| http://purl.uniprot.org/unirules/MF_03197#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:875285 up:source unirule:MF_03197 .
_:875286 up:source unirule:MF_03197 .
_:875287 up:source unirule:MF_03197 .
_:875288 up:source unirule:MF_03197 .
_:875289 up:source unirule:MF_03197 .
_:875290 up:source unirule:MF_03197 .
_:875291 up:source unirule:MF_03197 .
_:875292 up:source unirule:MF_03197 .
_:875293 up:source unirule:MF_03197 .
_:875294 up:source unirule:MF_03197 .
_:875295 up:source unirule:MF_03197 .
_:875296 up:source unirule:MF_03197 .
_:875297 up:source unirule:MF_03197 .
_:875298 up:source unirule:MF_03197 .
_:875299 up:source unirule:MF_03197 .
_:875300 up:source unirule:MF_03197 .
_:875301 up:source unirule:MF_03197 .
_:875302 up:source unirule:MF_03197 .
_:875303 up:source unirule:MF_03197 .
_:875304 up:source unirule:MF_03197 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0004659 ,
GO:0005739 ,
keyword:285 ,
keyword:288 ,
keyword:496 ,
keyword:637 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.5.1.129' ;
up:fullName 'Flavin prenyltransferase PAD1, mitochondrial' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'PAD1' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for the ferulic acid decarboxylase FDC1. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Oligomer.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the UbiX/PAD1 family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:58210 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:58210 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:58210 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:58210 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:88052 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
up:ligand ?ligand48 ;
rdf:type up:Binding_Site_Annotation .
?pfsb46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?ligand48 rdfs:subClassOf chebi:88052 .
_:875305 a rdf:Statement ;
up:attribution _:875285 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:875306 a rdf:Statement ;
up:attribution _:875286 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:875307 a rdf:Statement ;
up:attribution _:875287 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:875308 a rdf:Statement ;
up:attribution _:875288 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:875309 a rdf:Statement ;
up:attribution _:875289 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:875310 a rdf:Statement ;
up:attribution _:875290 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:875311 a rdf:Statement ;
up:attribution _:875291 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:875312 a rdf:Statement ;
up:attribution _:875292 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:875313 a rdf:Statement ;
up:attribution _:875293 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:288 .
_:875314 a rdf:Statement ;
up:attribution _:875294 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:496 .
_:875315 a rdf:Statement ;
up:attribution _:875295 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:637 .
_:875316 a rdf:Statement ;
up:attribution _:875296 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:875317 a rdf:Statement ;
up:attribution _:875297 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005739 .
_:875318 a rdf:Statement ;
up:attribution _:875298 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004659 .
_:875319 a rdf:Statement ;
up:source unirule:MF_03197 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:875320 a rdf:Statement ;
up:attribution _:875299 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:875321 a rdf:Statement ;
up:source unirule:MF_03197 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:875322 a rdf:Statement ;
up:attribution _:875300 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:875323 a rdf:Statement ;
up:source unirule:MF_03197 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:875324 a rdf:Statement ;
up:attribution _:875301 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:875325 a rdf:Statement ;
up:source unirule:MF_03197 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:875326 a rdf:Statement ;
up:attribution _:875302 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:875327 a rdf:Statement ;
up:source unirule:MF_03197 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:875328 a rdf:Statement ;
up:attribution _:875303 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:875329 a rdf:Statement ;
up:source unirule:MF_03197 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:875330 a rdf:Statement ;
up:attribution _:875304 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03197
#Rule MF_03197 Created by:? on:2015-09-01 Modified by:Edouard de Castro on:2024-09-19
{
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01984 .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_01986 .
})) .
} UNION {
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_01984 .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:2 .
})) .
}
BIND(URI(CONCAT(STR(?this), '#MF_03197a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03197a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_03197a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03197a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_03197a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_03197a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch55 faldo:location ?templateMotifSequenceMatchRegionP3375156 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3375158 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33751MF_0198451 .
?templateMotifSequenceMatchRegionP3375156 faldo:begin ?templateMotifSequenceMatchBeginP3375157 .
?templateMotifSequenceMatchBeginP3375157 faldo:position ?templateMotifSequenceMatchBeginPositionP3375152 ;
faldo:reference isoform:P33751-1 .
?templateMotifSequenceProfileAlignmentOperationP3375158 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
?targetMotifMatch59 faldo:location ?targetMotifMatchRegionMatch60 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0198462 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33751MF_0198453 .
?targetMotifMatchRegionMatch60 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0198461 .
