| http://purl.uniprot.org/unirules/MF_00083#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:32152 up:source unirule:MF_00083 .
_:32153 up:source unirule:MF_00083 .
_:32154 up:source unirule:MF_00083 .
_:32155 up:source unirule:MF_00083 .
_:32156 up:source unirule:MF_00083 .
_:32157 up:source unirule:MF_00083 .
_:32158 up:source unirule:MF_00083 .
_:32159 up:source unirule:MF_00083 .
_:32160 up:source unirule:MF_00083 .
_:32161 up:source unirule:MF_00083 .
_:32162 up:source unirule:MF_00083 .
_:32163 up:source unirule:MF_00083 .
_:32164 up:source unirule:MF_00083 .
_:32165 up:source unirule:MF_00083 .
_:32166 up:source unirule:MF_00083 .
_:32167 up:source unirule:MF_00083 .
_:32168 up:source unirule:MF_00083 .
_:32169 up:source unirule:MF_00083 .
_:32170 up:source unirule:MF_00083 .
_:32171 up:source unirule:MF_00083 .
_:32172 up:source unirule:MF_00083 .
_:32173 up:source unirule:MF_00083 .
_:32174 up:source unirule:MF_00083 .
_:32175 up:source unirule:MF_00083 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0000049 ,
GO:0004045 ,
GO:0005737 ,
GO:0006515 ,
GO:0072344 ,
keyword:378 ,
keyword:694 ,
keyword:820 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.1.29' ;
up:fullName 'Peptidyl-tRNA hydrolase' ;
up:shortName 'Pth' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'pth' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Hydrolyzes ribosome-free peptidyl-tRNAs (with 1 or more amino acids incorporated), which drop off the ribosome during protein synthesis, or as a result of ribosome stalling.' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the release of premature peptidyl moieties from peptidyl-tRNA molecules trapped in stalled 50S ribosomal subunits, and thus maintains levels of free tRNAs and 50S ribosomes.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Monomer.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the PTH family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:17843 .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:17843 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:17843 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
up:ligand ?ligand41 ;
rdf:type up:Binding_Site_Annotation .
?pfsb39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?ligand41 rdfs:subClassOf chebi:17843 .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Discriminates between blocked and unblocked aminoacyl-tRNA' .
?pfsb46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Stabilizes the basic form of H active site to accept a proton' .
?pfsb52 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
_:32176 a rdf:Statement ;
up:attribution _:32152 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:32177 a rdf:Statement ;
up:attribution _:32153 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:32178 a rdf:Statement ;
up:attribution _:32154 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:32179 a rdf:Statement ;
up:attribution _:32155 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:32180 a rdf:Statement ;
up:attribution _:32156 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:32181 a rdf:Statement ;
up:attribution _:32157 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:32182 a rdf:Statement ;
up:attribution _:32158 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:32183 a rdf:Statement ;
up:attribution _:32159 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:32184 a rdf:Statement ;
up:attribution _:32160 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:32185 a rdf:Statement ;
up:attribution _:32161 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:32186 a rdf:Statement ;
up:attribution _:32162 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:32187 a rdf:Statement ;
up:attribution _:32163 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:820 .
_:32188 a rdf:Statement ;
up:attribution _:32164 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004045 .
_:32189 a rdf:Statement ;
up:attribution _:32165 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:32190 a rdf:Statement ;
up:attribution _:32166 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000049 .
_:32191 a rdf:Statement ;
up:attribution _:32167 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006515 .
_:32192 a rdf:Statement ;
up:attribution _:32168 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0072344 .
