| http://purl.uniprot.org/unirules/MF_04139#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:967994 up:source unirule:MF_04139 .
_:967995 up:source unirule:MF_04139 .
_:967996 up:source unirule:MF_04139 .
_:967997 up:source unirule:MF_04139 .
_:967998 up:source unirule:MF_04139 .
_:967999 up:source unirule:MF_04139 .
_:968000 up:source unirule:MF_04139 .
_:968001 up:source unirule:MF_04139 .
_:968002 up:source unirule:MF_04139 .
_:968003 up:source unirule:MF_04139 .
_:968004 up:source unirule:MF_04139 .
_:968005 up:fullName 'Mature NAD(+)--arginine ADP-ribosyltransferase' ;
rdf:type up:Structured_Name .
_:968006 up:source unirule:MF_04139 .
_:968007 up:source unirule:MF_04139 .
_:968008 up:source unirule:MF_04139 .
_:968009 up:source unirule:MF_04139 .
_:968010 up:source unirule:MF_04139 .
_:968011 up:source unirule:MF_04139 .
_:968012 up:source unirule:MF_04139 .
_:968013 up:source unirule:MF_04139 .
_:968014 up:source unirule:MF_04139 .
?this up:annotation ?annotation0 ,
?annotation1 ,
?annotation3 ;
up:classifiedWith GO:0044423 ,
GO:0046782 ,
GO:0106274 ,
keyword:328 ,
keyword:520 ,
keyword:548 ,
keyword:808 ,
keyword:946 ;
up:component ?namedpart4 .
?annotation0 a up:Function_Annotation ;
rdfs:comment "ADP-ribosyltransferase that efficiently ADP-ribosylates one of the two alpha subunits of host RNA polymerase RPOA on an arginine located in the C-terminal region. ADP-ribosylation of RPOA alpha subunit enhances the transcription of viral early genes. Also ribosylates RPOA subunits beta, beta' and sigma 70 and performs an autoribosylation reaction." .
?annotation1 a up:Subcellular_Location_Annotation ;
rdfs:comment 'About 25-50 copies per virion. This protein is injected into the bacterial cell along with the viral DNA' .
?annotation1li2 up:cellularComponent .
?annotation3 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the Tevenvirinae NAD(+)--arginine ADP-ribosyltransferase family.' .
?namedpart4 up:recommendedName _:968005 .
?case6 up:recommendedName ?name7 .
?name7 up:ecName '2.4.2.31' ;
up:fullName 'NAD(+)--arginine ADP-ribosyltransferase' ;
rdf:type up:Structured_Name .
?case8 up:recommendedName ?name9 .
?name9 up:ecName '2.4.2.31' ;
up:fullName 'NAD(+)--arginine ADP-ribosyltransferase' ;
rdf:type up:Structured_Name .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage' .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Active_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Cleavage' .
?pfsb24 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfs28 up:annotation ?annotation29 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'NAD(+)--arginine ADP-ribosyltransferase' .
?pfsb30 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
rdf:type up:Chain_Annotation ;
rdfs:comment 'Mature NAD(+)--arginine ADP-ribosyltransferase' .
?pfsb36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?sam40 up:classifiedWith keyword:175 .
?coiledCoil41 faldo:begin ?coiledCoilb42 ;
faldo:end ?coiledCoile43 .
?coiledCoilb42 faldo:position ?coiledCoilbp44 .
?coiledCoile43 faldo:position ?coiledCoilep45 .
?keyword46 up:range ?coiledCoil41 .
_:968015 a rdf:Statement ;
up:attribution _:967994 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:968016 a rdf:Statement ;
up:attribution _:967995 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:968017 a rdf:Statement ;
up:attribution _:967996 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:968018 a rdf:Statement ;
up:attribution _:967997 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:328 .
_:968019 a rdf:Statement ;
up:attribution _:967998 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:968020 a rdf:Statement ;
up:attribution _:967999 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:548 .
_:968021 a rdf:Statement ;
up:attribution _:968000 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:968022 a rdf:Statement ;
up:attribution _:968001 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:946 .
_:968023 a rdf:Statement ;
up:attribution _:968002 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0044423 .
_:968024 a rdf:Statement ;
up:attribution _:968003 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0106274 .
_:968025 a rdf:Statement ;
up:attribution _:968004 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0046782 .
_:968026 a rdf:Statement ;
up:attribution _:968006 ;
rdf:subject ?this ;
rdf:predicate up:component ;
rdf:object ?namedpart4 .