?targetMotifMatchRegionMatchBeginMF_0198461 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0198454 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0198462 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33751MF_0198451, 1, (STRLEN(?templateMotifCigarP33751MF_0198451) - STRLEN(REPLACE(?templateMotifCigarP33751MF_0198451, CONCAT('^(?:-*[^-]){', STR(((63 - ?templateMotifSequenceMatchBeginPositionP3375152) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33751MF_0198453, 1, (STRLEN(?targetMotifMatchCigarP33751MF_0198453) - STRLEN(REPLACE(?targetMotifMatchCigarP33751MF_0198453, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33751MF_0198453, 1, (STRLEN(?targetMotifMatchCigarP33751MF_0198453) - STRLEN(REPLACE(?targetMotifMatchCigarP33751MF_0198453, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0198454) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33751MF_0198451, 1, (STRLEN(?templateMotifCigarP33751MF_0198451) - STRLEN(REPLACE(?templateMotifCigarP33751MF_0198451, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP3375152) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33751MF_0198453, 1, (STRLEN(?targetMotifMatchCigarP33751MF_0198453) - STRLEN(REPLACE(?targetMotifMatchCigarP33751MF_0198453, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33751MF_0198453, 1, (STRLEN(?targetMotifMatchCigarP33751MF_0198453) - STRLEN(REPLACE(?targetMotifMatchCigarP33751MF_0198453, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0198454) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER (REGEX('G[AGS][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03197a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP3375173 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3375175 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33751MF_0198468 .
?templateMotifSequenceMatchRegionP3375173 faldo:begin ?templateMotifSequenceMatchBeginP3375174 .
?templateMotifSequenceMatchBeginP3375174 faldo:position ?templateMotifSequenceMatchBeginPositionP3375169 ;
faldo:reference isoform:P33751-1 .
?templateMotifSequenceProfileAlignmentOperationP3375175 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0198479 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33751MF_0198470 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0198478 .
?targetMotifMatchRegionMatchBeginMF_0198478 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0198471 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0198479 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33751MF_0198468, 1, (STRLEN(?templateMotifCigarP33751MF_0198468) - STRLEN(REPLACE(?templateMotifCigarP33751MF_0198468, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionP3375169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33751MF_0198470, 1, (STRLEN(?targetMotifMatchCigarP33751MF_0198470) - STRLEN(REPLACE(?targetMotifMatchCigarP33751MF_0198470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33751MF_0198470, 1, (STRLEN(?targetMotifMatchCigarP33751MF_0198470) - STRLEN(REPLACE(?targetMotifMatchCigarP33751MF_0198470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0198471) - 1) AS ?thisPositionOn21) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33751MF_0198468, 1, (STRLEN(?templateMotifCigarP33751MF_0198468) - STRLEN(REPLACE(?templateMotifCigarP33751MF_0198468, CONCAT('^(?:-*[^-]){', STR(((143 - ?templateMotifSequenceMatchBeginPositionP3375169) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33751MF_0198470, 1, (STRLEN(?targetMotifMatchCigarP33751MF_0198470) - STRLEN(REPLACE(?targetMotifMatchCigarP33751MF_0198470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33751MF_0198470, 1, (STRLEN(?targetMotifMatchCigarP33751MF_0198470) - STRLEN(REPLACE(?targetMotifMatchCigarP33751MF_0198470, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0198471) - 1) AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER (REGEX('[ST][ARNDCQEGHILKMFPSTWYVBZJUOX]{2)[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, (?thisPositionOn22 - ?thisPositionOn21)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03197a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch89 faldo:location ?templateMotifSequenceMatchRegionP3375190 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3375192 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33751MF_0198485 .
?templateMotifSequenceMatchRegionP3375190 faldo:begin ?templateMotifSequenceMatchBeginP3375191 .
?templateMotifSequenceMatchBeginP3375191 faldo:position ?templateMotifSequenceMatchBeginPositionP3375186 ;
faldo:reference isoform:P33751-1 .
?templateMotifSequenceProfileAlignmentOperationP3375192 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
?targetMotifMatch93 faldo:location ?targetMotifMatchRegionMatch94 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0198496 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33751MF_0198487 .
?targetMotifMatchRegionMatch94 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0198495 .
?targetMotifMatchRegionMatchBeginMF_0198495 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0198488 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0198496 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33751MF_0198485, 1, (STRLEN(?templateMotifCigarP33751MF_0198485) - STRLEN(REPLACE(?templateMotifCigarP33751MF_0198485, CONCAT('^(?:-*[^-]){', STR(((89 - ?templateMotifSequenceMatchBeginPositionP3375186) + 1)), '}'), '')))), '[a-z]', '')) AS ?step197) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33751MF_0198487, 1, (STRLEN(?targetMotifMatchCigarP33751MF_0198487) - STRLEN(REPLACE(?targetMotifMatchCigarP33751MF_0198487, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33751MF_0198487, 1, (STRLEN(?targetMotifMatchCigarP33751MF_0198487) - STRLEN(REPLACE(?targetMotifMatchCigarP33751MF_0198487, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step197), '}'), '')))), '[^-]', ''))) AS ?step298) .
