| http://purl.uniprot.org/unirules/MF_00087#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:33960 up:source unirule:MF_00087 .
_:33961 up:source unirule:MF_00087 .
_:33962 up:source unirule:MF_00087 .
_:33963 up:source unirule:MF_00087 .
_:33964 up:source unirule:MF_00087 .
_:33965 up:source unirule:MF_00087 .
_:33966 up:source unirule:MF_00087 .
_:33967 up:source unirule:MF_00087 .
_:33968 up:source unirule:MF_00087 .
_:33969 up:source unirule:MF_00087 .
_:33970 up:source unirule:MF_00087 .
_:33971 up:source unirule:MF_00087 .
_:33972 up:source unirule:MF_00087 .
_:33973 up:source unirule:MF_00087 .
_:33974 up:source unirule:MF_00087 .
_:33975 up:source unirule:MF_00087 .
_:33976 up:source unirule:MF_00087 .
_:33977 up:source unirule:MF_00087 .
_:33978 up:source unirule:MF_00087 .
_:33979 up:source unirule:MF_00087 .
_:33980 up:source unirule:MF_00087 .
_:33981 up:source unirule:MF_00087 .
_:33982 up:source unirule:MF_00087 .
_:33983 up:source unirule:MF_00087 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0006782 ,
GO:0008883 ,
keyword:521 ,
keyword:560 ,
keyword:627 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.2.1.70' ;
up:fullName 'Glutamyl-tRNA reductase' ;
up:shortName 'GluTR' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'hemA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; 5-aminolevulinate from L-glutamyl-tRNA(Glu): step 1/2.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Domain_Annotation ;
rdfs:comment "Possesses an unusual extended V-shaped dimeric structure with each monomer consisting of three distinct domains arranged along a curved 'spinal' alpha-helix. The N-terminal catalytic domain specifically recognizes the glutamate moiety of the substrate. The second domain is the NADPH-binding domain, and the third C-terminal domain is responsible for dimerization." .
?annotation8 a up:Annotation ;
rdfs:comment 'During catalysis, the active site Cys acts as a nucleophile attacking the alpha-carbonyl group of tRNA-bound glutamate with the formation of a thioester intermediate between enzyme and glutamate, and the concomitant release of tRNA(Glu). The thioester intermediate is finally reduced by direct hydride transfer from NADPH, to form the product GSA.' .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the glutamyl-tRNA reductase family.' .
?case10 up:classifiedWith GO:0009507 .
?case11 up:classifiedWith GO:0015995 ,
keyword:149 .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:58349 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf ?molecule24 .
?molecule24 rdfs:label 'substrate' .
?pfs27 up:annotation ?annotation28 .
?annotation28 faldo:begin ?pfsb29 ;
faldo:end ?pfse30 ;
up:ligand ?ligand31 ;
rdf:type up:Binding_Site_Annotation .
?pfsb29 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse30 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand31 rdfs:subClassOf ?molecule32 .
?molecule32 rdfs:label 'substrate' .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf ?molecule46 .
?molecule46 rdfs:label 'substrate' .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf ?molecule54 .
?molecule54 rdfs:label 'substrate' .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Important for activity' .
?pfsb59 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
_:33984 a rdf:Statement ;
up:attribution _:33960 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:33985 a rdf:Statement ;
up:attribution _:33961 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:33986 a rdf:Statement ;
up:attribution _:33962 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:33987 a rdf:Statement ;
up:attribution _:33963 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:33988 a rdf:Statement ;
up:attribution _:33964 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:33989 a rdf:Statement ;
up:attribution _:33965 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:33990 a rdf:Statement ;
up:attribution _:33966 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:33991 a rdf:Statement ;
up:attribution _:33967 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:33992 a rdf:Statement ;
up:attribution _:33968 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:33993 a rdf:Statement ;
up:attribution _:33969 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:627 .
_:33994 a rdf:Statement ;
up:attribution _:33970 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:33995 a rdf:Statement ;
up:attribution _:33971 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:33996 a rdf:Statement ;
up:attribution _:33972 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008883 .
_:33997 a rdf:Statement ;
up:attribution _:33973 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006782 .
_:33998 a rdf:Statement ;
up:attribution _:33974 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009507 .