_:968027 a rdf:Statement ;
up:attribution _:968007 ;
rdf:subject ?case6 ;
rdf:predicate up:recommendedName ;
rdf:object ?name7 .
_:968028 a rdf:Statement ;
up:attribution _:968008 ;
rdf:subject ?case8 ;
rdf:predicate up:recommendedName ;
rdf:object ?name9 .
_:968029 a rdf:Statement ;
up:source unirule:MF_04139 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:968030 a rdf:Statement ;
up:attribution _:968009 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:968031 a rdf:Statement ;
up:source unirule:MF_04139 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:968032 a rdf:Statement ;
up:attribution _:968010 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:968033 a rdf:Statement ;
up:source unirule:MF_04139 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:968034 a rdf:Statement ;
up:attribution _:968011 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:968035 a rdf:Statement ;
up:source unirule:MF_04139 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:968036 a rdf:Statement ;
up:attribution _:968012 ;
rdf:subject ?pfs28 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:968037 a rdf:Statement ;
up:source unirule:MF_04139 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:968038 a rdf:Statement ;
up:attribution _:968013 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:968039 a rdf:Statement ;
up:attribution _:968014 ;
rdf:subject ?sam40 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:175 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04139
#Rule MF_04139 Created by:? on:2019-05-21 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04139 .
?thisOrganism rdfs:subClassOf+ taxon:10239 .
BIND(URI(CONCAT(STR(?this), '#MF_04139a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_04139a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_04139a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_04139a4')) AS ?namedpart4) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch51 faldo:location ?templateMotifSequenceMatchRegionP1272652 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1272654 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12726MF_0413947 .
?templateMotifSequenceMatchRegionP1272652 faldo:begin ?templateMotifSequenceMatchBeginP1272653 .
?templateMotifSequenceMatchBeginP1272653 faldo:position ?templateMotifSequenceMatchBeginPositionP1272648 ;
faldo:reference isoform:P12726-1 .
?templateMotifSequenceProfileAlignmentOperationP1272654 edam:has_input signature:MF_04139 ;
rdf:type edam:operation_0300 .
?targetMotifMatch55 faldo:location ?targetMotifMatchRegionMatch56 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0413958 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12726MF_0413949 .
?targetMotifMatchRegionMatch56 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0413957 .
?targetMotifMatchRegionMatchBeginMF_0413957 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0413950 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0413958 edam:has_input signature:MF_04139 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagcleavage1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12726MF_0413947, 1, (STRLEN(?templateMotifCigarP12726MF_0413947) - STRLEN(REPLACE(?templateMotifCigarP12726MF_0413947, CONCAT('^(?:-*[^-]){', STR(((6 - ?templateMotifSequenceMatchBeginPositionP1272648) + 1)), '}'), '')))), '[a-z]', '')) AS ?step159) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12726MF_0413949, 1, (STRLEN(?targetMotifMatchCigarP12726MF_0413949) - STRLEN(REPLACE(?targetMotifMatchCigarP12726MF_0413949, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12726MF_0413949, 1, (STRLEN(?targetMotifMatchCigarP12726MF_0413949) - STRLEN(REPLACE(?targetMotifMatchCigarP12726MF_0413949, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step159), '}'), '')))), '[^-]', ''))) AS ?step260) .
BIND(((?step260 + ?targetMotifMatchRegionMatchBeginPositionMF_0413950) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12726MF_0413947, 1, (STRLEN(?templateMotifCigarP12726MF_0413947) - STRLEN(REPLACE(?templateMotifCigarP12726MF_0413947, CONCAT('^(?:-*[^-]){', STR(((7 - ?templateMotifSequenceMatchBeginPositionP1272648) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12726MF_0413949, 1, (STRLEN(?targetMotifMatchCigarP12726MF_0413949) - STRLEN(REPLACE(?targetMotifMatchCigarP12726MF_0413949, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12726MF_0413949, 1, (STRLEN(?targetMotifMatchCigarP12726MF_0413949) - STRLEN(REPLACE(?targetMotifMatchCigarP12726MF_0413949, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) .
BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0413950) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER (REGEX('E[LVS]', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_04139a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch68 faldo:location ?templateMotifSequenceMatchRegionP1272669 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1272671 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12726MF_0413964 .
?templateMotifSequenceMatchRegionP1272669 faldo:begin ?templateMotifSequenceMatchBeginP1272670 .
