| http://purl.uniprot.org/unirules/MF_04044#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:910413 up:source unirule:MF_04044 .
_:910414 up:source unirule:MF_04044 .
_:910415 up:source unirule:MF_04044 .
_:910416 up:source unirule:MF_04044 .
_:910417 up:source unirule:MF_04044 .
_:910418 up:source unirule:MF_04044 .
_:910419 up:source unirule:MF_04044 .
_:910420 up:source unirule:MF_04044 .
_:910421 up:source unirule:MF_04044 .
_:910422 up:source unirule:MF_04044 .
_:910423 up:source unirule:MF_04044 .
_:910424 up:source unirule:MF_04044 .
_:910425 up:source unirule:MF_04044 .
_:910426 up:source unirule:MF_04044 .
_:910427 up:source unirule:MF_04044 .
_:910428 up:source unirule:MF_04044 .
_:910429 up:source unirule:MF_04044 .
_:910430 up:source unirule:MF_04044 .
_:910431 up:source unirule:MF_04044 .
_:910432 up:source unirule:MF_04044 .
_:910433 up:source unirule:MF_04044 .
_:910434 up:source unirule:MF_04044 .
_:910435 up:source unirule:MF_04044 .
_:910436 up:source unirule:MF_04044 .
_:910437 up:source unirule:MF_04044 .
_:910438 up:source unirule:MF_04044 .
_:910439 up:source unirule:MF_04044 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0004843 ,
GO:0019033 ,
GO:0030430 ,
GO:0039648 ,
GO:0042025 ,
keyword:1035 ,
keyword:1048 ,
keyword:1127 ,
keyword:1130 ,
keyword:378 ,
keyword:645 ,
keyword:677 ,
keyword:788 ,
keyword:833 ,
keyword:920 ,
keyword:945 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.4.19.12' ,
'3.4.22.-' ;
up:fullName 'Large tegument protein deneddylase' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Large tegument protein that plays multiple roles in the viral cycle. During viral entry, remains associated with the capsid while most of the tegument is detached and participates in the capsid transport toward the host nucleus. Plays a role in the routing of the capsid at the nuclear pore complex and subsequent uncoating. Within the host nucleus, acts as a deneddylase and promotes the degradation of nuclear CRLs (cullin-RING ubiquitin ligases) and thereby stabilizes nuclear CRL substrates, while cytoplasmic CRLs remain unaffected. These modifications prevent host cell cycle S-phase progression and create a favorable environment allowing efficient viral genome replication. Participates later in the secondary envelopment of capsids. Indeed, plays a linker role for the association of the outer viral tegument to the capsids together with the inner tegument protein.' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:enzymeClass .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Interacts with host CUL1 and CUL4A; these interactions inhibit the E3 ligase activity of cullins. Interacts with inner tegument protein. Interacts with capsid vertex specific component CVC2. Interacts with the major capsid protein/MCP.' .
?annotation5 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Tightly associated with the capsid' .
?annotation5li6 up:cellularComponent .
?annotation5li7 up:cellularComponent .
?annotation5li8 up:cellularComponent .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Deubiquitination activity' .
?pfsb11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with inner tegument protein' .
?pfsb17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfs21 up:annotation ?annotation22 .
?annotation22 faldo:begin ?pfsb23 ;
faldo:end ?pfse24 ;
rdf:type up:Active_Site_Annotation .
?pfsb23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
rdf:type up:Active_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
rdf:type up:Active_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
_:910440 a rdf:Statement ;
up:attribution _:910413 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:910441 a rdf:Statement ;
up:attribution _:910414 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:910442 a rdf:Statement ;
up:attribution _:910415 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:910443 a rdf:Statement ;
up:attribution _:910416 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:910444 a rdf:Statement ;
up:attribution _:910417 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:910445 a rdf:Statement ;
up:attribution _:910418 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1035 .
_:910446 a rdf:Statement ;
up:attribution _:910419 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1048 .
_:910447 a rdf:Statement ;
up:attribution _:910420 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:945 .