_:33999 a rdf:Statement ;
up:attribution _:33975 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:149 .
_:34000 a rdf:Statement ;
up:attribution _:33976 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015995 .
_:34001 a rdf:Statement ;
up:source unirule:MF_00087 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:34002 a rdf:Statement ;
up:attribution _:33977 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:34003 a rdf:Statement ;
up:source unirule:MF_00087 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:34004 a rdf:Statement ;
up:attribution _:33978 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:34005 a rdf:Statement ;
up:source unirule:MF_00087 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:34006 a rdf:Statement ;
up:attribution _:33979 ;
rdf:subject ?pfs27 ;
rdf:predicate up:annotation ;
rdf:object ?annotation28 .
_:34007 a rdf:Statement ;
up:source unirule:MF_00087 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:34008 a rdf:Statement ;
up:attribution _:33980 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:34009 a rdf:Statement ;
up:source unirule:MF_00087 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:34010 a rdf:Statement ;
up:attribution _:33981 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:34011 a rdf:Statement ;
up:source unirule:MF_00087 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:34012 a rdf:Statement ;
up:attribution _:33982 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:34013 a rdf:Statement ;
up:source unirule:MF_00087 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:34014 a rdf:Statement ;
up:attribution _:33983 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00087
#Rule MF_00087 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
{
VALUES ?supertaxon63 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00087 .
?thisOrganism rdfs:subClassOf+ ?supertaxon63 .
} UNION {
?this rdfs:seeAlso signature:MF_00087 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
}
BIND(URI(CONCAT(STR(?this), '#MF_00087a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00087a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00087a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00087a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00087a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00087a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00087a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00087a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch68 faldo:location ?templateMotifSequenceMatchRegionQ9UXR869 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXR871 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXR8MF_0008764 .
?templateMotifSequenceMatchRegionQ9UXR869 faldo:begin ?templateMotifSequenceMatchBeginQ9UXR870 .
?templateMotifSequenceMatchBeginQ9UXR870 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXR865 ;
faldo:reference isoform:Q9UXR8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXR871 edam:has_input signature:MF_00087 ;
rdf:type edam:operation_0300 .
?targetMotifMatch72 faldo:location ?targetMotifMatchRegionMatch73 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0008775 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXR8MF_0008766 .
?targetMotifMatchRegionMatch73 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0008774 .
?targetMotifMatchRegionMatchBeginMF_0008774 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0008767 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0008775 edam:has_input signature:MF_00087 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXR8MF_0008764, 1, (STRLEN(?templateMotifCigarQ9UXR8MF_0008764) - STRLEN(REPLACE(?templateMotifCigarQ9UXR8MF_0008764, CONCAT('^(?:-*[^-]){', STR(((174 - ?templateMotifSequenceMatchBeginPositionQ9UXR865) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_0008766, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_0008766) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_0008766, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_0008766, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_0008766) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_0008766, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0008767) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXR8MF_0008764, 1, (STRLEN(?templateMotifCigarQ9UXR8MF_0008764) - STRLEN(REPLACE(?templateMotifCigarQ9UXR8MF_0008764, CONCAT('^(?:-*[^-]){', STR(((179 - ?templateMotifSequenceMatchBeginPositionQ9UXR865) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_0008766, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_0008766) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_0008766, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_0008766, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_0008766) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_0008766, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0008767) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((BOUND(?thisPositionOn17) && BOUND(?thisPositionOn18))) .
BIND(URI(CONCAT(STR(?this), '#MF_00087a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionQ9UXR886 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXR888 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXR8MF_0008781 .
?templateMotifSequenceMatchRegionQ9UXR886 faldo:begin ?templateMotifSequenceMatchBeginQ9UXR887 .
?templateMotifSequenceMatchBeginQ9UXR887 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXR882 ;
faldo:reference isoform:Q9UXR8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXR888 edam:has_input signature:MF_00087 ;
rdf:type edam:operation_0300 .
?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0008792 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXR8MF_0008783 .
?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0008791 .
