| http://purl.uniprot.org/unirules/MF_00098#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:37906 up:source unirule:MF_00098 .
_:37907 up:source unirule:MF_00098 .
_:37908 up:source unirule:MF_00098 .
_:37909 up:source unirule:MF_00098 .
_:37910 up:source unirule:MF_00098 .
_:37911 up:source unirule:MF_00098 .
_:37912 up:source unirule:MF_00098 .
_:37913 up:source unirule:MF_00098 .
_:37914 up:source unirule:MF_00098 .
_:37915 up:source unirule:MF_00098 .
_:37916 up:source unirule:MF_00098 .
_:37917 up:source unirule:MF_00098 .
_:37918 up:source unirule:MF_00098 .
_:37919 up:source unirule:MF_00098 .
_:37920 up:source unirule:MF_00098 .
_:37921 up:source unirule:MF_00098 .
_:37922 up:source unirule:MF_00098 .
_:37923 up:source unirule:MF_00098 .
_:37924 up:source unirule:MF_00098 .
_:37925 up:source unirule:MF_00098 .
_:37926 up:source unirule:MF_00098 .
_:37927 up:source unirule:MF_00098 .
_:37928 up:source unirule:MF_00098 .
_:37929 up:source unirule:MF_00098 .
_:37930 up:source unirule:MF_00098 .
_:37931 up:source unirule:MF_00098 .
_:37932 up:source unirule:MF_00098 .
_:37933 up:source unirule:MF_00098 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0004825 ,
GO:0005524 ,
GO:0005737 ,
GO:0006431 ,
keyword:30 ,
keyword:436 ,
keyword:547 ,
keyword:648 ,
keyword:67 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.1.1.10' ;
up:fullName 'Methionine--tRNA ligase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Methionyl-tRNA synthetase' ;
up:shortName 'MetRS' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'metG' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the attachment of L-methionine to tRNA(Met). Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 1 subfamily.' .
?case9 up:classifiedWith keyword:479 ,
keyword:862 .
?case10 up:classifiedWith keyword:694 ,
keyword:820 .
?pfs12 up:annotation ?annotation13 ,
?annotation19 ,
?annotation25 ,
?annotation31 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:29105 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf chebi:29105 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:29105 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
up:ligand ?ligand34 ;
rdf:type up:Binding_Site_Annotation .
?pfsb32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?ligand34 rdfs:subClassOf chebi:29105 .
?pfs37 up:annotation ?annotation38 .
?annotation38 faldo:begin ?pfsb39 ;
faldo:end ?pfse40 ;
rdf:type up:Motif_Annotation ;
rdfs:comment "'HIGH' region" .
?pfsb39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
rdf:type up:Motif_Annotation ;
rdfs:comment "'KMSKS' region" .
?pfsb45 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfs49 up:annotation ?annotation50 .
?annotation50 faldo:begin ?pfsb51 ;
faldo:end ?pfse52 ;
up:ligand ?ligand53 ;
rdf:type up:Binding_Site_Annotation .
?pfsb51 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?pfse52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?ligand53 rdfs:subClassOf chebi:30616 .
_:37934 a rdf:Statement ;
up:attribution _:37906 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:37935 a rdf:Statement ;
up:attribution _:37907 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:37936 a rdf:Statement ;
up:attribution _:37908 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:37937 a rdf:Statement ;
up:attribution _:37909 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:37938 a rdf:Statement ;
up:attribution _:37910 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:37939 a rdf:Statement ;
up:attribution _:37911 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:37940 a rdf:Statement ;
up:attribution _:37912 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:37941 a rdf:Statement ;
up:attribution _:37913 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:37942 a rdf:Statement ;
up:attribution _:37914 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:30 .
_:37943 a rdf:Statement ;
up:attribution _:37915 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:37944 a rdf:Statement ;
up:attribution _:37916 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:37945 a rdf:Statement ;
up:attribution _:37917 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:37946 a rdf:Statement ;
up:attribution _:37918 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:37947 a rdf:Statement ;
up:attribution _:37919 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:37948 a rdf:Statement ;
up:attribution _:37920 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004825 .
_:37949 a rdf:Statement ;
up:attribution _:37921 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006431 .
_:37950 a rdf:Statement ;
up:attribution _:37922 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:37951 a rdf:Statement ;
up:attribution _:37923 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:37952 a rdf:Statement ;
up:attribution _:37924 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:37953 a rdf:Statement ;
up:attribution _:37925 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:37954 a rdf:Statement ;
up:attribution _:37926 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:820 .
_:37955 a rdf:Statement ;
up:source unirule:MF_00098 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:37956 a rdf:Statement ;
up:attribution _:37927 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:37957 a rdf:Statement ;
up:source unirule:MF_00098 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:37958 a rdf:Statement ;
up:attribution _:37928 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:37959 a rdf:Statement ;
up:source unirule:MF_00098 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:37960 a rdf:Statement ;
up:attribution _:37929 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:37961 a rdf:Statement ;
up:source unirule:MF_00098 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:37962 a rdf:Statement ;
up:attribution _:37930 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:37963 a rdf:Statement ;
up:source unirule:MF_00098 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:37964 a rdf:Statement ;
up:attribution _:37931 ;
rdf:subject ?pfs37 ;
rdf:predicate up:annotation ;
rdf:object ?annotation38 .