BIND(((?step298 + ?targetMotifMatchRegionMatchBeginPositionMF_0198488) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t99) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03197a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch104 faldo:location ?templateMotifSequenceMatchRegionP33751105 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33751107 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33751MF_01984100 .
?templateMotifSequenceMatchRegionP33751105 faldo:begin ?templateMotifSequenceMatchBeginP33751106 .
?templateMotifSequenceMatchBeginP33751106 faldo:position ?templateMotifSequenceMatchBeginPositionP33751101 ;
faldo:reference isoform:P33751-1 .
?templateMotifSequenceProfileAlignmentOperationP33751107 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
?targetMotifMatch108 faldo:location ?targetMotifMatchRegionMatch109 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01984111 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33751MF_01984102 .
?targetMotifMatchRegionMatch109 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01984110 .
?targetMotifMatchRegionMatchBeginMF_01984110 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01984103 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01984111 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33751MF_01984100, 1, (STRLEN(?templateMotifCigarP33751MF_01984100) - STRLEN(REPLACE(?templateMotifCigarP33751MF_01984100, CONCAT('^(?:-*[^-]){', STR(((175 - ?templateMotifSequenceMatchBeginPositionP33751101) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33751MF_01984102, 1, (STRLEN(?targetMotifMatchCigarP33751MF_01984102) - STRLEN(REPLACE(?targetMotifMatchCigarP33751MF_01984102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33751MF_01984102, 1, (STRLEN(?targetMotifMatchCigarP33751MF_01984102) - STRLEN(REPLACE(?targetMotifMatchCigarP33751MF_01984102, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_01984103) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_03197a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionP33751120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33751122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33751MF_01984115 .
?templateMotifSequenceMatchRegionP33751120 faldo:begin ?templateMotifSequenceMatchBeginP33751121 .
?templateMotifSequenceMatchBeginP33751121 faldo:position ?templateMotifSequenceMatchBeginPositionP33751116 ;
faldo:reference isoform:P33751-1 .
?templateMotifSequenceProfileAlignmentOperationP33751122 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01984126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33751MF_01984117 .
?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01984125 .
?targetMotifMatchRegionMatchBeginMF_01984125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01984118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01984126 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33751MF_01984115, 1, (STRLEN(?templateMotifCigarP33751MF_01984115) - STRLEN(REPLACE(?templateMotifCigarP33751MF_01984115, CONCAT('^(?:-*[^-]){', STR(((205 - ?templateMotifSequenceMatchBeginPositionP33751116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33751MF_01984117, 1, (STRLEN(?targetMotifMatchCigarP33751MF_01984117) - STRLEN(REPLACE(?targetMotifMatchCigarP33751MF_01984117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33751MF_01984117, 1, (STRLEN(?targetMotifMatchCigarP33751MF_01984117) - STRLEN(REPLACE(?targetMotifMatchCigarP33751MF_01984117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_01984118) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_03197a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionP33751135 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP33751137 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP33751MF_01984130 .
?templateMotifSequenceMatchRegionP33751135 faldo:begin ?templateMotifSequenceMatchBeginP33751136 .
?templateMotifSequenceMatchBeginP33751136 faldo:position ?templateMotifSequenceMatchBeginPositionP33751131 ;
faldo:reference isoform:P33751-1 .
?templateMotifSequenceProfileAlignmentOperationP33751137 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_01984141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP33751MF_01984132 .
?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_01984140 .
?targetMotifMatchRegionMatchBeginMF_01984140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_01984133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_01984141 edam:has_input signature:MF_01984 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP33751MF_01984130, 1, (STRLEN(?templateMotifCigarP33751MF_01984130) - STRLEN(REPLACE(?templateMotifCigarP33751MF_01984130, CONCAT('^(?:-*[^-]){', STR(((221 - ?templateMotifSequenceMatchBeginPositionP33751131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP33751MF_01984132, 1, (STRLEN(?targetMotifMatchCigarP33751MF_01984132) - STRLEN(REPLACE(?targetMotifMatchCigarP33751MF_01984132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP33751MF_01984132, 1, (STRLEN(?targetMotifMatchCigarP33751MF_01984132) - STRLEN(REPLACE(?targetMotifMatchCigarP33751MF_01984132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_01984133) - 1) AS ?thisPositionOn49) .
BIND(?thisPositionOn49 AS ?thisPositionOn50) .
BIND(?this AS ?pfs1t144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfse47) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn49, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03197a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
}
"xsd:string |