?targetMotifMatchRegionMatchBeginMF_0008791 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0008784 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0008792 edam:has_input signature:MF_00087 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXR8MF_0008781, 1, (STRLEN(?templateMotifCigarQ9UXR8MF_0008781) - STRLEN(REPLACE(?templateMotifCigarQ9UXR8MF_0008781, CONCAT('^(?:-*[^-]){', STR(((47 - ?templateMotifSequenceMatchBeginPositionQ9UXR882) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_0008783, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_0008783) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_0008783, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_0008783, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_0008783) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_0008783, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0008784) - 1) AS ?thisPositionOn25) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXR8MF_0008781, 1, (STRLEN(?templateMotifCigarQ9UXR8MF_0008781) - STRLEN(REPLACE(?templateMotifCigarQ9UXR8MF_0008781, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionQ9UXR882) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_0008783, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_0008783) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_0008783, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_0008783, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_0008783) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_0008783, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0008784) - 1) AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse22) .
FILTER (REGEX('TC[ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn25, (?thisPositionOn26 - ?thisPositionOn25)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00087a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionQ9UXR8103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXR8105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXR8MF_0008798 .
?templateMotifSequenceMatchRegionQ9UXR8103 faldo:begin ?templateMotifSequenceMatchBeginQ9UXR8104 .
?templateMotifSequenceMatchBeginQ9UXR8104 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXR899 ;
faldo:reference isoform:Q9UXR8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXR8105 edam:has_input signature:MF_00087 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00087109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXR8MF_00087100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00087108 .
?targetMotifMatchRegionMatchBeginMF_00087108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00087101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00087109 edam:has_input signature:MF_00087 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXR8MF_0008798, 1, (STRLEN(?templateMotifCigarQ9UXR8MF_0008798) - STRLEN(REPLACE(?templateMotifCigarQ9UXR8MF_0008798, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionQ9UXR899) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_00087100, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_00087100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_00087100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_00087100, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_00087100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_00087100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_00087101) - 1) AS ?thisPositionOn33) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXR8MF_0008798, 1, (STRLEN(?templateMotifCigarQ9UXR8MF_0008798) - STRLEN(REPLACE(?templateMotifCigarQ9UXR8MF_0008798, CONCAT('^(?:-*[^-]){', STR(((101 - ?templateMotifSequenceMatchBeginPositionQ9UXR899) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_00087100, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_00087100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_00087100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_00087100, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_00087100) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_00087100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_00087101) - 1) AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb29) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse30) .
FILTER (REGEX('[ED][ARNDCQEGHILKMFPSTWYVBZJUOX][EDQ]', SUBSTR(?thisSequenceValue, ?thisPositionOn33, (?thisPositionOn34 - ?thisPositionOn33)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00087a28')) AS ?annotation28) .
BIND(?this AS ?pfs27) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionQ9UXR8120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXR8122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXR8MF_00087115 .
?templateMotifSequenceMatchRegionQ9UXR8120 faldo:begin ?templateMotifSequenceMatchBeginQ9UXR8121 .
?templateMotifSequenceMatchBeginQ9UXR8121 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXR8116 ;
faldo:reference isoform:Q9UXR8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXR8122 edam:has_input signature:MF_00087 ;
rdf:type edam:operation_0300 .
?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00087126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXR8MF_00087117 .
?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00087125 .
?targetMotifMatchRegionMatchBeginMF_00087125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00087118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00087126 edam:has_input signature:MF_00087 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXR8MF_00087115, 1, (STRLEN(?templateMotifCigarQ9UXR8MF_00087115) - STRLEN(REPLACE(?templateMotifCigarQ9UXR8MF_00087115, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionQ9UXR8116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_00087117, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_00087117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_00087117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_00087117, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_00087117) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_00087117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_00087118) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00087a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch134 faldo:location ?templateMotifSequenceMatchRegionQ9UXR8135 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXR8137 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXR8MF_00087130 .
?templateMotifSequenceMatchRegionQ9UXR8135 faldo:begin ?templateMotifSequenceMatchBeginQ9UXR8136 .
?templateMotifSequenceMatchBeginQ9UXR8136 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXR8131 ;
faldo:reference isoform:Q9UXR8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXR8137 edam:has_input signature:MF_00087 ;
rdf:type edam:operation_0300 .
?targetMotifMatch138 faldo:location ?targetMotifMatchRegionMatch139 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00087141 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXR8MF_00087132 .
?targetMotifMatchRegionMatch139 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00087140 .
