| http://purl.uniprot.org/unirules/MF_03223#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:889540 up:source unirule:MF_03223 .
_:889541 up:source unirule:MF_03223 .
_:889542 up:source unirule:MF_03223 .
_:889543 up:source unirule:MF_03223 .
_:889544 up:source unirule:MF_03223 .
_:889545 up:source unirule:MF_03223 .
_:889546 up:source unirule:MF_03223 .
_:889547 up:source unirule:MF_03223 .
_:889548 up:source unirule:MF_03223 .
_:889549 up:source unirule:MF_03223 .
_:889550 up:source unirule:MF_03223 .
_:889551 up:source unirule:MF_03223 .
_:889552 up:source unirule:MF_03223 .
_:889553 up:source unirule:MF_03223 .
_:889554 up:source unirule:MF_03223 .
_:889555 up:source unirule:MF_03223 .
_:889556 up:source unirule:MF_03223 .
_:889557 up:source unirule:MF_03223 .
_:889558 up:source unirule:MF_03223 .
_:889559 up:source unirule:MF_03223 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0005737 ,
GO:0016279 ,
GO:0018013 ,
GO:0018027 ,
GO:0071885 ,
keyword:489 ,
keyword:808 ,
keyword:949 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.-' ;
up:fullName 'Protein N-terminal and lysine N-methyltransferase EFM7' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Elongation factor methyltransferase 7' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'EFM7' .
?annotation3 a up:Function_Annotation ;
rdfs:comment "S-adenosyl-L-methionine-dependent protein methyltransferase that trimethylates the N-terminal glycine 'Gly-2' of elongation factor 1-alpha, before also catalyzing the mono- and dimethylation of 'Lys-3'." .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM7 family.' .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf chebi:59789 .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:59789 .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
up:ligand ?ligand25 ;
rdf:type up:Binding_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?ligand25 rdfs:subClassOf chebi:59789 .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:59789 .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:59789 .
_:889560 a rdf:Statement ;
up:attribution _:889540 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:889561 a rdf:Statement ;
up:attribution _:889541 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:889562 a rdf:Statement ;
up:attribution _:889542 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:889563 a rdf:Statement ;
up:attribution _:889543 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:889564 a rdf:Statement ;
up:attribution _:889544 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:889565 a rdf:Statement ;
up:attribution _:889545 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:889566 a rdf:Statement ;
up:attribution _:889546 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:889567 a rdf:Statement ;
up:attribution _:889547 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:889568 a rdf:Statement ;
up:attribution _:889548 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:889569 a rdf:Statement ;
up:attribution _:889549 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:889570 a rdf:Statement ;
up:attribution _:889550 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:889571 a rdf:Statement ;
up:attribution _:889551 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0071885 .
_:889572 a rdf:Statement ;
up:attribution _:889552 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016279 .
_:889573 a rdf:Statement ;
up:attribution _:889553 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0018013 .
_:889574 a rdf:Statement ;
up:attribution _:889554 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0018027 .
_:889575 a rdf:Statement ;
up:source unirule:MF_03223 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:889576 a rdf:Statement ;
up:attribution _:889555 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:889577 a rdf:Statement ;
up:source unirule:MF_03223 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:889578 a rdf:Statement ;
up:attribution _:889556 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:889579 a rdf:Statement ;
up:source unirule:MF_03223 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:889580 a rdf:Statement ;
up:attribution _:889557 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:889581 a rdf:Statement ;
up:source unirule:MF_03223 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:889582 a rdf:Statement ;
up:attribution _:889558 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:889583 a rdf:Statement ;
up:source unirule:MF_03223 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:889584 a rdf:Statement ;
up:attribution _:889559 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_03223
#Rule MF_03223 Created by:? on:2017-03-28 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_03223 .
?thisOrganism rdfs:subClassOf+ taxon:4751 .
BIND(URI(CONCAT(STR(?this), '#MF_03223a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_03223a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_03223a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_03223a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_03223a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch46 faldo:location ?templateMotifSequenceMatchRegionQ0587447 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0587449 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ05874MF_0322342 .
?templateMotifSequenceMatchRegionQ0587447 faldo:begin ?templateMotifSequenceMatchBeginQ0587448 .