_:32193 a rdf:Statement ;
up:source unirule:MF_00083 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:32194 a rdf:Statement ;
up:attribution _:32169 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:32195 a rdf:Statement ;
up:source unirule:MF_00083 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:32196 a rdf:Statement ;
up:attribution _:32170 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:32197 a rdf:Statement ;
up:source unirule:MF_00083 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:32198 a rdf:Statement ;
up:attribution _:32171 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:32199 a rdf:Statement ;
up:source unirule:MF_00083 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:32200 a rdf:Statement ;
up:attribution _:32172 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:32201 a rdf:Statement ;
up:source unirule:MF_00083 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:32202 a rdf:Statement ;
up:attribution _:32173 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:32203 a rdf:Statement ;
up:source unirule:MF_00083 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:32204 a rdf:Statement ;
up:attribution _:32174 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:32205 a rdf:Statement ;
up:source unirule:MF_00083 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:32206 a rdf:Statement ;
up:attribution _:32175 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00083
#Rule MF_00083 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-03-21
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00083 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00083a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00083a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00083a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00083a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00083a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00083a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00083a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch60 faldo:location ?templateMotifSequenceMatchRegionP0A7D161 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D163 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7D1MF_0008356 .
?templateMotifSequenceMatchRegionP0A7D161 faldo:begin ?templateMotifSequenceMatchBeginP0A7D162 .
?templateMotifSequenceMatchBeginP0A7D162 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D157 ;
faldo:reference isoform:P0A7D1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7D163 edam:has_input signature:MF_00083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch64 faldo:location ?targetMotifMatchRegionMatch65 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0008367 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7D1MF_0008358 .
?targetMotifMatchRegionMatch65 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0008366 .
?targetMotifMatchRegionMatchBeginMF_0008366 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0008359 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0008367 edam:has_input signature:MF_00083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D1MF_0008356, 1, (STRLEN(?templateMotifCigarP0A7D1MF_0008356) - STRLEN(REPLACE(?templateMotifCigarP0A7D1MF_0008356, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionP0A7D157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D1MF_0008358, 1, (STRLEN(?targetMotifMatchCigarP0A7D1MF_0008358) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D1MF_0008358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D1MF_0008358, 1, (STRLEN(?targetMotifMatchCigarP0A7D1MF_0008358) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D1MF_0008358, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step168), '}'), '')))), '[^-]', ''))) AS ?step269) .
BIND(((?step269 + ?targetMotifMatchRegionMatchBeginPositionMF_0008359) - 1) AS ?thisPositionOn14) .
BIND(?thisPositionOn14 AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t70) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn14, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00083a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch75 faldo:location ?templateMotifSequenceMatchRegionP0A7D176 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D178 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7D1MF_0008371 .
?templateMotifSequenceMatchRegionP0A7D176 faldo:begin ?templateMotifSequenceMatchBeginP0A7D177 .
?templateMotifSequenceMatchBeginP0A7D177 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D172 ;
faldo:reference isoform:P0A7D1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7D178 edam:has_input signature:MF_00083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch79 faldo:location ?targetMotifMatchRegionMatch80 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0008382 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7D1MF_0008373 .
?targetMotifMatchRegionMatch80 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0008381 .
?targetMotifMatchRegionMatchBeginMF_0008381 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0008374 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0008382 edam:has_input signature:MF_00083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D1MF_0008371, 1, (STRLEN(?templateMotifCigarP0A7D1MF_0008371) - STRLEN(REPLACE(?templateMotifCigarP0A7D1MF_0008371, CONCAT('^(?:-*[^-]){', STR(((16 - ?templateMotifSequenceMatchBeginPositionP0A7D172) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D1MF_0008373, 1, (STRLEN(?targetMotifMatchCigarP0A7D1MF_0008373) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D1MF_0008373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D1MF_0008373, 1, (STRLEN(?targetMotifMatchCigarP0A7D1MF_0008373) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D1MF_0008373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) .
BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0008374) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t85) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER (REGEX('[YFH]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00083a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch90 faldo:location ?templateMotifSequenceMatchRegionP0A7D191 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D193 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7D1MF_0008386 .
?templateMotifSequenceMatchRegionP0A7D191 faldo:begin ?templateMotifSequenceMatchBeginP0A7D192 .