?targetMotifMatchRegionMatchBeginMF_00087140 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00087133 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00087141 edam:has_input signature:MF_00087 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXR8MF_00087130, 1, (STRLEN(?templateMotifCigarQ9UXR8MF_00087130) - STRLEN(REPLACE(?templateMotifCigarQ9UXR8MF_00087130, CONCAT('^(?:-*[^-]){', STR(((94 - ?templateMotifSequenceMatchBeginPositionQ9UXR8131) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1142) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_00087132, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_00087132) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_00087132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_00087132, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_00087132) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_00087132, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1142), '}'), '')))), '[^-]', ''))) AS ?step2143) .
BIND(((?step2143 + ?targetMotifMatchRegionMatchBeginPositionMF_00087133) - 1) AS ?thisPositionOn47) .
BIND(?thisPositionOn47 AS ?thisPositionOn48) .
BIND(?this AS ?pfs1t144) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn47, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00087a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch149 faldo:location ?templateMotifSequenceMatchRegionQ9UXR8150 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXR8152 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXR8MF_00087145 .
?templateMotifSequenceMatchRegionQ9UXR8150 faldo:begin ?templateMotifSequenceMatchBeginQ9UXR8151 .
?templateMotifSequenceMatchBeginQ9UXR8151 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXR8146 ;
faldo:reference isoform:Q9UXR8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXR8152 edam:has_input signature:MF_00087 ;
rdf:type edam:operation_0300 .
?targetMotifMatch153 faldo:location ?targetMotifMatchRegionMatch154 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00087156 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXR8MF_00087147 .
?targetMotifMatchRegionMatch154 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00087155 .
?targetMotifMatchRegionMatchBeginMF_00087155 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00087148 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00087156 edam:has_input signature:MF_00087 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXR8MF_00087145, 1, (STRLEN(?templateMotifCigarQ9UXR8MF_00087145) - STRLEN(REPLACE(?templateMotifCigarQ9UXR8MF_00087145, CONCAT('^(?:-*[^-]){', STR(((105 - ?templateMotifSequenceMatchBeginPositionQ9UXR8146) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_00087147, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_00087147) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_00087147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_00087147, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_00087147) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_00087147, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1157), '}'), '')))), '[^-]', ''))) AS ?step2158) .
BIND(((?step2158 + ?targetMotifMatchRegionMatchBeginPositionMF_00087148) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t159) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse52) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_00087a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch164 faldo:location ?templateMotifSequenceMatchRegionQ9UXR8165 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ9UXR8167 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ9UXR8MF_00087160 .
?templateMotifSequenceMatchRegionQ9UXR8165 faldo:begin ?templateMotifSequenceMatchBeginQ9UXR8166 .
?templateMotifSequenceMatchBeginQ9UXR8166 faldo:position ?templateMotifSequenceMatchBeginPositionQ9UXR8161 ;
faldo:reference isoform:Q9UXR8-1 .
?templateMotifSequenceProfileAlignmentOperationQ9UXR8167 edam:has_input signature:MF_00087 ;
rdf:type edam:operation_0300 .
?targetMotifMatch168 faldo:location ?targetMotifMatchRegionMatch169 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00087171 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ9UXR8MF_00087162 .
?targetMotifMatchRegionMatch169 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00087170 .
?targetMotifMatchRegionMatchBeginMF_00087170 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00087163 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00087171 edam:has_input signature:MF_00087 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ9UXR8MF_00087160, 1, (STRLEN(?templateMotifCigarQ9UXR8MF_00087160) - STRLEN(REPLACE(?templateMotifCigarQ9UXR8MF_00087160, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionQ9UXR8161) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_00087162, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_00087162) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_00087162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ9UXR8MF_00087162, 1, (STRLEN(?targetMotifMatchCigarQ9UXR8MF_00087162) - STRLEN(REPLACE(?targetMotifMatchCigarQ9UXR8MF_00087162, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1172), '}'), '')))), '[^-]', ''))) AS ?step2173) .
BIND(((?step2173 + ?targetMotifMatchRegionMatchBeginPositionMF_00087163) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs1t174) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00087a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p175 .
?p175 skos:narrower .
}
BIND(?this AS ?case11) .
}
}
"xsd:string |
