| http://purl.uniprot.org/unirules/MF_04143#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:969743 up:source unirule:MF_04143 .
_:969744 up:source unirule:MF_04143 .
_:969745 up:source unirule:MF_04143 .
_:969746 up:source unirule:MF_04143 .
_:969747 up:source unirule:MF_04143 .
_:969748 up:source unirule:MF_04143 .
_:969749 up:source unirule:MF_04143 .
_:969750 up:source unirule:MF_04143 .
_:969751 up:source unirule:MF_04143 .
_:969752 up:source unirule:MF_04143 .
_:969753 up:source unirule:MF_04143 .
_:969754 up:source unirule:MF_04143 .
_:969755 up:source unirule:MF_04143 .
_:969756 up:source unirule:MF_04143 .
_:969757 up:source unirule:MF_04143 .
_:969758 up:source unirule:MF_04143 .
?this up:annotation ?annotation0 ;
up:classifiedWith GO:0004518 ,
GO:0061507 ,
keyword:378 ,
keyword:540 .
?annotation0 up:activity ?activity1 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity1 up:catalyticActivity .
?case4 up:classifiedWith GO:0052170 .
?pfs6 up:annotation ?annotation7 .
?annotation7 faldo:begin ?pfsb8 ;
faldo:end ?pfse9 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor' .
?pfsb8 faldo:position ?thisPositionOn10 ;
rdf:type faldo:ExactPosition .
?pfse9 faldo:position ?thisPositionOn11 ;
rdf:type faldo:ExactPosition .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Shared with catalytic histidine of dimeric partner' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor; shared with catalytic histidine of dimeric partner' .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Substrate binding' .
?pfsb26 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Substrate binding' .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Substrate binding' .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Substrate binding' .
?pfsb44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfs48 up:annotation ?annotation49 .
?annotation49 faldo:begin ?pfsb50 ;
faldo:end ?pfse51 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Substrate binding' .
?pfsb50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse51 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Substrate binding' .
?pfsb56 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfs60 up:annotation ?annotation61 .
?annotation61 faldo:begin ?pfsb62 ;
faldo:end ?pfse63 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Substrate binding' .
?pfsb62 faldo:position ?thisPositionOn64 ;
rdf:type faldo:ExactPosition .
?pfse63 faldo:position ?thisPositionOn65 ;
rdf:type faldo:ExactPosition .
_:969759 a rdf:Statement ;
up:attribution _:969743 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:969760 a rdf:Statement ;
up:attribution _:969744 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:969761 a rdf:Statement ;
up:attribution _:969745 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:540 .
_:969762 a rdf:Statement ;
up:attribution _:969746 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0061507 .
_:969763 a rdf:Statement ;
up:attribution _:969747 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004518 .
_:969764 a rdf:Statement ;
up:attribution _:969748 ;
rdf:subject ?case4 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0052170 .
_:969765 a rdf:Statement ;
up:source unirule:MF_04143 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:969766 a rdf:Statement ;
up:attribution _:969749 ;
rdf:subject ?pfs6 ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:969767 a rdf:Statement ;
up:source unirule:MF_04143 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:969768 a rdf:Statement ;
up:attribution _:969750 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:969769 a rdf:Statement ;
up:source unirule:MF_04143 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:969770 a rdf:Statement ;
up:attribution _:969751 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:969771 a rdf:Statement ;
up:source unirule:MF_04143 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:969772 a rdf:Statement ;
up:attribution _:969752 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:969773 a rdf:Statement ;
up:source unirule:MF_04143 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:969774 a rdf:Statement ;
up:attribution _:969753 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:969775 a rdf:Statement ;
up:source unirule:MF_04143 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:969776 a rdf:Statement ;
up:attribution _:969754 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:969777 a rdf:Statement ;
up:source unirule:MF_04143 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:969778 a rdf:Statement ;
up:attribution _:969755 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:969779 a rdf:Statement ;
up:source unirule:MF_04143 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:969780 a rdf:Statement ;
up:attribution _:969756 ;
rdf:subject ?pfs48 ;
rdf:predicate up:annotation ;
rdf:object ?annotation49 .
_:969781 a rdf:Statement ;
up:source unirule:MF_04143 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:969782 a rdf:Statement ;
up:attribution _:969757 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:969783 a rdf:Statement ;
up:source unirule:MF_04143 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
_:969784 a rdf:Statement ;
up:attribution _:969758 ;
rdf:subject ?pfs60 ;
rdf:predicate up:annotation ;
rdf:object ?annotation61 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_04143
#Rule MF_04143 Created by:? on:2019-12-12 Modified by:Catherine Rivoire on:2024-03-01
VALUES ?supertaxon66 {taxon:2759 taxon:10239}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_04143 .
