| http://purl.uniprot.org/unirules/MF_03201#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:876651 up:source unirule:MF_03201 .
_:876652 up:source unirule:MF_03201 .
_:876653 up:source unirule:MF_03201 .
_:876654 up:source unirule:MF_03201 .
_:876655 up:source unirule:MF_03201 .
_:876656 up:source unirule:MF_03201 .
_:876657 up:source unirule:MF_03201 .
_:876658 up:source unirule:MF_03201 .
_:876659 up:source unirule:MF_03201 .
_:876660 up:source unirule:MF_03201 .
_:876661 up:source unirule:MF_03201 .
_:876662 up:source unirule:MF_03201 .
_:876663 up:source unirule:MF_03201 .
_:876664 up:source unirule:MF_03201 .
_:876665 up:source unirule:MF_03201 .
_:876666 up:source unirule:MF_03201 .
_:876667 up:source unirule:MF_03201 .
_:876668 up:source unirule:MF_03201 .
_:876669 up:source unirule:MF_03201 .
_:876670 up:source unirule:MF_03201 .
_:876671 up:source unirule:MF_03201 .
_:876672 up:source unirule:MF_03201 .
_:876673 up:source unirule:MF_03201 .
_:876674 up:source unirule:MF_03201 .
_:876675 up:source unirule:MF_03201 .
_:876676 up:source unirule:MF_03201 .
_:876677 up:source unirule:MF_03201 .
_:876678 up:source unirule:MF_03201 .
_:876679 up:source unirule:MF_03201 .
?this up:alternativeName ?name1 ,
?name3 ,
?name4 ,
?name5 ;
up:annotation ?annotation7 ,
?annotation9 ,
?annotation10 ,
?annotation12 ;
up:classifiedWith GO:0005789 ,
GO:0006636 ,
GO:0009922 ,
GO:0016020 ,
GO:0019367 ,
GO:0034625 ,
GO:0035338 ,
GO:0042761 ,
keyword:256 ,
keyword:275 ,
keyword:276 ,
keyword:443 ,
keyword:444 ,
keyword:472 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.3.1.199' ;
up:fullName 'Elongation of very long chain fatty acids protein 1' ;
rdf:type up:Structured_Name .
?name1 up:fullName ?nameValue2 ;
rdf:type up:Structured_Name .
?name3 up:fullName 'ELOVL fatty acid elongase 1' ;
up:shortName 'ELOVL FA elongase 1' ;
rdf:type up:Structured_Name .
?name4 up:fullName 'Very long chain 3-ketoacyl-CoA synthase 1' ;
rdf:type up:Structured_Name .
?name5 up:fullName 'Very long chain 3-oxoacyl-CoA synthase 1' ;
rdf:type up:Structured_Name .
?gene6 skos:prefLabel 'ELOVL1' .
?annotation7 up:activity ?activity8 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity8 up:catalyticActivity ;
up:enzymeClass .
?annotation9 a up:Pathway_Annotation ;
rdfs:comment 'Lipid metabolism; fatty acid biosynthesis.' .
?annotation10 a up:Subcellular_Location_Annotation .
?annotation10li11 up:cellularComponent .
?annotation12 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the ELO family. ELOVL1 subfamily.' .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Di-lysine motif' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?sam22 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane23 faldo:begin ?transmembraneb24 ;
faldo:end ?transmembranee25 .
?transmembraneb24 faldo:position ?transmembranebp26 .
?transmembranee25 faldo:position ?transmembraneep27 .
?keyword28 up:range ?transmembrane23 .
?keyword29 up:range ?transmembrane23 .
?keyword30 up:range ?transmembrane23 .
_:876680 a rdf:Statement ;
up:attribution _:876651 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:876681 a rdf:Statement ;
up:attribution _:876652 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:876682 a rdf:Statement ;
up:attribution _:876653 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:876683 a rdf:Statement ;
up:attribution _:876654 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name4 .
_:876684 a rdf:Statement ;
up:attribution _:876655 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name5 .
_:876685 a rdf:Statement ;
up:attribution _:876656 ;
rdf:subject ?gene6 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene6 .
_:876686 a rdf:Statement ;
up:attribution _:876657 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:876687 a rdf:Statement ;
up:attribution _:876658 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:876688 a rdf:Statement ;
up:attribution _:876659 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:876689 a rdf:Statement ;
up:attribution _:876660 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:876690 a rdf:Statement ;
up:attribution _:876661 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:256 .
_:876691 a rdf:Statement ;
up:attribution _:876662 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:275 .
_:876692 a rdf:Statement ;
up:attribution _:876663 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:276 .
_:876693 a rdf:Statement ;
up:attribution _:876664 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:444 .
