| http://purl.uniprot.org/unirules/MF_04092#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:946864 up:source unirule:MF_04092 .
_:946865 up:source unirule:MF_04092 .
_:946866 up:source unirule:MF_04092 .
_:946867 up:source unirule:MF_04092 .
_:946868 up:source unirule:MF_04092 .
_:946869 up:source unirule:MF_04092 .
_:946870 up:source unirule:MF_04092 .
_:946871 up:source unirule:MF_04092 .
_:946872 up:source unirule:MF_04092 .
_:946873 up:source unirule:MF_04092 .
_:946874 up:source unirule:MF_04092 .
_:946875 up:source unirule:MF_04092 .
_:946876 up:source unirule:MF_04092 .
_:946877 up:source unirule:MF_04092 .
_:946878 up:source unirule:MF_04092 .
_:946879 up:source unirule:MF_04092 .
_:946880 up:source unirule:MF_04092 .
_:946881 up:source unirule:MF_04092 .
_:946882 up:source unirule:MF_04092 .
_:946883 up:source unirule:MF_04092 .
_:946884 up:source unirule:MF_04092 .
_:946885 up:source unirule:MF_04092 .
_:946886 up:source unirule:MF_04092 .
_:946887 up:source unirule:MF_04092 .
_:946888 up:source unirule:MF_04092 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ;
up:classifiedWith GO:0000166 ,
GO:0000287 ,
GO:0003723 ,
GO:0016887 ,
GO:0019079 ,
GO:0030430 ,
keyword:1035 ,
keyword:325 ,
keyword:547 ,
keyword:694 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Non-structural protein 5' ;
up:shortName 'NSP5' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'NS26' ;
rdf:type up:Structured_Name .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Plays an essential role in the viral genome replication. Participates, together with NSP2, in the formation of viral factories (viroplasms) which are large inclusions in the host cytoplasm where replication intermediates are assembled and viral RNA replication takes place. Orchestrates the recruitment of viroplasmic proteins such as capsid proteins to these factories. Participates in the selective exclusion of host proteins from stress granules (SG) and P bodies (PB). Participates also in the sequestration of these remodeled organelles in viral factories.' .
?annotation3 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Found in spherical cytoplasmic structures, called virus factories, that appear early after infection and are the site of viral replication and packaging' .
?annotation3li4 up:cellularComponent .
?annotation5 a up:PTM_Annotation ;
rdfs:comment 'O-glycosylated.' .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the rotavirus NSP5 family.' .
?case7 up:classifiedWith keyword:460 ,
keyword:479 .
?case8 up:classifiedWith keyword:597 .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:18420 .
?pfs17 up:annotation ?annotation18 ,
?annotation23 ,
?annotation28 ,
?annotation33 ,
?annotation38 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host CK1' .
?pfsb19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'Phosphoserine; by host' .
?pfsb39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
_:946889 a rdf:Statement ;
up:attribution _:946864 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:946890 a rdf:Statement ;
up:attribution _:946865 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:946891 a rdf:Statement ;
up:attribution _:946866 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:946892 a rdf:Statement ;
up:attribution _:946867 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:946893 a rdf:Statement ;
up:attribution _:946868 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:946894 a rdf:Statement ;
up:attribution _:946869 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:946895 a rdf:Statement ;
up:attribution _:946870 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:325 .
_:946896 a rdf:Statement ;
up:attribution _:946871 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1035 .
_:946897 a rdf:Statement ;
up:attribution _:946872 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:946898 a rdf:Statement ;
up:attribution _:946873 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:946899 a rdf:Statement ;
up:attribution _:946874 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030430 .
_:946900 a rdf:Statement ;
up:attribution _:946875 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016887 .
_:946901 a rdf:Statement ;
up:attribution _:946876 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:946902 a rdf:Statement ;
up:attribution _:946877 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000166 .
_:946903 a rdf:Statement ;
up:attribution _:946878 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003723 .
_:946904 a rdf:Statement ;
up:attribution _:946879 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019079 .
_:946905 a rdf:Statement ;
up:attribution _:946880 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:946906 a rdf:Statement ;
up:attribution _:946881 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:946907 a rdf:Statement ;
up:attribution _:946882 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:597 .
_:946908 a rdf:Statement ;
up:source unirule:MF_04092 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:946909 a rdf:Statement ;
up:attribution _:946883 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:946910 a rdf:Statement ;
up:source unirule:MF_04092 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:946911 a rdf:Statement ;
up:attribution _:946884 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:946912 a rdf:Statement ;
up:source unirule:MF_04092 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:946913 a rdf:Statement ;
up:attribution _:946885 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:946914 a rdf:Statement ;
up:source unirule:MF_04092 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:946915 a rdf:Statement ;
up:attribution _:946886 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:946916 a rdf:Statement ;
up:source unirule:MF_04092 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:946917 a rdf:Statement ;
up:attribution _:946887 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:946918 a rdf:Statement ;
up:source unirule:MF_04092 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:946919 a rdf:Statement ;
up:attribution _:946888 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04092
#Rule MF_04092 Created by:? on:2018-03-02 Modified by:Chantal Hulo on:2023-08-29
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04092 .
?thisOrganism rdfs:subClassOf+ taxon:10912 .
BIND(URI(CONCAT(STR(?this), '#MF_04092a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04092a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_04092a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04092a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04092a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04092a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch47 faldo:location ?templateMotifSequenceMatchRegionA2T3Q948 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3Q950 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3Q9MF_0409243 .
?templateMotifSequenceMatchRegionA2T3Q948 faldo:begin ?templateMotifSequenceMatchBeginA2T3Q949 .