?templateMotifSequenceMatchBeginP1272670 faldo:position ?templateMotifSequenceMatchBeginPositionP1272665 ;
faldo:reference isoform:P12726-1 .
?templateMotifSequenceProfileAlignmentOperationP1272671 edam:has_input signature:MF_04139 ;
rdf:type edam:operation_0300 .
?targetMotifMatch72 faldo:location ?targetMotifMatchRegionMatch73 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0413975 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12726MF_0413966 .
?targetMotifMatchRegionMatch73 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0413974 .
?targetMotifMatchRegionMatchBeginMF_0413974 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0413967 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0413975 edam:has_input signature:MF_04139 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagAct_site) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12726MF_0413964, 1, (STRLEN(?templateMotifCigarP12726MF_0413964) - STRLEN(REPLACE(?templateMotifCigarP12726MF_0413964, CONCAT('^(?:-*[^-]){', STR(((576 - ?templateMotifSequenceMatchBeginPositionP1272665) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12726MF_0413966, 1, (STRLEN(?targetMotifMatchCigarP12726MF_0413966) - STRLEN(REPLACE(?targetMotifMatchCigarP12726MF_0413966, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12726MF_0413966, 1, (STRLEN(?targetMotifMatchCigarP12726MF_0413966) - STRLEN(REPLACE(?targetMotifMatchCigarP12726MF_0413966, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0413967) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs2t78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_04139a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionP1272684 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP1272686 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12726MF_0413979 .
?templateMotifSequenceMatchRegionP1272684 faldo:begin ?templateMotifSequenceMatchBeginP1272685 .
?templateMotifSequenceMatchBeginP1272685 faldo:position ?templateMotifSequenceMatchBeginPositionP1272680 ;
faldo:reference isoform:P12726-1 .
?templateMotifSequenceProfileAlignmentOperationP1272686 edam:has_input signature:MF_04139 ;
rdf:type edam:operation_0300 .
?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0413990 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12726MF_0413981 .
?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0413989 .
?targetMotifMatchRegionMatchBeginMF_0413989 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0413982 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0413990 edam:has_input signature:MF_04139 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagcleavage2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12726MF_0413979, 1, (STRLEN(?templateMotifCigarP12726MF_0413979) - STRLEN(REPLACE(?templateMotifCigarP12726MF_0413979, CONCAT('^(?:-*[^-]){', STR(((619 - ?templateMotifSequenceMatchBeginPositionP1272680) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12726MF_0413981, 1, (STRLEN(?targetMotifMatchCigarP12726MF_0413981) - STRLEN(REPLACE(?targetMotifMatchCigarP12726MF_0413981, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12726MF_0413981, 1, (STRLEN(?targetMotifMatchCigarP12726MF_0413981) - STRLEN(REPLACE(?targetMotifMatchCigarP12726MF_0413981, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0413982) - 1) AS ?thisPositionOn26) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12726MF_0413979, 1, (STRLEN(?templateMotifCigarP12726MF_0413979) - STRLEN(REPLACE(?templateMotifCigarP12726MF_0413979, CONCAT('^(?:-*[^-]){', STR(((620 - ?templateMotifSequenceMatchBeginPositionP1272680) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12726MF_0413981, 1, (STRLEN(?targetMotifMatchCigarP12726MF_0413981) - STRLEN(REPLACE(?targetMotifMatchCigarP12726MF_0413981, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12726MF_0413981, 1, (STRLEN(?targetMotifMatchCigarP12726MF_0413981) - STRLEN(REPLACE(?targetMotifMatchCigarP12726MF_0413981, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0413982) - 1) AS ?thisPositionOn27) .
BIND(?this AS ?pfs3t95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, (?thisPositionOn27 - ?thisPositionOn26)) = 'ES')) .
BIND(URI(CONCAT(STR(?this), '#MF_04139a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch100 faldo:location ?templateMotifSequenceMatchRegionP12726101 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12726103 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12726MF_0413996 .
?templateMotifSequenceMatchRegionP12726101 faldo:begin ?templateMotifSequenceMatchBeginP12726102 .
?templateMotifSequenceMatchBeginP12726102 faldo:position ?templateMotifSequenceMatchBeginPositionP1272697 ;
faldo:reference isoform:P12726-1 .
?templateMotifSequenceProfileAlignmentOperationP12726103 edam:has_input signature:MF_04139 ;
rdf:type edam:operation_0300 .