_:876694 a rdf:Statement ;
up:attribution _:876665 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:443 .
_:876695 a rdf:Statement ;
up:attribution _:876666 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:876696 a rdf:Statement ;
up:attribution _:876667 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:876697 a rdf:Statement ;
up:attribution _:876668 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005789 .
_:876698 a rdf:Statement ;
up:attribution _:876669 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016020 .
_:876699 a rdf:Statement ;
up:attribution _:876670 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009922 .
_:876700 a rdf:Statement ;
up:attribution _:876671 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006636 .
_:876701 a rdf:Statement ;
up:attribution _:876672 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019367 .
_:876702 a rdf:Statement ;
up:attribution _:876673 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0034625 .
_:876703 a rdf:Statement ;
up:attribution _:876674 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0035338 .
_:876704 a rdf:Statement ;
up:attribution _:876675 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042761 .
_:876705 a rdf:Statement ;
up:source unirule:MF_03201 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:876706 a rdf:Statement ;
up:attribution _:876676 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:876707 a rdf:Statement ;
up:attribution _:876677 ;
rdf:subject ?sam22 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:876708 a rdf:Statement ;
up:attribution _:876678 ;
rdf:subject ?sam22 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:876709 a rdf:Statement ;
up:attribution _:876679 ;
rdf:subject ?sam22 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03201
#Rule MF_03201 Created by:? on:2013-12-16 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03201 .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(URI(CONCAT(STR(?this), '#MF_03201a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03201a1')) AS ?name1) .
OPTIONAL {
?this up:encodedBy ?gene34 .
?gene34 up:locusName ?geneLocus32 .
}
OPTIONAL {
?this up:encodedBy ?gene34 .
?gene34 up:orfName ?geneOrf33 .
}
BIND(IF(BOUND(?geneLocus32), ?geneLocus32, ?geneOrf33) AS ?part31) .
BIND(CONCAT('3-keto acyl-CoA synthase ', ?part31) AS ?nameValue2) .
BIND(URI(CONCAT(STR(?this), '#MF_03201a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_03201a4')) AS ?name4) .
BIND(URI(CONCAT(STR(?this), '#MF_03201a5')) AS ?name5) .
BIND(URI(CONCAT(STR(?this), '#MF_03201a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_03201a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_03201a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_03201a12')) AS ?annotation12) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch39 faldo:location ?templateMotifSequenceMatchRegionQ9BW6040 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9BW6042 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9BW60MF_0320135 .
?templateMotifSequenceMatchRegionQ9BW6040 faldo:begin ?templateMotifSequenceMatchBeginQ9BW6041 .
?templateMotifSequenceMatchBeginQ9BW6041 faldo:position ?templateMotifSequenceMatchBeginPositionQ9BW6036 ;
faldo:reference isoform:Q9BW60-1 .
?templateMotifSequenceProfileAlignmentOperationQ9BW6042 edam:has_input signature:MF_03201 ;
rdf:type edam:operation_0300 .
?targetMotifMatch43 faldo:location ?targetMotifMatchRegionMatch44 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0320146 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9BW60MF_0320137 .
?targetMotifMatchRegionMatch44 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0320145 .
?targetMotifMatchRegionMatchBeginMF_0320145 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0320138 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0320146 edam:has_input signature:MF_03201 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagERmotif) .
BIND((STRLEN(?thisSequenceValue) - 4) AS ?thisPositionOn20) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER (REGEX('K[ARNDCQEGHILKMFPSTWYVBZJUOX]K[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)$', SUBSTR(?thisSequenceValue, ?thisPositionOn20, (?thisPositionOn21 - ?thisPositionOn20)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03201a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag48) .
}
BIND(IF(BOUND(?tagERmotif), ?caseWithTag48, ?UNBOUND_VARIABLE) AS ?case13) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:40674 .
BIND(?this AS ?case14) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:40674 .
})) .
BIND(?this AS ?case15) .
}
OPTIONAL {
?this up:annotation ?samtransmembrane49 ;
up:sequence ?thisSequence .
?samtransmembrane49 up:range ?samtransmembraner50 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner50 faldo:begin ?samtransmembraneb51 ;
faldo:end ?samtransmembranee52 .
?samtransmembraneb51 faldo:position ?samtransmembranebp53 ;
faldo:reference ?thisSequence .
?samtransmembranee52 faldo:position ?samtransmembraneep54 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam22) .
}
BIND(URI(CONCAT(STR(?this), '#MF_03201a28')) AS ?keyword28) .
BIND(URI(CONCAT(STR(?this), '#MF_03201a29')) AS ?keyword29) .
BIND(URI(CONCAT(STR(?this), '#MF_03201a30')) AS ?keyword30) .
}
"xsd:string |