?templateMotifSequenceMatchBeginA2T3Q949 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3Q944 ;
faldo:reference isoform:A2T3Q9-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3Q950 edam:has_input signature:MF_04092 ;
rdf:type edam:operation_0300 .
?targetMotifMatch51 faldo:location ?targetMotifMatchRegionMatch52 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0409254 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3Q9MF_0409245 .
?targetMotifMatchRegionMatch52 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0409253 .
?targetMotifMatchRegionMatchBeginMF_0409253 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0409246 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0409254 edam:has_input signature:MF_04092 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagMetal) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3Q9MF_0409243, 1, (STRLEN(?templateMotifCigarA2T3Q9MF_0409243) - STRLEN(REPLACE(?templateMotifCigarA2T3Q9MF_0409243, CONCAT('^(?:-*[^-]){', STR(((92 - ?templateMotifSequenceMatchBeginPositionA2T3Q944) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3Q9MF_0409245, 1, (STRLEN(?targetMotifMatchCigarA2T3Q9MF_0409245) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3Q9MF_0409245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3Q9MF_0409245, 1, (STRLEN(?targetMotifMatchCigarA2T3Q9MF_0409245) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3Q9MF_0409245, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0409246) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04092a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionA2T3Q963 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationA2T3Q965 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarA2T3Q9MF_0409258 .
?templateMotifSequenceMatchRegionA2T3Q963 faldo:begin ?templateMotifSequenceMatchBeginA2T3Q964 .
?templateMotifSequenceMatchBeginA2T3Q964 faldo:position ?templateMotifSequenceMatchBeginPositionA2T3Q959 ;
faldo:reference isoform:A2T3Q9-1 .
?templateMotifSequenceProfileAlignmentOperationA2T3Q965 edam:has_input signature:MF_04092 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0409269 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarA2T3Q9MF_0409260 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0409268 .
?targetMotifMatchRegionMatchBeginMF_0409268 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0409261 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0409269 edam:has_input signature:MF_04092 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3Q9MF_0409258, 1, (STRLEN(?templateMotifCigarA2T3Q9MF_0409258) - STRLEN(REPLACE(?templateMotifCigarA2T3Q9MF_0409258, CONCAT('^(?:-*[^-]){', STR(((67 - ?templateMotifSequenceMatchBeginPositionA2T3Q959) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3Q9MF_0409260, 1, (STRLEN(?targetMotifMatchCigarA2T3Q9MF_0409260) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3Q9MF_0409260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3Q9MF_0409260, 1, (STRLEN(?targetMotifMatchCigarA2T3Q9MF_0409260) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3Q9MF_0409260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0409261) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs2t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'S')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3Q9MF_0409258, 1, (STRLEN(?templateMotifCigarA2T3Q9MF_0409258) - STRLEN(REPLACE(?templateMotifCigarA2T3Q9MF_0409258, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionA2T3Q959) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3Q9MF_0409260, 1, (STRLEN(?targetMotifMatchCigarA2T3Q9MF_0409260) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3Q9MF_0409260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3Q9MF_0409260, 1, (STRLEN(?targetMotifMatchCigarA2T3Q9MF_0409260) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3Q9MF_0409260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0409261) - 1) AS ?thisPositionOn26) .
BIND(?thisPositionOn26 AS ?thisPositionOn27) .
BIND(?this AS ?pfs2t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'S')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3Q9MF_0409258, 1, (STRLEN(?templateMotifCigarA2T3Q9MF_0409258) - STRLEN(REPLACE(?templateMotifCigarA2T3Q9MF_0409258, CONCAT('^(?:-*[^-]){', STR(((156 - ?templateMotifSequenceMatchBeginPositionA2T3Q959) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3Q9MF_0409260, 1, (STRLEN(?targetMotifMatchCigarA2T3Q9MF_0409260) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3Q9MF_0409260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3Q9MF_0409260, 1, (STRLEN(?targetMotifMatchCigarA2T3Q9MF_0409260) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3Q9MF_0409260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0409261) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs2t78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse30) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'S')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3Q9MF_0409258, 1, (STRLEN(?templateMotifCigarA2T3Q9MF_0409258) - STRLEN(REPLACE(?templateMotifCigarA2T3Q9MF_0409258, CONCAT('^(?:-*[^-]){', STR(((164 - ?templateMotifSequenceMatchBeginPositionA2T3Q959) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3Q9MF_0409260, 1, (STRLEN(?targetMotifMatchCigarA2T3Q9MF_0409260) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3Q9MF_0409260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3Q9MF_0409260, 1, (STRLEN(?targetMotifMatchCigarA2T3Q9MF_0409260) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3Q9MF_0409260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0409261) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs2t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'S')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarA2T3Q9MF_0409258, 1, (STRLEN(?templateMotifCigarA2T3Q9MF_0409258) - STRLEN(REPLACE(?templateMotifCigarA2T3Q9MF_0409258, CONCAT('^(?:-*[^-]){', STR(((166 - ?templateMotifSequenceMatchBeginPositionA2T3Q959) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarA2T3Q9MF_0409260, 1, (STRLEN(?targetMotifMatchCigarA2T3Q9MF_0409260) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3Q9MF_0409260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarA2T3Q9MF_0409260, 1, (STRLEN(?targetMotifMatchCigarA2T3Q9MF_0409260) - STRLEN(REPLACE(?targetMotifMatchCigarA2T3Q9MF_0409260, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0409261) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs2t84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'S')) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag85) .
}
BIND(IF(BOUND(?tagMetal), ?caseWithTag85, ?UNBOUND_VARIABLE) AS ?case7) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag86) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag86, ?UNBOUND_VARIABLE) AS ?case8) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag87) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag87, ?UNBOUND_VARIABLE) AS ?case9) .
}
"xsd:string |