?targetMotifMatch104 faldo:location ?targetMotifMatchRegionMatch105 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04139107 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12726MF_0413998 .
?targetMotifMatchRegionMatch105 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04139106 .
?targetMotifMatchRegionMatchBeginMF_04139106 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0413999 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04139107 edam:has_input signature:MF_04139 ;
rdf:type edam:operation_0300 .
BIND(1 AS ?thisPositionOn32) .
BIND(STRLEN(?thisSequenceValue) AS ?thisPositionOn33) .
BIND(?this AS ?pfs4t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse31) .
FILTER ((BOUND(?thisPositionOn32) && BOUND(?thisPositionOn33))) .
BIND(URI(CONCAT(STR(?this), '#MF_04139a29')) AS ?annotation29) .
BIND(?this AS ?pfs28) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP12726114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP12726116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP12726MF_04139109 .
?templateMotifSequenceMatchRegionP12726114 faldo:begin ?templateMotifSequenceMatchBeginP12726115 .
?templateMotifSequenceMatchBeginP12726115 faldo:position ?templateMotifSequenceMatchBeginPositionP12726110 ;
faldo:reference isoform:P12726-1 .
?templateMotifSequenceProfileAlignmentOperationP12726116 edam:has_input signature:MF_04139 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04139120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP12726MF_04139111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04139119 .
?targetMotifMatchRegionMatchBeginMF_04139119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04139112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04139120 edam:has_input signature:MF_04139 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12726MF_04139109, 1, (STRLEN(?templateMotifCigarP12726MF_04139109) - STRLEN(REPLACE(?templateMotifCigarP12726MF_04139109, CONCAT('^(?:-*[^-]){', STR(((7 - ?templateMotifSequenceMatchBeginPositionP12726110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12726MF_04139111, 1, (STRLEN(?targetMotifMatchCigarP12726MF_04139111) - STRLEN(REPLACE(?targetMotifMatchCigarP12726MF_04139111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12726MF_04139111, 1, (STRLEN(?targetMotifMatchCigarP12726MF_04139111) - STRLEN(REPLACE(?targetMotifMatchCigarP12726MF_04139111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_04139112) - 1) AS ?thisPositionOn38) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP12726MF_04139109, 1, (STRLEN(?templateMotifCigarP12726MF_04139109) - STRLEN(REPLACE(?templateMotifCigarP12726MF_04139109, CONCAT('^(?:-*[^-]){', STR(((619 - ?templateMotifSequenceMatchBeginPositionP12726110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP12726MF_04139111, 1, (STRLEN(?targetMotifMatchCigarP12726MF_04139111) - STRLEN(REPLACE(?targetMotifMatchCigarP12726MF_04139111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP12726MF_04139111, 1, (STRLEN(?targetMotifMatchCigarP12726MF_04139111) - STRLEN(REPLACE(?targetMotifMatchCigarP12726MF_04139111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_04139112) - 1) AS ?thisPositionOn39) .
BIND(?this AS ?pfs5t125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse37) .
FILTER ((BOUND(?thisPositionOn38) && BOUND(?thisPositionOn39))) .
BIND(URI(CONCAT(STR(?this), '#MF_04139a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag126) .
}
BIND(IF(BOUND(?tagAct_site), ?caseWithTag126, ?UNBOUND_VARIABLE) AS ?case5) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag127) .
BIND(URI(CONCAT(STR(?this), '#MF_04139a7')) AS ?name7) .
}
BIND(IF((BOUND(?tagcleavage1) || BOUND(?tagcleavage2)), ?caseWithTag127, ?UNBOUND_VARIABLE) AS ?case6) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag128) .
BIND(URI(CONCAT(STR(?this), '#MF_04139a9')) AS ?name9) .
}
BIND(IF((BOUND(?tagcleavage1) || BOUND(?tagcleavage2)), ?caseWithTag128, ?UNBOUND_VARIABLE) AS ?case8) .
OPTIONAL {
?this up:annotation ?samcc129 ;
up:sequence ?thisSequence .
?samcc129 up:range ?samccr130 ;
rdf:type up:Coiled_Coil_Annotation .
?samccr130 faldo:begin ?samccb131 ;
faldo:end ?samcce132 .
?samccb131 faldo:position ?samccbp133 ;
faldo:reference ?thisSequence .
?samcce132 faldo:position ?samccep134 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam40) .
}
BIND(URI(CONCAT(STR(?this), '#MF_04139a46')) AS ?keyword46) .
}
"xsd:string |
