| http://purl.uniprot.org/unirules/MF_04129#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:963668 up:source unirule:MF_04129 .
_:963669 up:source unirule:MF_04129 .
_:963670 up:source unirule:MF_04129 .
_:963671 up:source unirule:MF_04129 .
_:963672 up:source unirule:MF_04129 .
_:963673 up:source unirule:MF_04129 .
_:963674 up:source unirule:MF_04129 .
_:963675 up:source unirule:MF_04129 .
_:963676 up:source unirule:MF_04129 .
_:963677 up:source unirule:MF_04129 .
_:963678 up:source unirule:MF_04129 .
_:963679 up:source unirule:MF_04129 .
_:963680 up:source unirule:MF_04129 .
_:963681 up:source unirule:MF_04129 .
_:963682 up:source unirule:MF_04129 .
_:963683 up:source unirule:MF_04129 .
_:963684 up:source unirule:MF_04129 .
_:963685 up:source unirule:MF_04129 .
_:963686 up:source unirule:MF_04129 .
_:963687 up:source unirule:MF_04129 .
_:963688 up:source unirule:MF_04129 .
_:963689 up:source unirule:MF_04129 .
_:963690 up:source unirule:MF_04129 .
_:963691 up:source unirule:MF_04129 .
_:963692 up:source unirule:MF_04129 .
?this up:annotation ?annotation1 ,
?annotation2 ,
?annotation4 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0005198 ,
GO:0019031 ,
GO:0019064 ,
GO:0039626 ,
GO:0046789 ,
GO:0046872 ,
keyword:106 ,
keyword:1154 ,
keyword:167 ,
keyword:479 ,
keyword:832 ,
keyword:862 ,
keyword:946 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Intermediate capsid protein VP6' ;
rdf:type up:Structured_Name .
?annotation1 a up:Function_Annotation ;
rdfs:comment 'Intermediate capsid protein that self assembles to form an icosahedral capsid with a T=13 symmetry, which consists of 230 trimers of VP6, with channels at each of its five-fold vertices. This capsid constitutes the middle concentric layer of the viral mature particle. The innermost VP2 capsid and the intermediate VP6 capsid remain intact following cell entry to protect the dsRNA from degradation and to prevent unfavorable antiviral responses in the host cell during all the replication cycle of the virus. Nascent transcripts are transcribed within the structural confines of this double-layered particle (DLP) and are extruded through the channels at the five-fold axes. VP6 is required for the transcription activity of the DLP.' .
?annotation2 a up:Subcellular_Location_Annotation ;
rdfs:comment 'Component of the intermediate capsid. Also found in spherical cytoplasmic structures, called virus factories, that appear early after infection and are the site of viral replication and packaging' .
?annotation2li3 up:cellularComponent .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Homotrimer. Interacts with the inner capsid protein VP2. Interacts with the outer capsid glycoprotein VP7. Interacts with the outer capsid protein VP5*.' .
?annotation5 a up:PTM_Annotation ;
rdfs:comment 'The N-terminus is blocked.' .
?annotation6 a up:PTM_Annotation ;
rdfs:comment 'Sumoylated with SUMO1 and SUMO2. Sumoylation of viral proteins seems to have a positive role on viral replication.' .
?annotation7 a up:Annotation ;
rdfs:comment 'The VP6 trimer contains a zinc ion located at the center of the molecule. The zinc ion is not essential for either trimerization or transcription activity of the DLP. Zinc-depleted VP6 has an increased sensitivity to proteases.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the rotavirus VP6 family.' .
?pfs9 up:annotation ?annotation10 .
?annotation10 faldo:begin ?pfsb11 ;
faldo:end ?pfse12 ;
up:ligand ?ligand13 ;
rdf:type up:Binding_Site_Annotation .
?pfsb11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?ligand13 rdfs:subClassOf chebi:29105 .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:29108 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29108 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Interaction with the inner capsid protein VP2' .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
_:963693 a rdf:Statement ;
up:attribution _:963668 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:963694 a rdf:Statement ;
up:attribution _:963669 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:963695 a rdf:Statement ;
up:attribution _:963670 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:963696 a rdf:Statement ;
up:attribution _:963671 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:963697 a rdf:Statement ;
up:attribution _:963672 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:963698 a rdf:Statement ;
up:attribution _:963673 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:963699 a rdf:Statement ;
up:attribution _:963674 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:963700 a rdf:Statement ;
up:attribution _:963675 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:963701 a rdf:Statement ;
up:attribution _:963676 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:106 .