?thisOrganism rdfs:subClassOf+ ?supertaxon66 .
BIND(URI(CONCAT(STR(?this), '#MF_04143a0')) AS ?annotation0) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch71 faldo:location ?templateMotifSequenceMatchRegionQ0122572 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0122574 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ01225MF_0414367 .
?templateMotifSequenceMatchRegionQ0122572 faldo:begin ?templateMotifSequenceMatchBeginQ0122573 .
?templateMotifSequenceMatchBeginQ0122573 faldo:position ?templateMotifSequenceMatchBeginPositionQ0122568 ;
faldo:reference isoform:Q01225-1 .
?templateMotifSequenceProfileAlignmentOperationQ0122574 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch75 faldo:location ?targetMotifMatchRegionMatch76 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0414378 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ01225MF_0414369 .
?targetMotifMatchRegionMatch76 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0414377 .
?targetMotifMatchRegionMatchBeginMF_0414377 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0414370 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0414378 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:10239 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ01225MF_0414367, 1, (STRLEN(?templateMotifCigarQ01225MF_0414367) - STRLEN(REPLACE(?templateMotifCigarQ01225MF_0414367, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionQ0122568) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ01225MF_0414369, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_0414369) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_0414369, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ01225MF_0414369, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_0414369) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_0414369, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0414370) - 1) AS ?thisPositionOn10) .
BIND(?thisPositionOn10 AS ?thisPositionOn11) .
BIND(?this AS ?pfs1t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn10))) AS ?pfsb8) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn11))) AS ?pfse9) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn10, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_04143a7')) AS ?annotation7) .
BIND(?this AS ?pfs6) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch86 faldo:location ?templateMotifSequenceMatchRegionQ0122587 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ0122589 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ01225MF_0414382 .
?templateMotifSequenceMatchRegionQ0122587 faldo:begin ?templateMotifSequenceMatchBeginQ0122588 .
?templateMotifSequenceMatchBeginQ0122588 faldo:position ?templateMotifSequenceMatchBeginPositionQ0122583 ;
faldo:reference isoform:Q01225-1 .
?templateMotifSequenceProfileAlignmentOperationQ0122589 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch90 faldo:location ?targetMotifMatchRegionMatch91 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0414393 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ01225MF_0414384 .
?targetMotifMatchRegionMatch91 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0414392 .
?targetMotifMatchRegionMatchBeginMF_0414392 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0414385 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0414393 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:10239 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ01225MF_0414382, 1, (STRLEN(?templateMotifCigarQ01225MF_0414382) - STRLEN(REPLACE(?templateMotifCigarQ01225MF_0414382, CONCAT('^(?:-*[^-]){', STR(((138 - ?templateMotifSequenceMatchBeginPositionQ0122583) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ01225MF_0414384, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_0414384) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_0414384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ01225MF_0414384, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_0414384) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_0414384, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0414385) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_04143a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch101 faldo:location ?templateMotifSequenceMatchRegionQ01225102 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ01225104 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ01225MF_0414397 .
?templateMotifSequenceMatchRegionQ01225102 faldo:begin ?templateMotifSequenceMatchBeginQ01225103 .
?templateMotifSequenceMatchBeginQ01225103 faldo:position ?templateMotifSequenceMatchBeginPositionQ0122598 ;
faldo:reference isoform:Q01225-1 .
?templateMotifSequenceProfileAlignmentOperationQ01225104 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch105 faldo:location ?targetMotifMatchRegionMatch106 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04143108 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ01225MF_0414399 .
?targetMotifMatchRegionMatch106 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04143107 .
?targetMotifMatchRegionMatchBeginMF_04143107 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04143100 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04143108 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:10239 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ01225MF_0414397, 1, (STRLEN(?templateMotifCigarQ01225MF_0414397) - STRLEN(REPLACE(?templateMotifCigarQ01225MF_0414397, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionQ0122598) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ01225MF_0414399, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_0414399) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_0414399, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ01225MF_0414399, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_0414399) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_0414399, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_04143100) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_04143a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionQ01225117 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ01225119 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ01225MF_04143112 .
?templateMotifSequenceMatchRegionQ01225117 faldo:begin ?templateMotifSequenceMatchBeginQ01225118 .
?templateMotifSequenceMatchBeginQ01225118 faldo:position ?templateMotifSequenceMatchBeginPositionQ01225113 ;
faldo:reference isoform:Q01225-1 .
?templateMotifSequenceProfileAlignmentOperationQ01225119 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04143123 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ01225MF_04143114 .
?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04143122 .