_:910448 a rdf:Statement ;
up:attribution _:910421 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:910449 a rdf:Statement ;
up:attribution _:910422 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1127 .
_:910450 a rdf:Statement ;
up:attribution _:910423 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1130 .
_:910451 a rdf:Statement ;
up:attribution _:910424 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:645 .
_:910452 a rdf:Statement ;
up:attribution _:910425 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:677 .
_:910453 a rdf:Statement ;
up:attribution _:910426 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:788 .
_:910454 a rdf:Statement ;
up:attribution _:910427 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:833 .
_:910455 a rdf:Statement ;
up:attribution _:910428 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:910456 a rdf:Statement ;
up:attribution _:910429 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:920 .
_:910457 a rdf:Statement ;
up:attribution _:910430 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030430 .
_:910458 a rdf:Statement ;
up:attribution _:910431 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042025 .
_:910459 a rdf:Statement ;
up:attribution _:910432 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019033 .
_:910460 a rdf:Statement ;
up:attribution _:910433 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004843 .
_:910461 a rdf:Statement ;
up:attribution _:910434 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039648 .
_:910462 a rdf:Statement ;
up:source unirule:MF_04044 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:910463 a rdf:Statement ;
up:attribution _:910435 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:910464 a rdf:Statement ;
up:source unirule:MF_04044 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:910465 a rdf:Statement ;
up:attribution _:910436 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:910466 a rdf:Statement ;
up:source unirule:MF_04044 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:910467 a rdf:Statement ;
up:attribution _:910437 ;
rdf:subject ?pfs21 ;
rdf:predicate up:annotation ;
rdf:object ?annotation22 .
_:910468 a rdf:Statement ;
up:source unirule:MF_04044 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:910469 a rdf:Statement ;
up:attribution _:910438 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:910470 a rdf:Statement ;
up:source unirule:MF_04044 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:910471 a rdf:Statement ;
up:attribution _:910439 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04044
#Rule MF_04044 Created by:? on:2016-10-06 Modified by:Catherine Rivoire on:2024-04-25
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04044 .
?thisOrganism rdfs:subClassOf+ taxon:10292 .
BIND(URI(CONCAT(STR(?this), '#MF_04044a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04044a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_04044a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04044a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04044a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch43 faldo:location ?templateMotifSequenceMatchRegionP1022044 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1022046 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10220MF_0404439 .
?templateMotifSequenceMatchRegionP1022044 faldo:begin ?templateMotifSequenceMatchBeginP1022045 .
?templateMotifSequenceMatchBeginP1022045 faldo:position ?templateMotifSequenceMatchBeginPositionP1022040 ;
faldo:reference isoform:P10220-1 .
?templateMotifSequenceProfileAlignmentOperationP1022046 edam:has_input signature:MF_04044 ;
rdf:type edam:operation_0300 .
?targetMotifMatch47 faldo:location ?targetMotifMatchRegionMatch48 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0404450 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10220MF_0404441 .
?targetMotifMatchRegionMatch48 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0404449 .
?targetMotifMatchRegionMatchBeginMF_0404449 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0404442 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0404450 edam:has_input signature:MF_04044 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10220MF_0404439, 1, (STRLEN(?templateMotifCigarP10220MF_0404439) - STRLEN(REPLACE(?templateMotifCigarP10220MF_0404439, CONCAT('^(?:-*[^-]){', STR(((273 - ?templateMotifSequenceMatchBeginPositionP1022040) + 1)), '}'), '')))), '[a-z]', '')) AS ?step151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10220MF_0404441, 1, (STRLEN(?targetMotifMatchCigarP10220MF_0404441) - STRLEN(REPLACE(?targetMotifMatchCigarP10220MF_0404441, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10220MF_0404441, 1, (STRLEN(?targetMotifMatchCigarP10220MF_0404441) - STRLEN(REPLACE(?targetMotifMatchCigarP10220MF_0404441, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step151), '}'), '')))), '[^-]', ''))) AS ?step252) .
