| http://purl.uniprot.org/unirules/MF_03202#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:877178 up:source unirule:MF_03202 .
_:877179 up:source unirule:MF_03202 .
_:877180 up:source unirule:MF_03202 .
_:877181 up:source unirule:MF_03202 .
_:877182 up:source unirule:MF_03202 .
_:877183 up:source unirule:MF_03202 .
_:877184 up:source unirule:MF_03202 .
_:877185 up:source unirule:MF_03202 .
_:877186 up:source unirule:MF_03202 .
_:877187 up:source unirule:MF_03202 .
_:877188 up:source unirule:MF_03202 .
_:877189 up:source unirule:MF_03202 .
_:877190 up:source unirule:MF_03202 .
_:877191 up:source unirule:MF_03202 .
_:877192 up:source unirule:MF_03202 .
_:877193 up:source unirule:MF_03202 .
_:877194 up:source unirule:MF_03202 .
_:877195 up:source unirule:MF_03202 .
_:877196 up:source unirule:MF_03202 .
_:877197 up:source unirule:MF_03202 .
_:877198 up:source unirule:MF_03202 .
_:877199 up:source unirule:MF_03202 .
_:877200 up:source unirule:MF_03202 .
_:877201 up:source unirule:MF_03202 .
_:877202 up:source unirule:MF_03202 .
_:877203 up:source unirule:MF_03202 .
_:877204 up:source unirule:MF_03202 .
_:877205 up:source unirule:MF_03202 .
?this up:alternativeName ?name1 ,
?name3 ,
?name4 ,
?name5 ;
up:annotation ?annotation7 ,
?annotation8 ,
?annotation10 ,
?annotation11 ,
?annotation13 ;
up:classifiedWith GO:0005789 ,
GO:0006636 ,
GO:0009922 ,
GO:0016020 ,
GO:0034626 ,
GO:0042761 ,
keyword:256 ,
keyword:275 ,
keyword:276 ,
keyword:443 ,
keyword:444 ,
keyword:472 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.3.1.199' ;
up:fullName 'Elongation of very long chain fatty acids protein 2' ;
rdf:type up:Structured_Name .
?name1 up:fullName ?nameValue2 ;
rdf:type up:Structured_Name .
?name3 up:fullName 'ELOVL fatty acid elongase 2' ;
up:shortName 'ELOVL FA elongase 2' ;
rdf:type up:Structured_Name .
?name4 up:fullName 'Very long chain 3-ketoacyl-CoA synthase 2' ;
rdf:type up:Structured_Name .
?name5 up:fullName 'Very long chain 3-oxoacyl-CoA synthase 2' ;
rdf:type up:Structured_Name .
?gene6 skos:prefLabel 'ELOVL2' .
?annotation7 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the first and rate-limiting reaction of the four reactions that constitute the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process allows the addition of 2 carbons to the chain of long- and very long-chain fatty acids (VLCFAs) per cycle. Acts specifically toward polyunsaturated acyl-CoA with the higher activity toward C20:4(n-6) acyl-CoA. Condensing enzyme that catalyzes the synthesis of polyunsaturated very long chain fatty acid (C20- and C22-PUFA). May participate to the production of polyunsaturated VLCFAs of different chain lengths that are involved in multiple biological processes as precursors of membrane lipids and lipid mediators.' .
?annotation8 up:activity ?activity9 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity9 up:catalyticActivity ;
up:enzymeClass .
?annotation10 a up:Pathway_Annotation ;
rdfs:comment 'Lipid metabolism; polyunsaturated fatty acid biosynthesis.' .
?annotation11 a up:Subcellular_Location_Annotation .
?annotation11li12 up:cellularComponent .
?annotation13 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the ELO family. ELOVL2 subfamily.' .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Motif_Annotation ;
rdfs:comment 'Di-lysine motif' .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?sam21 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane22 faldo:begin ?transmembraneb23 ;
faldo:end ?transmembranee24 .
?transmembraneb23 faldo:position ?transmembranebp25 .
?transmembranee24 faldo:position ?transmembraneep26 .
?keyword27 up:range ?transmembrane22 .
?keyword28 up:range ?transmembrane22 .
?keyword29 up:range ?transmembrane22 .
_:877206 a rdf:Statement ;
up:attribution _:877178 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:877207 a rdf:Statement ;
up:attribution _:877179 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:877208 a rdf:Statement ;
up:attribution _:877180 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name3 .
_:877209 a rdf:Statement ;
up:attribution _:877181 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name4 .
_:877210 a rdf:Statement ;
up:attribution _:877182 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name5 .
_:877211 a rdf:Statement ;
up:attribution _:877183 ;
rdf:subject ?gene6 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene6 .
_:877212 a rdf:Statement ;
up:attribution _:877184 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:877213 a rdf:Statement ;
up:attribution _:877185 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:877214 a rdf:Statement ;
up:attribution _:877186 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:877215 a rdf:Statement ;
up:attribution _:877187 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:877216 a rdf:Statement ;
up:attribution _:877188 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:877217 a rdf:Statement ;
up:attribution _:877189 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:256 .