?templateMotifSequenceMatchBeginP0A7D192 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D187 ;
faldo:reference isoform:P0A7D1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7D193 edam:has_input signature:MF_00083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch94 faldo:location ?targetMotifMatchRegionMatch95 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0008397 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7D1MF_0008388 .
?targetMotifMatchRegionMatch95 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0008396 .
?targetMotifMatchRegionMatchBeginMF_0008396 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0008389 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0008397 edam:has_input signature:MF_00083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D1MF_0008386, 1, (STRLEN(?templateMotifCigarP0A7D1MF_0008386) - STRLEN(REPLACE(?templateMotifCigarP0A7D1MF_0008386, CONCAT('^(?:-*[^-]){', STR(((67 - ?templateMotifSequenceMatchBeginPositionP0A7D187) + 1)), '}'), '')))), '[a-z]', '')) AS ?step198) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D1MF_0008388, 1, (STRLEN(?targetMotifMatchCigarP0A7D1MF_0008388) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D1MF_0008388, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D1MF_0008388, 1, (STRLEN(?targetMotifMatchCigarP0A7D1MF_0008388) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D1MF_0008388, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step198), '}'), '')))), '[^-]', ''))) AS ?step299) .
BIND(((?step299 + ?targetMotifMatchRegionMatchBeginPositionMF_0008389) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t100) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER (REGEX('[FYM]', SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00083a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch105 faldo:location ?templateMotifSequenceMatchRegionP0A7D1106 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D1108 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7D1MF_00083101 .
?templateMotifSequenceMatchRegionP0A7D1106 faldo:begin ?templateMotifSequenceMatchBeginP0A7D1107 .
?templateMotifSequenceMatchBeginP0A7D1107 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D1102 ;
faldo:reference isoform:P0A7D1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7D1108 edam:has_input signature:MF_00083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch109 faldo:location ?targetMotifMatchRegionMatch110 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00083112 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7D1MF_00083103 .
?targetMotifMatchRegionMatch110 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00083111 .
?targetMotifMatchRegionMatchBeginMF_00083111 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00083104 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00083112 edam:has_input signature:MF_00083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D1MF_00083101, 1, (STRLEN(?templateMotifCigarP0A7D1MF_00083101) - STRLEN(REPLACE(?templateMotifCigarP0A7D1MF_00083101, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionP0A7D1102) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1113) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D1MF_00083103, 1, (STRLEN(?targetMotifMatchCigarP0A7D1MF_00083103) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D1MF_00083103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D1MF_00083103, 1, (STRLEN(?targetMotifMatchCigarP0A7D1MF_00083103) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D1MF_00083103, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1113), '}'), '')))), '[^-]', ''))) AS ?step2114) .
BIND(((?step2114 + ?targetMotifMatchRegionMatchBeginPositionMF_00083104) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t115) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00083a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch120 faldo:location ?templateMotifSequenceMatchRegionP0A7D1121 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D1123 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7D1MF_00083116 .
?templateMotifSequenceMatchRegionP0A7D1121 faldo:begin ?templateMotifSequenceMatchBeginP0A7D1122 .
?templateMotifSequenceMatchBeginP0A7D1122 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D1117 ;
faldo:reference isoform:P0A7D1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7D1123 edam:has_input signature:MF_00083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch124 faldo:location ?targetMotifMatchRegionMatch125 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00083127 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7D1MF_00083118 .
?targetMotifMatchRegionMatch125 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00083126 .
