Name .
?annotation2 a up:Function_Annotation ;
rdfs:comment "Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs." .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Subcellular_Location_Annotation .
?annotation5li6 up:cellularComponent .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. TRM7 subfamily.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 ,
?annotation23 ,
?annotation29 ,
?annotation35 ,
?annotation41 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:59789 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:59789 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:59789 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:59789 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:59789 .
_:852909 a rdf:Statement ;
up:attribution _:852888 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:852910 a rdf:Statement ;
up:attribution _:852889 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:852911 a rdf:Statement ;
up:attribution _:852890 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:852912 a rdf:Statement ;
up:attribution _:852891 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:852913 a rdf:Statement ;
up:attribution _:852892 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:852914 a rdf:Statement ;
up:attribution _:852893 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:852915 a rdf:Statement ;
up:attribution _:852894 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:852916 a rdf:Statement ;
up:attribution _:852895 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:852917 a rdf:Statement ;
up:attribution _:852896 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:852918 a rdf:Statement ;
up:attribution _:852897 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:852919 a rdf:Statement ;
up:attribution _:852898 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:852920 a rdf:Statement ;
up:attribution _:852899 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:852921 a rdf:Statement ;
up:attribution _:852900 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008175 .
_:852922 a rdf:Statement ;
up:attribution _:852901 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002181 .
_:852923 a rdf:Statement ;
up:attribution _:852902 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0002128 .
_:852924 a rdf:Statement ;
up:source unirule:MF_03162 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:852925 a rdf:Statement ;
up:attribution _:852903 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:852926 a rdf:Statement ;
up:source unirule:MF_03162 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:852927 a rdf:Statement ;
up:attribution _:852904 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:852928 a rdf:Statement ;
up:source unirule:MF_03162 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:852929 a rdf:Statement ;
up:attribution _:852905 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:852930 a rdf:Statement ;
up:source unirule:MF_03162 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:852931 a rdf:Statement ;
up:attribution _:852906 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:852932 a rdf:Statement ;
up:source unirule:MF_03162 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:852933 a rdf:Statement ;
up:attribution _:852907 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:852934 a rdf:Statement ;
up:source unirule:MF_03162 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:852935 a rdf:Statement ;
up:attribution _:852908 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03162
#Rule MF_03162 Created by:? on:2013-01-08 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03162 .
?thisOrganism rdfs:subClassOf+ taxon:2759 .
BIND(URI(CONCAT(STR(?this), '#MF_03162a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03162a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03162a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03162a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03162a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03162a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch51 faldo:location ?templateMotifSequenceMatchRegionP3823852 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3823854 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP38238MF_0316247 .
?templateMotifSequenceMatchRegionP3823852 faldo:begin ?templateMotifSequenceMatchBeginP3823853 .
?templateMotifSequenceMatchBeginP3823853 faldo:position ?templateMotifSequenceMatchBeginPositionP3823848 ;
faldo:reference isoform:P38238-1 .
?templateMotifSequenceProfileAlignmentOperationP3823854 edam:has_input signature:MF_03162 ;
rdf:type edam:operation_0300 .
?targetMotifMatch55 faldo:location ?targetMotifMatchRegionMatch56 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0316258 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP38238MF_0316249 .
?targetMotifMatchRegionMatch56 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0316257 .
?targetMotifMatchRegionMatchBeginMF_0316257 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0316250 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0316258 edam:has_input signature:MF_03162 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38238MF_0316247, 1, (STRLEN(?templateMotifCigarP38238MF_0316247) - STRLEN(REPLACE(?templateMotifCigarP38238MF_0316247, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionP3823848) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38238MF_0316249, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316249) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38238MF_0316249, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316249) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316249, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) .
BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0316250) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t61) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03162a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionP3823867 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3823869 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP38238MF_0316262 .
?templateMotifSequenceMatchRegionP3823867 faldo:begin ?templateMotifSequenceMatchBeginP3823868 .
?templateMotifSequenceMatchBeginP3823868 faldo:position ?templateMotifSequenceMatchBeginPositionP3823863 ;
faldo:reference isoform:P38238-1 .
?templateMotifSequenceProfileAlignmentOperationP3823869 edam:has_input signature:MF_03162 ;
rdf:type edam:operation_0300 .
?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0316273 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP38238MF_0316264 .
?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0316272 .
?targetMotifMatchRegionMatchBeginMF_0316272 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0316265 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0316273 edam:has_input signature:MF_03162 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38238MF_0316262, 1, (STRLEN(?templateMotifCigarP38238MF_0316262) - STRLEN(REPLACE(?templateMotifCigarP38238MF_0316262, CONCAT('^(?:-*[^-]){', STR(((55 - ?templateMotifSequenceMatchBeginPositionP3823863) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0316265) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs2t76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'G')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38238MF_0316262, 1, (STRLEN(?templateMotifCigarP38238MF_0316262) - STRLEN(REPLACE(?templateMotifCigarP38238MF_0316262, CONCAT('^(?:-*[^-]){', STR(((57 - ?templateMotifSequenceMatchBeginPositionP3823863) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0316265) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs2t79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER (REGEX('[WF]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38238MF_0316262, 1, (STRLEN(?templateMotifCigarP38238MF_0316262) - STRLEN(REPLACE(?templateMotifCigarP38238MF_0316262, CONCAT('^(?:-*[^-]){', STR(((83 - ?templateMotifSequenceMatchBeginPositionP3823863) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0316265) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs2t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38238MF_0316262, 1, (STRLEN(?templateMotifCigarP38238MF_0316262) - STRLEN(REPLACE(?templateMotifCigarP38238MF_0316262, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionP3823863) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) .
BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0316265) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs2t85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER (REGEX('[DN]', SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP38238MF_0316262, 1, (STRLEN(?templateMotifCigarP38238MF_0316262) - STRLEN(REPLACE(?templateMotifCigarP38238MF_0316262, CONCAT('^(?:-*[^-]){', STR(((124 - ?templateMotifSequenceMatchBeginPositionP3823863) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP38238MF_0316264, 1, (STRLEN(?targetMotifMatchCigarP38238MF_0316264) - STRLEN(REPLACE(?targetMotifMatchCigarP38238MF_0316264, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0316265) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs2t88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'D')) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:4892 .
BIND(?this AS ?case9) .
}
}
"xsd:string |