_:963702 a rdf:Statement ;
up:attribution _:963677 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:963703 a rdf:Statement ;
up:attribution _:963678 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:963704 a rdf:Statement ;
up:attribution _:963679 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:832 .
_:963705 a rdf:Statement ;
up:attribution _:963680 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:167 .
_:963706 a rdf:Statement ;
up:attribution _:963681 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1154 .
_:963707 a rdf:Statement ;
up:attribution _:963682 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:963708 a rdf:Statement ;
up:attribution _:963683 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019031 .
_:963709 a rdf:Statement ;
up:attribution _:963684 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0039626 .
_:963710 a rdf:Statement ;
up:attribution _:963685 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046789 .
_:963711 a rdf:Statement ;
up:attribution _:963686 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005198 .
_:963712 a rdf:Statement ;
up:attribution _:963687 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019064 .
_:963713 a rdf:Statement ;
up:attribution _:963688 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046872 .
_:963714 a rdf:Statement ;
up:source unirule:MF_04129 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:963715 a rdf:Statement ;
up:attribution _:963689 ;
rdf:subject ?pfs9 ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:963716 a rdf:Statement ;
up:source unirule:MF_04129 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:963717 a rdf:Statement ;
up:attribution _:963690 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:963718 a rdf:Statement ;
up:source unirule:MF_04129 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:963719 a rdf:Statement ;
up:attribution _:963691 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:963720 a rdf:Statement ;
up:source unirule:MF_04129 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:963721 a rdf:Statement ;
up:attribution _:963692 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04129
#Rule MF_04129 Created by:? on:2018-03-28 Modified by:Edouard de Castro on:2022-11-19
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04129 .
?thisOrganism rdfs:subClassOf+ taxon:10912 .
BIND(URI(CONCAT(STR(?this), '#MF_04129a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_04129a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_04129a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_04129a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_04129a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_04129a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_04129a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_04129a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch40 faldo:location ?templateMotifSequenceMatchRegionP0450941 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0450943 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04509MF_0412936 .
?templateMotifSequenceMatchRegionP0450941 faldo:begin ?templateMotifSequenceMatchBeginP0450942 .
?templateMotifSequenceMatchBeginP0450942 faldo:position ?templateMotifSequenceMatchBeginPositionP0450937 ;
faldo:reference isoform:P04509-1 .
?templateMotifSequenceProfileAlignmentOperationP0450943 edam:has_input signature:MF_04129 ;
rdf:type edam:operation_0300 .
?targetMotifMatch44 faldo:location ?targetMotifMatchRegionMatch45 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0412947 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04509MF_0412938 .
?targetMotifMatchRegionMatch45 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0412946 .
?targetMotifMatchRegionMatchBeginMF_0412946 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0412939 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0412947 edam:has_input signature:MF_04129 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04509MF_0412936, 1, (STRLEN(?templateMotifCigarP04509MF_0412936) - STRLEN(REPLACE(?templateMotifCigarP04509MF_0412936, CONCAT('^(?:-*[^-]){', STR(((153 - ?templateMotifSequenceMatchBeginPositionP0450937) + 1)), '}'), '')))), '[a-z]', '')) AS ?step148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04509MF_0412938, 1, (STRLEN(?targetMotifMatchCigarP04509MF_0412938) - STRLEN(REPLACE(?targetMotifMatchCigarP04509MF_0412938, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04509MF_0412938, 1, (STRLEN(?targetMotifMatchCigarP04509MF_0412938) - STRLEN(REPLACE(?targetMotifMatchCigarP04509MF_0412938, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step148), '}'), '')))), '[^-]', ''))) AS ?step249) .
BIND(((?step249 + ?targetMotifMatchRegionMatchBeginPositionMF_0412939) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb11) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse12) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_04129a10')) AS ?annotation10) .
BIND(?this AS ?pfs9) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch55 faldo:location ?templateMotifSequenceMatchRegionP0450956 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0450958 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04509MF_0412951 .
?templateMotifSequenceMatchRegionP0450956 faldo:begin ?templateMotifSequenceMatchBeginP0450957 .
?templateMotifSequenceMatchBeginP0450957 faldo:position ?templateMotifSequenceMatchBeginPositionP0450952 ;
faldo:reference isoform:P04509-1 .
?templateMotifSequenceProfileAlignmentOperationP0450958 edam:has_input signature:MF_04129 ;
rdf:type edam:operation_0300 .
?targetMotifMatch59 faldo:location ?targetMotifMatchRegionMatch60 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0412962 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04509MF_0412953 .
?targetMotifMatchRegionMatch60 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0412961 .