?targetMotifMatchRegionMatchBeginMF_04143122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04143115 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04143123 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:10239 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ01225MF_04143112, 1, (STRLEN(?templateMotifCigarQ01225MF_04143112) - STRLEN(REPLACE(?templateMotifCigarQ01225MF_04143112, CONCAT('^(?:-*[^-]){', STR(((60 - ?templateMotifSequenceMatchBeginPositionQ01225113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ01225MF_04143114, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_04143114) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_04143114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ01225MF_04143114, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_04143114) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_04143114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_04143115) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_04143a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionQ01225132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ01225134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ01225MF_04143127 .
?templateMotifSequenceMatchRegionQ01225132 faldo:begin ?templateMotifSequenceMatchBeginQ01225133 .
?templateMotifSequenceMatchBeginQ01225133 faldo:position ?templateMotifSequenceMatchBeginPositionQ01225128 ;
faldo:reference isoform:Q01225-1 .
?templateMotifSequenceProfileAlignmentOperationQ01225134 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04143138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ01225MF_04143129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04143137 .
?targetMotifMatchRegionMatchBeginMF_04143137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04143130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04143138 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:10239 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ01225MF_04143127, 1, (STRLEN(?templateMotifCigarQ01225MF_04143127) - STRLEN(REPLACE(?templateMotifCigarQ01225MF_04143127, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionQ01225128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ01225MF_04143129, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_04143129) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_04143129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ01225MF_04143129, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_04143129) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_04143129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_04143130) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'I')) .
BIND(URI(CONCAT(STR(?this), '#MF_04143a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch146 faldo:location ?templateMotifSequenceMatchRegionQ01225147 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ01225149 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ01225MF_04143142 .
?templateMotifSequenceMatchRegionQ01225147 faldo:begin ?templateMotifSequenceMatchBeginQ01225148 .
?templateMotifSequenceMatchBeginQ01225148 faldo:position ?templateMotifSequenceMatchBeginPositionQ01225143 ;
faldo:reference isoform:Q01225-1 .
?templateMotifSequenceProfileAlignmentOperationQ01225149 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch150 faldo:location ?targetMotifMatchRegionMatch151 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04143153 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ01225MF_04143144 .
?targetMotifMatchRegionMatch151 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04143152 .
?targetMotifMatchRegionMatchBeginMF_04143152 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04143145 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04143153 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:10239 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ01225MF_04143142, 1, (STRLEN(?templateMotifCigarQ01225MF_04143142) - STRLEN(REPLACE(?templateMotifCigarQ01225MF_04143142, CONCAT('^(?:-*[^-]){', STR(((149 - ?templateMotifSequenceMatchBeginPositionQ01225143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ01225MF_04143144, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_04143144) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_04143144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ01225MF_04143144, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_04143144) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_04143144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) .
BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_04143145) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t156) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_04143a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch161 faldo:location ?templateMotifSequenceMatchRegionQ01225162 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ01225164 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ01225MF_04143157 .
?templateMotifSequenceMatchRegionQ01225162 faldo:begin ?templateMotifSequenceMatchBeginQ01225163 .
?templateMotifSequenceMatchBeginQ01225163 faldo:position ?templateMotifSequenceMatchBeginPositionQ01225158 ;
faldo:reference isoform:Q01225-1 .
?templateMotifSequenceProfileAlignmentOperationQ01225164 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch165 faldo:location ?targetMotifMatchRegionMatch166 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04143168 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ01225MF_04143159 .
?targetMotifMatchRegionMatch166 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04143167 .
?targetMotifMatchRegionMatchBeginMF_04143167 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04143160 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04143168 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:10239 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ01225MF_04143157, 1, (STRLEN(?templateMotifCigarQ01225MF_04143157) - STRLEN(REPLACE(?templateMotifCigarQ01225MF_04143157, CONCAT('^(?:-*[^-]){', STR(((169 - ?templateMotifSequenceMatchBeginPositionQ01225158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ01225MF_04143159, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_04143159) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_04143159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ01225MF_04143159, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_04143159) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_04143159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) .
BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_04143160) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t171) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse45) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_04143a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch176 faldo:location ?templateMotifSequenceMatchRegionQ01225177 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ01225179 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ01225MF_04143172 .
?templateMotifSequenceMatchRegionQ01225177 faldo:begin ?templateMotifSequenceMatchBeginQ01225178 .
?templateMotifSequenceMatchBeginQ01225178 faldo:position ?templateMotifSequenceMatchBeginPositionQ01225173 ;
faldo:reference isoform:Q01225-1 .
?templateMotifSequenceProfileAlignmentOperationQ01225179 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch180 faldo:location ?targetMotifMatchRegionMatch181 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04143183 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ01225MF_04143174 .