?templateMotifSequenceMatchBeginQ0587448 faldo:position ?templateMotifSequenceMatchBeginPositionQ0587443 ;
faldo:reference isoform:Q05874-1 .
?templateMotifSequenceProfileAlignmentOperationQ0587449 edam:has_input signature:MF_03223 ;
rdf:type edam:operation_0300 .
?targetMotifMatch50 faldo:location ?targetMotifMatchRegionMatch51 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0322353 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ05874MF_0322344 .
?targetMotifMatchRegionMatch51 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0322352 .
?targetMotifMatchRegionMatchBeginMF_0322352 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0322345 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0322353 edam:has_input signature:MF_03223 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ05874MF_0322342, 1, (STRLEN(?templateMotifCigarQ05874MF_0322342) - STRLEN(REPLACE(?templateMotifCigarQ05874MF_0322342, CONCAT('^(?:-*[^-]){', STR(((90 - ?templateMotifSequenceMatchBeginPositionQ0587443) + 1)), '}'), '')))), '[a-z]', '')) AS ?step154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ05874MF_0322344, 1, (STRLEN(?targetMotifMatchCigarQ05874MF_0322344) - STRLEN(REPLACE(?targetMotifMatchCigarQ05874MF_0322344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ05874MF_0322344, 1, (STRLEN(?targetMotifMatchCigarQ05874MF_0322344) - STRLEN(REPLACE(?targetMotifMatchCigarQ05874MF_0322344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step154), '}'), '')))), '[^-]', ''))) AS ?step255) .
BIND(((?step255 + ?targetMotifMatchRegionMatchBeginPositionMF_0322345) - 1) AS ?thisPositionOn12) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ05874MF_0322342, 1, (STRLEN(?templateMotifCigarQ05874MF_0322342) - STRLEN(REPLACE(?templateMotifCigarQ05874MF_0322342, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionQ0587443) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ05874MF_0322344, 1, (STRLEN(?targetMotifMatchCigarQ05874MF_0322344) - STRLEN(REPLACE(?targetMotifMatchCigarQ05874MF_0322344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ05874MF_0322344, 1, (STRLEN(?targetMotifMatchCigarQ05874MF_0322344) - STRLEN(REPLACE(?targetMotifMatchCigarQ05874MF_0322344, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0322345) - 1) AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse10) .
FILTER (REGEX('GA[GA]', SUBSTR(?thisSequenceValue, ?thisPositionOn12, (?thisPositionOn13 - ?thisPositionOn12)))) .
BIND(URI(CONCAT(STR(?this), '#MF_03223a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch63 faldo:location ?templateMotifSequenceMatchRegionQ0587464 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0587466 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ05874MF_0322359 .
?templateMotifSequenceMatchRegionQ0587464 faldo:begin ?templateMotifSequenceMatchBeginQ0587465 .
?templateMotifSequenceMatchBeginQ0587465 faldo:position ?templateMotifSequenceMatchBeginPositionQ0587460 ;
faldo:reference isoform:Q05874-1 .
?templateMotifSequenceProfileAlignmentOperationQ0587466 edam:has_input signature:MF_03223 ;
rdf:type edam:operation_0300 .
?targetMotifMatch67 faldo:location ?targetMotifMatchRegionMatch68 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0322370 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ05874MF_0322361 .
?targetMotifMatchRegionMatch68 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0322369 .
?targetMotifMatchRegionMatchBeginMF_0322369 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0322362 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0322370 edam:has_input signature:MF_03223 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ05874MF_0322359, 1, (STRLEN(?templateMotifCigarQ05874MF_0322359) - STRLEN(REPLACE(?templateMotifCigarQ05874MF_0322359, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionQ0587460) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ05874MF_0322361, 1, (STRLEN(?targetMotifMatchCigarQ05874MF_0322361) - STRLEN(REPLACE(?targetMotifMatchCigarQ05874MF_0322361, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ05874MF_0322361, 1, (STRLEN(?targetMotifMatchCigarQ05874MF_0322361) - STRLEN(REPLACE(?targetMotifMatchCigarQ05874MF_0322361, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0322362) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_03223a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionQ0587479 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0587481 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ05874MF_0322374 .
?templateMotifSequenceMatchRegionQ0587479 faldo:begin ?templateMotifSequenceMatchBeginQ0587480 .