BIND(((?step252 + ?targetMotifMatchRegionMatchBeginPositionMF_0404442) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t53) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse12) .
FILTER ((BOUND(?thisPositionOn13) && BOUND(?thisPositionOn14))) .
BIND(URI(CONCAT(STR(?this), '#MF_04044a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch58 faldo:location ?templateMotifSequenceMatchRegionP1022059 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1022061 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10220MF_0404454 .
?templateMotifSequenceMatchRegionP1022059 faldo:begin ?templateMotifSequenceMatchBeginP1022060 .
?templateMotifSequenceMatchBeginP1022060 faldo:position ?templateMotifSequenceMatchBeginPositionP1022055 ;
faldo:reference isoform:P10220-1 .
?templateMotifSequenceProfileAlignmentOperationP1022061 edam:has_input signature:MF_04044 ;
rdf:type edam:operation_0300 .
?targetMotifMatch62 faldo:location ?targetMotifMatchRegionMatch63 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0404465 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10220MF_0404456 .
?targetMotifMatchRegionMatch63 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0404464 .
?targetMotifMatchRegionMatchBeginMF_0404464 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0404457 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0404465 edam:has_input signature:MF_04044 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10220MF_0404454, 1, (STRLEN(?templateMotifCigarP10220MF_0404454) - STRLEN(REPLACE(?templateMotifCigarP10220MF_0404454, CONCAT('^(?:-*[^-]){', STR(((579 - ?templateMotifSequenceMatchBeginPositionP1022055) + 1)), '}'), '')))), '[a-z]', '')) AS ?step166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10220MF_0404456, 1, (STRLEN(?targetMotifMatchCigarP10220MF_0404456) - STRLEN(REPLACE(?targetMotifMatchCigarP10220MF_0404456, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10220MF_0404456, 1, (STRLEN(?targetMotifMatchCigarP10220MF_0404456) - STRLEN(REPLACE(?targetMotifMatchCigarP10220MF_0404456, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step166), '}'), '')))), '[^-]', ''))) AS ?step267) .
BIND(((?step267 + ?targetMotifMatchRegionMatchBeginPositionMF_0404457) - 1) AS ?thisPositionOn19) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10220MF_0404454, 1, (STRLEN(?templateMotifCigarP10220MF_0404454) - STRLEN(REPLACE(?templateMotifCigarP10220MF_0404454, CONCAT('^(?:-*[^-]){', STR(((609 - ?templateMotifSequenceMatchBeginPositionP1022055) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10220MF_0404456, 1, (STRLEN(?targetMotifMatchCigarP10220MF_0404456) - STRLEN(REPLACE(?targetMotifMatchCigarP10220MF_0404456, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10220MF_0404456, 1, (STRLEN(?targetMotifMatchCigarP10220MF_0404456) - STRLEN(REPLACE(?targetMotifMatchCigarP10220MF_0404456, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0404457) - 1) AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse18) .
FILTER ((BOUND(?thisPositionOn19) && BOUND(?thisPositionOn20))) .
BIND(URI(CONCAT(STR(?this), '#MF_04044a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch75 faldo:location ?templateMotifSequenceMatchRegionP1022076 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1022078 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10220MF_0404471 .
?templateMotifSequenceMatchRegionP1022076 faldo:begin ?templateMotifSequenceMatchBeginP1022077 .
?templateMotifSequenceMatchBeginP1022077 faldo:position ?templateMotifSequenceMatchBeginPositionP1022072 ;
faldo:reference isoform:P10220-1 .
?templateMotifSequenceProfileAlignmentOperationP1022078 edam:has_input signature:MF_04044 ;
rdf:type edam:operation_0300 .
?targetMotifMatch79 faldo:location ?targetMotifMatchRegionMatch80 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0404482 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10220MF_0404473 .
?targetMotifMatchRegionMatch80 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0404481 .