?targetMotifMatchRegionMatch181 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04143182 .
?targetMotifMatchRegionMatchBeginMF_04143182 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04143175 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04143183 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:10239 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ01225MF_04143172, 1, (STRLEN(?templateMotifCigarQ01225MF_04143172) - STRLEN(REPLACE(?templateMotifCigarQ01225MF_04143172, CONCAT('^(?:-*[^-]){', STR(((182 - ?templateMotifSequenceMatchBeginPositionQ01225173) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1184) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ01225MF_04143174, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_04143174) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_04143174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ01225MF_04143174, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_04143174) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_04143174, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1184), '}'), '')))), '[^-]', ''))) AS ?step2185) .
BIND(((?step2185 + ?targetMotifMatchRegionMatchBeginPositionMF_04143175) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t186) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb50) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse51) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_04143a49')) AS ?annotation49) .
BIND(?this AS ?pfs48) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch191 faldo:location ?templateMotifSequenceMatchRegionQ01225192 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ01225194 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ01225MF_04143187 .
?templateMotifSequenceMatchRegionQ01225192 faldo:begin ?templateMotifSequenceMatchBeginQ01225193 .
?templateMotifSequenceMatchBeginQ01225193 faldo:position ?templateMotifSequenceMatchBeginPositionQ01225188 ;
faldo:reference isoform:Q01225-1 .
?templateMotifSequenceProfileAlignmentOperationQ01225194 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch195 faldo:location ?targetMotifMatchRegionMatch196 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04143198 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ01225MF_04143189 .
?targetMotifMatchRegionMatch196 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04143197 .
?targetMotifMatchRegionMatchBeginMF_04143197 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04143190 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04143198 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:10239 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ01225MF_04143187, 1, (STRLEN(?templateMotifCigarQ01225MF_04143187) - STRLEN(REPLACE(?templateMotifCigarQ01225MF_04143187, CONCAT('^(?:-*[^-]){', STR(((184 - ?templateMotifSequenceMatchBeginPositionQ01225188) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ01225MF_04143189, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_04143189) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_04143189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ01225MF_04143189, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_04143189) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_04143189, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1199), '}'), '')))), '[^-]', ''))) AS ?step2200) .
BIND(((?step2200 + ?targetMotifMatchRegionMatchBeginPositionMF_04143190) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t201) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_04143a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch206 faldo:location ?templateMotifSequenceMatchRegionQ01225207 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ01225209 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ01225MF_04143202 .
?templateMotifSequenceMatchRegionQ01225207 faldo:begin ?templateMotifSequenceMatchBeginQ01225208 .
?templateMotifSequenceMatchBeginQ01225208 faldo:position ?templateMotifSequenceMatchBeginPositionQ01225203 ;
faldo:reference isoform:Q01225-1 .
?templateMotifSequenceProfileAlignmentOperationQ01225209 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?targetMotifMatch210 faldo:location ?targetMotifMatchRegionMatch211 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_04143213 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ01225MF_04143204 .
?targetMotifMatchRegionMatch211 faldo:begin ?targetMotifMatchRegionMatchBeginMF_04143212 .
?targetMotifMatchRegionMatchBeginMF_04143212 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_04143205 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_04143213 edam:has_input signature:MF_04143 ;
rdf:type edam:operation_0300 .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:10239 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ01225MF_04143202, 1, (STRLEN(?templateMotifCigarQ01225MF_04143202) - STRLEN(REPLACE(?templateMotifCigarQ01225MF_04143202, CONCAT('^(?:-*[^-]){', STR(((186 - ?templateMotifSequenceMatchBeginPositionQ01225203) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1214) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ01225MF_04143204, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_04143204) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_04143204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ01225MF_04143204, 1, (STRLEN(?targetMotifMatchCigarQ01225MF_04143204) - STRLEN(REPLACE(?targetMotifMatchCigarQ01225MF_04143204, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1214), '}'), '')))), '[^-]', ''))) AS ?step2215) .
BIND(((?step2215 + ?targetMotifMatchRegionMatchBeginPositionMF_04143205) - 1) AS ?thisPositionOn64) .
BIND(?thisPositionOn64 AS ?thisPositionOn65) .
BIND(?this AS ?pfs1t216) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn64))) AS ?pfsb62) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn65))) AS ?pfse63) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn64, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_04143a61')) AS ?annotation61) .
BIND(?this AS ?pfs60) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:50557 .
BIND(?this AS ?case2) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:10239 .
BIND(?this AS ?case3) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:10240 .
BIND(?this AS ?case4) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:10239 .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:10240 .
})) .
BIND(?this AS ?case5) .
}
}
"xsd:string |