?targetMotifMatchRegionMatchBeginMF_0412961 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0412954 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0412962 edam:has_input signature:MF_04129 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04509MF_0412951, 1, (STRLEN(?templateMotifCigarP04509MF_0412951) - STRLEN(REPLACE(?templateMotifCigarP04509MF_0412951, CONCAT('^(?:-*[^-]){', STR(((266 - ?templateMotifSequenceMatchBeginPositionP0450952) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04509MF_0412953, 1, (STRLEN(?targetMotifMatchCigarP04509MF_0412953) - STRLEN(REPLACE(?targetMotifMatchCigarP04509MF_0412953, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04509MF_0412953, 1, (STRLEN(?targetMotifMatchCigarP04509MF_0412953) - STRLEN(REPLACE(?targetMotifMatchCigarP04509MF_0412953, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0412954) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_04129a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionP0450971 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0450973 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04509MF_0412966 .
?templateMotifSequenceMatchRegionP0450971 faldo:begin ?templateMotifSequenceMatchBeginP0450972 .
?templateMotifSequenceMatchBeginP0450972 faldo:position ?templateMotifSequenceMatchBeginPositionP0450967 ;
faldo:reference isoform:P04509-1 .
?templateMotifSequenceProfileAlignmentOperationP0450973 edam:has_input signature:MF_04129 ;
rdf:type edam:operation_0300 .
?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0412977 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04509MF_0412968 .
?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0412976 .
?targetMotifMatchRegionMatchBeginMF_0412976 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0412969 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0412977 edam:has_input signature:MF_04129 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04509MF_0412966, 1, (STRLEN(?templateMotifCigarP04509MF_0412966) - STRLEN(REPLACE(?templateMotifCigarP04509MF_0412966, CONCAT('^(?:-*[^-]){', STR(((286 - ?templateMotifSequenceMatchBeginPositionP0450967) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04509MF_0412968, 1, (STRLEN(?targetMotifMatchCigarP04509MF_0412968) - STRLEN(REPLACE(?targetMotifMatchCigarP04509MF_0412968, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04509MF_0412968, 1, (STRLEN(?targetMotifMatchCigarP04509MF_0412968) - STRLEN(REPLACE(?targetMotifMatchCigarP04509MF_0412968, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0412969) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_04129a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionP0450986 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0450988 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP04509MF_0412981 .
?templateMotifSequenceMatchRegionP0450986 faldo:begin ?templateMotifSequenceMatchBeginP0450987 .
?templateMotifSequenceMatchBeginP0450987 faldo:position ?templateMotifSequenceMatchBeginPositionP0450982 ;
faldo:reference isoform:P04509-1 .
?templateMotifSequenceProfileAlignmentOperationP0450988 edam:has_input signature:MF_04129 ;
rdf:type edam:operation_0300 .
?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0412992 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP04509MF_0412983 .
?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0412991 .
?targetMotifMatchRegionMatchBeginMF_0412991 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0412984 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0412992 edam:has_input signature:MF_04129 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04509MF_0412981, 1, (STRLEN(?templateMotifCigarP04509MF_0412981) - STRLEN(REPLACE(?templateMotifCigarP04509MF_0412981, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionP0450982) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04509MF_0412983, 1, (STRLEN(?targetMotifMatchCigarP04509MF_0412983) - STRLEN(REPLACE(?targetMotifMatchCigarP04509MF_0412983, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04509MF_0412983, 1, (STRLEN(?targetMotifMatchCigarP04509MF_0412983) - STRLEN(REPLACE(?targetMotifMatchCigarP04509MF_0412983, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0412984) - 1) AS ?thisPositionOn34) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP04509MF_0412981, 1, (STRLEN(?templateMotifCigarP04509MF_0412981) - STRLEN(REPLACE(?templateMotifCigarP04509MF_0412981, CONCAT('^(?:-*[^-]){', STR(((73 - ?templateMotifSequenceMatchBeginPositionP0450982) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP04509MF_0412983, 1, (STRLEN(?targetMotifMatchCigarP04509MF_0412983) - STRLEN(REPLACE(?targetMotifMatchCigarP04509MF_0412983, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP04509MF_0412983, 1, (STRLEN(?targetMotifMatchCigarP04509MF_0412983) - STRLEN(REPLACE(?targetMotifMatchCigarP04509MF_0412983, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0412984) - 1) AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((BOUND(?thisPositionOn34) && BOUND(?thisPositionOn35))) .
BIND(URI(CONCAT(STR(?this), '#MF_04129a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
}
"xsd:string |