?templateMotifSequenceMatchBeginQ0587480 faldo:position ?templateMotifSequenceMatchBeginPositionQ0587475 ;
faldo:reference isoform:Q05874-1 .
?templateMotifSequenceProfileAlignmentOperationQ0587481 edam:has_input signature:MF_03223 ;
rdf:type edam:operation_0300 .
?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0322385 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ05874MF_0322376 .
?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0322384 .
?targetMotifMatchRegionMatchBeginMF_0322384 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0322377 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0322385 edam:has_input signature:MF_03223 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ05874MF_0322374, 1, (STRLEN(?templateMotifCigarQ05874MF_0322374) - STRLEN(REPLACE(?templateMotifCigarQ05874MF_0322374, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionQ0587475) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ05874MF_0322376, 1, (STRLEN(?targetMotifMatchCigarQ05874MF_0322376) - STRLEN(REPLACE(?targetMotifMatchCigarQ05874MF_0322376, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ05874MF_0322376, 1, (STRLEN(?targetMotifMatchCigarQ05874MF_0322376) - STRLEN(REPLACE(?targetMotifMatchCigarQ05874MF_0322376, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0322377) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs1t88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_03223a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionQ0587494 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0587496 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ05874MF_0322389 .
?templateMotifSequenceMatchRegionQ0587494 faldo:begin ?templateMotifSequenceMatchBeginQ0587495 .
?templateMotifSequenceMatchBeginQ0587495 faldo:position ?templateMotifSequenceMatchBeginPositionQ0587490 ;
faldo:reference isoform:Q05874-1 .
?templateMotifSequenceProfileAlignmentOperationQ0587496 edam:has_input signature:MF_03223 ;
rdf:type edam:operation_0300 .
?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03223100 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ05874MF_0322391 .
?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0322399 .
?targetMotifMatchRegionMatchBeginMF_0322399 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0322392 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03223100 edam:has_input signature:MF_03223 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ05874MF_0322389, 1, (STRLEN(?templateMotifCigarQ05874MF_0322389) - STRLEN(REPLACE(?templateMotifCigarQ05874MF_0322389, CONCAT('^(?:-*[^-]){', STR(((144 - ?templateMotifSequenceMatchBeginPositionQ0587490) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ05874MF_0322391, 1, (STRLEN(?targetMotifMatchCigarQ05874MF_0322391) - STRLEN(REPLACE(?targetMotifMatchCigarQ05874MF_0322391, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ05874MF_0322391, 1, (STRLEN(?targetMotifMatchCigarQ05874MF_0322391) - STRLEN(REPLACE(?targetMotifMatchCigarQ05874MF_0322391, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) .
BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0322392) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'W')) .
BIND(URI(CONCAT(STR(?this), '#MF_03223a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionQ05874109 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ05874111 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ05874MF_03223104 .
?templateMotifSequenceMatchRegionQ05874109 faldo:begin ?templateMotifSequenceMatchBeginQ05874110 .
?templateMotifSequenceMatchBeginQ05874110 faldo:position ?templateMotifSequenceMatchBeginPositionQ05874105 ;
faldo:reference isoform:Q05874-1 .
?templateMotifSequenceProfileAlignmentOperationQ05874111 edam:has_input signature:MF_03223 ;
rdf:type edam:operation_0300 .
?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_03223115 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ05874MF_03223106 .
?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_03223114 .
?targetMotifMatchRegionMatchBeginMF_03223114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_03223107 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_03223115 edam:has_input signature:MF_03223 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ05874MF_03223104, 1, (STRLEN(?templateMotifCigarQ05874MF_03223104) - STRLEN(REPLACE(?templateMotifCigarQ05874MF_03223104, CONCAT('^(?:-*[^-]){', STR(((171 - ?templateMotifSequenceMatchBeginPositionQ05874105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ05874MF_03223106, 1, (STRLEN(?targetMotifMatchCigarQ05874MF_03223106) - STRLEN(REPLACE(?targetMotifMatchCigarQ05874MF_03223106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ05874MF_03223106, 1, (STRLEN(?targetMotifMatchCigarQ05874MF_03223106) - STRLEN(REPLACE(?targetMotifMatchCigarQ05874MF_03223106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_03223107) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER (REGEX('[SA]', SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_03223a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
}
"xsd:string |