?targetMotifMatchRegionMatchBeginMF_0404481 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0404474 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0404482 edam:has_input signature:MF_04044 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10220MF_0404471, 1, (STRLEN(?templateMotifCigarP10220MF_0404471) - STRLEN(REPLACE(?templateMotifCigarP10220MF_0404471, CONCAT('^(?:-*[^-]){', STR(((65 - ?templateMotifSequenceMatchBeginPositionP1022072) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10220MF_0404473, 1, (STRLEN(?targetMotifMatchCigarP10220MF_0404473) - STRLEN(REPLACE(?targetMotifMatchCigarP10220MF_0404473, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10220MF_0404473, 1, (STRLEN(?targetMotifMatchCigarP10220MF_0404473) - STRLEN(REPLACE(?targetMotifMatchCigarP10220MF_0404473, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) .
BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0404474) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb23) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse24) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_04044a22')) AS ?annotation22) .
BIND(?this AS ?pfs21) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch90 faldo:location ?templateMotifSequenceMatchRegionP1022091 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1022093 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10220MF_0404486 .
?templateMotifSequenceMatchRegionP1022091 faldo:begin ?templateMotifSequenceMatchBeginP1022092 .
?templateMotifSequenceMatchBeginP1022092 faldo:position ?templateMotifSequenceMatchBeginPositionP1022087 ;
faldo:reference isoform:P10220-1 .
?templateMotifSequenceProfileAlignmentOperationP1022093 edam:has_input signature:MF_04044 ;
rdf:type edam:operation_0300 .
?targetMotifMatch94 faldo:location ?targetMotifMatchRegionMatch95 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0404497 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10220MF_0404488 .
?targetMotifMatchRegionMatch95 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0404496 .
?targetMotifMatchRegionMatchBeginMF_0404496 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0404489 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0404497 edam:has_input signature:MF_04044 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10220MF_0404486, 1, (STRLEN(?templateMotifCigarP10220MF_0404486) - STRLEN(REPLACE(?templateMotifCigarP10220MF_0404486, CONCAT('^(?:-*[^-]){', STR(((197 - ?templateMotifSequenceMatchBeginPositionP1022087) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10220MF_0404488, 1, (STRLEN(?targetMotifMatchCigarP10220MF_0404488) - STRLEN(REPLACE(?targetMotifMatchCigarP10220MF_0404488, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10220MF_0404488, 1, (STRLEN(?targetMotifMatchCigarP10220MF_0404488) - STRLEN(REPLACE(?targetMotifMatchCigarP10220MF_0404488, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0404489) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04044a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP10220106 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP10220108 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP10220MF_04044101 .
?templateMotifSequenceMatchRegionP10220106 faldo:begin ?templateMotifSequenceMatchBeginP10220107 .
?templateMotifSequenceMatchBeginP10220107 faldo:position ?templateMotifSequenceMatchBeginPositionP10220102 ;
faldo:reference isoform:P10220-1 .
?templateMotifSequenceProfileAlignmentOperationP10220108 edam:has_input signature:MF_04044 ;
rdf:type edam:operation_0300 .
?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04044112 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP10220MF_04044103 .
?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04044111 .
?targetMotifMatchRegionMatchBeginMF_04044111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04044104 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04044112 edam:has_input signature:MF_04044 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP10220MF_04044101, 1, (STRLEN(?templateMotifCigarP10220MF_04044101) - STRLEN(REPLACE(?templateMotifCigarP10220MF_04044101, CONCAT('^(?:-*[^-]){', STR(((199 - ?templateMotifSequenceMatchBeginPositionP10220102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP10220MF_04044103, 1, (STRLEN(?targetMotifMatchCigarP10220MF_04044103) - STRLEN(REPLACE(?targetMotifMatchCigarP10220MF_04044103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP10220MF_04044103, 1, (STRLEN(?targetMotifMatchCigarP10220MF_04044103) - STRLEN(REPLACE(?targetMotifMatchCigarP10220MF_04044103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_04044104) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_04044a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
}
"xsd:string |