?targetMotifMatchRegionMatchBeginMF_00083126 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00083119 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00083127 edam:has_input signature:MF_00083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D1MF_00083116, 1, (STRLEN(?templateMotifCigarP0A7D1MF_00083116) - STRLEN(REPLACE(?templateMotifCigarP0A7D1MF_00083116, CONCAT('^(?:-*[^-]){', STR(((115 - ?templateMotifSequenceMatchBeginPositionP0A7D1117) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1128) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D1MF_00083118, 1, (STRLEN(?targetMotifMatchCigarP0A7D1MF_00083118) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D1MF_00083118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D1MF_00083118, 1, (STRLEN(?targetMotifMatchCigarP0A7D1MF_00083118) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D1MF_00083118, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1128), '}'), '')))), '[^-]', ''))) AS ?step2129) .
BIND(((?step2129 + ?targetMotifMatchRegionMatchBeginPositionMF_00083119) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t130) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse40) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00083a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch135 faldo:location ?templateMotifSequenceMatchRegionP0A7D1136 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D1138 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7D1MF_00083131 .
?templateMotifSequenceMatchRegionP0A7D1136 faldo:begin ?templateMotifSequenceMatchBeginP0A7D1137 .
?templateMotifSequenceMatchBeginP0A7D1137 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D1132 ;
faldo:reference isoform:P0A7D1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7D1138 edam:has_input signature:MF_00083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch139 faldo:location ?targetMotifMatchRegionMatch140 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00083142 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7D1MF_00083133 .
?targetMotifMatchRegionMatch140 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00083141 .
?targetMotifMatchRegionMatchBeginMF_00083141 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00083134 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00083142 edam:has_input signature:MF_00083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D1MF_00083131, 1, (STRLEN(?templateMotifCigarP0A7D1MF_00083131) - STRLEN(REPLACE(?templateMotifCigarP0A7D1MF_00083131, CONCAT('^(?:-*[^-]){', STR(((11 - ?templateMotifSequenceMatchBeginPositionP0A7D1132) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1143) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D1MF_00083133, 1, (STRLEN(?targetMotifMatchCigarP0A7D1MF_00083133) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D1MF_00083133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D1MF_00083133, 1, (STRLEN(?targetMotifMatchCigarP0A7D1MF_00083133) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D1MF_00083133, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1143), '}'), '')))), '[^-]', ''))) AS ?step2144) .
BIND(((?step2144 + ?targetMotifMatchRegionMatchBeginPositionMF_00083134) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t145) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00083a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch150 faldo:location ?templateMotifSequenceMatchRegionP0A7D1151 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A7D1153 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A7D1MF_00083146 .
?templateMotifSequenceMatchRegionP0A7D1151 faldo:begin ?templateMotifSequenceMatchBeginP0A7D1152 .
?templateMotifSequenceMatchBeginP0A7D1152 faldo:position ?templateMotifSequenceMatchBeginPositionP0A7D1147 ;
faldo:reference isoform:P0A7D1-1 .
?templateMotifSequenceProfileAlignmentOperationP0A7D1153 edam:has_input signature:MF_00083 ;
rdf:type edam:operation_0300 .
?targetMotifMatch154 faldo:location ?targetMotifMatchRegionMatch155 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00083157 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A7D1MF_00083148 .
?targetMotifMatchRegionMatch155 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00083156 .
?targetMotifMatchRegionMatchBeginMF_00083156 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00083149 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00083157 edam:has_input signature:MF_00083 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A7D1MF_00083146, 1, (STRLEN(?templateMotifCigarP0A7D1MF_00083146) - STRLEN(REPLACE(?templateMotifCigarP0A7D1MF_00083146, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionP0A7D1147) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A7D1MF_00083148, 1, (STRLEN(?targetMotifMatchCigarP0A7D1MF_00083148) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D1MF_00083148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A7D1MF_00083148, 1, (STRLEN(?targetMotifMatchCigarP0A7D1MF_00083148) - STRLEN(REPLACE(?targetMotifMatchCigarP0A7D1MF_00083148, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1158), '}'), '')))), '[^-]', ''))) AS ?step2159) .
BIND(((?step2159 + ?targetMotifMatchRegionMatchBeginPositionMF_00083149) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs1t160) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00083a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
}
"xsd:string |
