| http://purl.uniprot.org/unirules/MF_03165#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:854498 up:source unirule:MF_03165 .
_:854499 up:source unirule:MF_03165 .
_:854500 up:source unirule:MF_03165 .
_:854501 up:source unirule:MF_03165 .
_:854502 up:source unirule:MF_03165 .
_:854503 up:source unirule:MF_03165 .
_:854504 up:source unirule:MF_03165 .
_:854505 up:source unirule:MF_03165 .
_:854506 up:source unirule:MF_03165 .
_:854507 up:source unirule:MF_03165 .
_:854508 up:source unirule:MF_03165 .
_:854509 up:source unirule:MF_03165 .
_:854510 up:source unirule:MF_03165 .
_:854511 up:source unirule:MF_03165 .
_:854512 up:source unirule:MF_03165 .
_:854513 up:source unirule:MF_03165 .
_:854514 up:source unirule:MF_03165 .
_:854515 up:source unirule:MF_03165 .
_:854516 up:source unirule:MF_03165 .
_:854517 up:source unirule:MF_03165 .
_:854518 up:source unirule:MF_03165 .
_:854519 up:source unirule:MF_03165 .
_:854520 up:source unirule:MF_03165 .
_:854521 up:source unirule:MF_03165 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0003677 ,
GO:0003918 ,
GO:0005524 ,
GO:0005634 ,
GO:0006265 ,
GO:0009330 ,
keyword:238 ,
keyword:413 ,
keyword:539 ,
keyword:547 ,
keyword:67 ,
keyword:799 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.6.2.2' ;
up:fullName 'DNA topoisomerase 6 subunit B' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'TOP6B' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:enzymeClass .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer. Heterotetramer of two TOP6A and two TOP6B subunits.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the TOP6B family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:30616 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:30616 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:30616 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:30616 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:30616 .
_:854522 a rdf:Statement ;
up:attribution _:854498 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:854523 a rdf:Statement ;
up:attribution _:854499 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:854524 a rdf:Statement ;
up:attribution _:854500 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:854525 a rdf:Statement ;
up:attribution _:854501 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:854526 a rdf:Statement ;
up:attribution _:854502 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:854527 a rdf:Statement ;
up:attribution _:854503 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:854528 a rdf:Statement ;
up:attribution _:854504 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:854529 a rdf:Statement ;
up:attribution _:854505 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:854530 a rdf:Statement ;
up:attribution _:854506 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:238 .
_:854531 a rdf:Statement ;
up:attribution _:854507 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:854532 a rdf:Statement ;
up:attribution _:854508 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:854533 a rdf:Statement ;
up:attribution _:854509 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:539 .
_:854534 a rdf:Statement ;
up:attribution _:854510 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:799 .
_:854535 a rdf:Statement ;
up:attribution _:854511 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009330 .
_:854536 a rdf:Statement ;
up:attribution _:854512 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005634 .
_:854537 a rdf:Statement ;
up:attribution _:854513 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:854538 a rdf:Statement ;
up:attribution _:854514 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003677 .
_:854539 a rdf:Statement ;
up:attribution _:854515 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003918 .
_:854540 a rdf:Statement ;
up:attribution _:854516 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006265 .
_:854541 a rdf:Statement ;
up:source unirule:MF_03165 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:854542 a rdf:Statement ;
up:attribution _:854517 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:854543 a rdf:Statement ;
up:source unirule:MF_03165 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:854544 a rdf:Statement ;
up:attribution _:854518 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:854545 a rdf:Statement ;
up:source unirule:MF_03165 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:854546 a rdf:Statement ;
up:attribution _:854519 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:854547 a rdf:Statement ;
up:source unirule:MF_03165 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:854548 a rdf:Statement ;
up:attribution _:854520 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:854549 a rdf:Statement ;
up:source unirule:MF_03165 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:854550 a rdf:Statement ;
up:attribution _:854521 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03165
#Rule MF_03165 Created by:? on:2013-02-13 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00322 .
?thisOrganism rdfs:subClassOf+ taxon:33090 .
BIND(URI(CONCAT(STR(?this), '#MF_03165a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03165a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03165a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03165a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03165a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_03165a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch48 faldo:location ?templateMotifSequenceMatchRegionO0520749 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO0520751 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO05207MF_0032244 .
?templateMotifSequenceMatchRegionO0520749 faldo:begin ?templateMotifSequenceMatchBeginO0520750 .
?templateMotifSequenceMatchBeginO0520750 faldo:position ?templateMotifSequenceMatchBeginPositionO0520745 ;
faldo:reference isoform:O05207-1 .
?templateMotifSequenceProfileAlignmentOperationO0520751 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
?targetMotifMatch52 faldo:location ?targetMotifMatchRegionMatch53 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0032255 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO05207MF_0032246 .
?targetMotifMatchRegionMatch53 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0032254 .
?targetMotifMatchRegionMatchBeginMF_0032254 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0032247 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0032255 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO05207MF_0032244, 1, (STRLEN(?templateMotifCigarO05207MF_0032244) - STRLEN(REPLACE(?templateMotifCigarO05207MF_0032244, CONCAT('^(?:-*[^-]){', STR(((97 - ?templateMotifSequenceMatchBeginPositionO0520745) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO05207MF_0032246, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032246) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO05207MF_0032246, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032246) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0032247) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO05207MF_0032244, 1, (STRLEN(?templateMotifCigarO05207MF_0032244) - STRLEN(REPLACE(?templateMotifCigarO05207MF_0032244, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionO0520745) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO05207MF_0032246, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032246) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO05207MF_0032246, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032246) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032246, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) .
BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0032247) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER (REGEX('[ST][KR]', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03165a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch65 faldo:location ?templateMotifSequenceMatchRegionO0520766 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO0520768 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO05207MF_0032261 .
?templateMotifSequenceMatchRegionO0520766 faldo:begin ?templateMotifSequenceMatchBeginO0520767 .
?templateMotifSequenceMatchBeginO0520767 faldo:position ?templateMotifSequenceMatchBeginPositionO0520762 ;
faldo:reference isoform:O05207-1 .
?templateMotifSequenceProfileAlignmentOperationO0520768 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
?targetMotifMatch69 faldo:location ?targetMotifMatchRegionMatch70 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0032272 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO05207MF_0032263 .
?targetMotifMatchRegionMatch70 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0032271 .
?targetMotifMatchRegionMatchBeginMF_0032271 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0032264 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0032272 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO05207MF_0032261, 1, (STRLEN(?templateMotifCigarO05207MF_0032261) - STRLEN(REPLACE(?templateMotifCigarO05207MF_0032261, CONCAT('^(?:-*[^-]){', STR(((106 - ?templateMotifSequenceMatchBeginPositionO0520762) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO05207MF_0032263, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032263) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO05207MF_0032263, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032263) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0032264) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO05207MF_0032261, 1, (STRLEN(?templateMotifCigarO05207MF_0032261) - STRLEN(REPLACE(?templateMotifCigarO05207MF_0032261, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionO0520762) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO05207MF_0032263, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032263) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO05207MF_0032263, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032263) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0032264) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER (REGEX('G[ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX]G[LIV]G[ARNDCQEGHILKMFPSTWYVBZJUOX][KSA]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03165a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch82 faldo:location ?templateMotifSequenceMatchRegionO0520783 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO0520785 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO05207MF_0032278 .
?templateMotifSequenceMatchRegionO0520783 faldo:begin ?templateMotifSequenceMatchBeginO0520784 .
?templateMotifSequenceMatchBeginO0520784 faldo:position ?templateMotifSequenceMatchBeginPositionO0520779 ;
faldo:reference isoform:O05207-1 .
?templateMotifSequenceProfileAlignmentOperationO0520785 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
?targetMotifMatch86 faldo:location ?targetMotifMatchRegionMatch87 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0032289 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO05207MF_0032280 .
?targetMotifMatchRegionMatch87 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0032288 .
?targetMotifMatchRegionMatchBeginMF_0032288 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0032281 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0032289 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO05207MF_0032278, 1, (STRLEN(?templateMotifCigarO05207MF_0032278) - STRLEN(REPLACE(?templateMotifCigarO05207MF_0032278, CONCAT('^(?:-*[^-]){', STR(((42 - ?templateMotifSequenceMatchBeginPositionO0520779) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO05207MF_0032280, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032280) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO05207MF_0032280, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032280) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032280, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0032281) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_03165a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionO0520798 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO05207100 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO05207MF_0032293 .
?templateMotifSequenceMatchRegionO0520798 faldo:begin ?templateMotifSequenceMatchBeginO0520799 .
?templateMotifSequenceMatchBeginO0520799 faldo:position ?templateMotifSequenceMatchBeginPositionO0520794 ;
faldo:reference isoform:O05207-1 .
?templateMotifSequenceProfileAlignmentOperationO05207100 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00322104 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO05207MF_0032295 .
?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00322103 .
?targetMotifMatchRegionMatchBeginMF_00322103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0032296 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00322104 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO05207MF_0032293, 1, (STRLEN(?templateMotifCigarO05207MF_0032293) - STRLEN(REPLACE(?templateMotifCigarO05207MF_0032293, CONCAT('^(?:-*[^-]){', STR(((76 - ?templateMotifSequenceMatchBeginPositionO0520794) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO05207MF_0032295, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032295) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO05207MF_0032295, 1, (STRLEN(?targetMotifMatchCigarO05207MF_0032295) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_0032295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0032296) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03165a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionO05207113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO05207115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO05207MF_00322108 .
?templateMotifSequenceMatchRegionO05207113 faldo:begin ?templateMotifSequenceMatchBeginO05207114 .
?templateMotifSequenceMatchBeginO05207114 faldo:position ?templateMotifSequenceMatchBeginPositionO05207109 ;
faldo:reference isoform:O05207-1 .
?templateMotifSequenceProfileAlignmentOperationO05207115 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00322119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO05207MF_00322110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00322118 .
?targetMotifMatchRegionMatchBeginMF_00322118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00322111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00322119 edam:has_input signature:MF_00322 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO05207MF_00322108, 1, (STRLEN(?templateMotifCigarO05207MF_00322108) - STRLEN(REPLACE(?templateMotifCigarO05207MF_00322108, CONCAT('^(?:-*[^-]){', STR(((427 - ?templateMotifSequenceMatchBeginPositionO05207109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO05207MF_00322110, 1, (STRLEN(?targetMotifMatchCigarO05207MF_00322110) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_00322110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO05207MF_00322110, 1, (STRLEN(?targetMotifMatchCigarO05207MF_00322110) - STRLEN(REPLACE(?targetMotifMatchCigarO05207MF_00322110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_00322111) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_03165a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
}
"xsd:string |