_:877218 a rdf:Statement ;
up:attribution _:877190 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:275 .
_:877219 a rdf:Statement ;
up:attribution _:877191 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:276 .
_:877220 a rdf:Statement ;
up:attribution _:877192 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:444 .
_:877221 a rdf:Statement ;
up:attribution _:877193 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:443 .
_:877222 a rdf:Statement ;
up:attribution _:877194 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:877223 a rdf:Statement ;
up:attribution _:877195 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:877224 a rdf:Statement ;
up:attribution _:877196 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005789 .
_:877225 a rdf:Statement ;
up:attribution _:877197 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016020 .
_:877226 a rdf:Statement ;
up:attribution _:877198 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009922 .
_:877227 a rdf:Statement ;
up:attribution _:877199 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0034626 .
_:877228 a rdf:Statement ;
up:attribution _:877200 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042761 .
_:877229 a rdf:Statement ;
up:attribution _:877201 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006636 .
_:877230 a rdf:Statement ;
up:source unirule:MF_03202 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:877231 a rdf:Statement ;
up:attribution _:877202 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:877232 a rdf:Statement ;
up:attribution _:877203 ;
rdf:subject ?sam21 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:877233 a rdf:Statement ;
up:attribution _:877204 ;
rdf:subject ?sam21 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:877234 a rdf:Statement ;
up:attribution _:877205 ;
rdf:subject ?sam21 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03202
#Rule MF_03202 Created by:? on:2013-12-16 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03202 .
?thisOrganism rdfs:subClassOf+ taxon:7742 .
BIND(URI(CONCAT(STR(?this), '#MF_03202a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03202a1')) AS ?name1) .
OPTIONAL {
?this up:encodedBy ?gene33 .
?gene33 up:locusName ?geneLocus31 .
}
OPTIONAL {
?this up:encodedBy ?gene33 .
?gene33 up:orfName ?geneOrf32 .
}
BIND(IF(BOUND(?geneLocus31), ?geneLocus31, ?geneOrf32) AS ?part30) .
BIND(CONCAT('3-keto acyl-CoA synthase ', ?part30) AS ?nameValue2) .
BIND(URI(CONCAT(STR(?this), '#MF_03202a3')) AS ?name3) .
BIND(URI(CONCAT(STR(?this), '#MF_03202a4')) AS ?name4) .
BIND(URI(CONCAT(STR(?this), '#MF_03202a5')) AS ?name5) .
BIND(URI(CONCAT(STR(?this), '#MF_03202a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_03202a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_03202a10')) AS ?annotation10) .
BIND(URI(CONCAT(STR(?this), '#MF_03202a11')) AS ?annotation11) .
BIND(URI(CONCAT(STR(?this), '#MF_03202a13')) AS ?annotation13) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch38 faldo:location ?templateMotifSequenceMatchRegionQ9NXB939 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9NXB941 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9NXB9MF_0320234 .
?templateMotifSequenceMatchRegionQ9NXB939 faldo:begin ?templateMotifSequenceMatchBeginQ9NXB940 .
?templateMotifSequenceMatchBeginQ9NXB940 faldo:position ?templateMotifSequenceMatchBeginPositionQ9NXB935 ;
faldo:reference isoform:Q9NXB9-1 .
?templateMotifSequenceProfileAlignmentOperationQ9NXB941 edam:has_input signature:MF_03202 ;
rdf:type edam:operation_0300 .
?targetMotifMatch42 faldo:location ?targetMotifMatchRegionMatch43 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0320245 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9NXB9MF_0320236 .
?targetMotifMatchRegionMatch43 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0320244 .
?targetMotifMatchRegionMatchBeginMF_0320244 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0320237 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0320245 edam:has_input signature:MF_03202 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagERmotif) .
BIND((STRLEN(?thisSequenceValue) - 3) AS ?thisPositionOn19) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER (REGEX('KK[ARNDCQEGHILKMFPSTWYVBZJUOX]{2)$', SUBSTR(?thisSequenceValue, ?thisPositionOn19, (?thisPositionOn20 - ?thisPositionOn19)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03202a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag47) .
}
BIND(IF(BOUND(?tagERmotif), ?caseWithTag47, ?UNBOUND_VARIABLE) AS ?case14) .
OPTIONAL {
?this up:annotation ?samtransmembrane48 ;
up:sequence ?thisSequence .
?samtransmembrane48 up:range ?samtransmembraner49 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner49 faldo:begin ?samtransmembraneb50 ;
faldo:end ?samtransmembranee51 .
?samtransmembraneb50 faldo:position ?samtransmembranebp52 ;
faldo:reference ?thisSequence .
?samtransmembranee51 faldo:position ?samtransmembraneep53 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam21) .
}
BIND(URI(CONCAT(STR(?this), '#MF_03202a27')) AS ?keyword27) .
BIND(URI(CONCAT(STR(?this), '#MF_03202a28')) AS ?keyword28) .
BIND(URI(CONCAT(STR(?this), '#MF_03202a29')) AS ?keyword29) .
}
"xsd:string |