_:37965 a rdf:Statement ;
up:source unirule:MF_00098 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:37966 a rdf:Statement ;
up:attribution _:37932 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:37967 a rdf:Statement ;
up:source unirule:MF_00098 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
_:37968 a rdf:Statement ;
up:attribution _:37933 ;
rdf:subject ?pfs49 ;
rdf:predicate up:annotation ;
rdf:object ?annotation50 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00098
#Rule MF_00098 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2025-07-03
VALUES ?supertaxon56 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00098 .
?thisOrganism rdfs:subClassOf+ ?supertaxon56 .
BIND(URI(CONCAT(STR(?this), '#MF_00098a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00098a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00098a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00098a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00098a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00098a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch61 faldo:location ?templateMotifSequenceMatchRegionP0095962 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0095964 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00959MF_0009857 .
?templateMotifSequenceMatchRegionP0095962 faldo:begin ?templateMotifSequenceMatchBeginP0095963 .
?templateMotifSequenceMatchBeginP0095963 faldo:position ?templateMotifSequenceMatchBeginPositionP0095958 ;
faldo:reference isoform:P00959-1 .
?templateMotifSequenceProfileAlignmentOperationP0095964 edam:has_input signature:MF_00098 ;
rdf:type edam:operation_0300 .
?targetMotifMatch65 faldo:location ?targetMotifMatchRegionMatch66 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0009868 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00959MF_0009859 .
?targetMotifMatchRegionMatch66 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0009867 .
?targetMotifMatchRegionMatchBeginMF_0009867 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0009860 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0009868 edam:has_input signature:MF_00098 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00959MF_0009857, 1, (STRLEN(?templateMotifCigarP00959MF_0009857) - STRLEN(REPLACE(?templateMotifCigarP00959MF_0009857, CONCAT('^(?:-*[^-]){', STR(((146 - ?templateMotifSequenceMatchBeginPositionP0095958) + 1)), '}'), '')))), '[a-z]', '')) AS ?step169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00959MF_0009859, 1, (STRLEN(?targetMotifMatchCigarP00959MF_0009859) - STRLEN(REPLACE(?targetMotifMatchCigarP00959MF_0009859, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00959MF_0009859, 1, (STRLEN(?targetMotifMatchCigarP00959MF_0009859) - STRLEN(REPLACE(?targetMotifMatchCigarP00959MF_0009859, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step169), '}'), '')))), '[^-]', ''))) AS ?step270) .
BIND(((?step270 + ?targetMotifMatchRegionMatchBeginPositionMF_0009860) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t71) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00959MF_0009857, 1, (STRLEN(?templateMotifCigarP00959MF_0009857) - STRLEN(REPLACE(?templateMotifCigarP00959MF_0009857, CONCAT('^(?:-*[^-]){', STR(((149 - ?templateMotifSequenceMatchBeginPositionP0095958) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00959MF_0009859, 1, (STRLEN(?targetMotifMatchCigarP00959MF_0009859) - STRLEN(REPLACE(?targetMotifMatchCigarP00959MF_0009859, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00959MF_0009859, 1, (STRLEN(?targetMotifMatchCigarP00959MF_0009859) - STRLEN(REPLACE(?targetMotifMatchCigarP00959MF_0009859, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0009860) - 1) AS ?thisPositionOn23) .
BIND(?thisPositionOn23 AS ?thisPositionOn24) .
BIND(?this AS ?pfs1t74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn23, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00959MF_0009857, 1, (STRLEN(?templateMotifCigarP00959MF_0009857) - STRLEN(REPLACE(?templateMotifCigarP00959MF_0009857, CONCAT('^(?:-*[^-]){', STR(((159 - ?templateMotifSequenceMatchBeginPositionP0095958) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00959MF_0009859, 1, (STRLEN(?targetMotifMatchCigarP00959MF_0009859) - STRLEN(REPLACE(?targetMotifMatchCigarP00959MF_0009859, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00959MF_0009859, 1, (STRLEN(?targetMotifMatchCigarP00959MF_0009859) - STRLEN(REPLACE(?targetMotifMatchCigarP00959MF_0009859, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0009860) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00959MF_0009857, 1, (STRLEN(?templateMotifCigarP00959MF_0009857) - STRLEN(REPLACE(?templateMotifCigarP00959MF_0009857, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionP0095958) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00959MF_0009859, 1, (STRLEN(?targetMotifMatchCigarP00959MF_0009859) - STRLEN(REPLACE(?targetMotifMatchCigarP00959MF_0009859, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00959MF_0009859, 1, (STRLEN(?targetMotifMatchCigarP00959MF_0009859) - STRLEN(REPLACE(?targetMotifMatchCigarP00959MF_0009859, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0009860) - 1) AS ?thisPositionOn35) .
BIND(?thisPositionOn35 AS ?thisPositionOn36) .
BIND(?this AS ?pfs1t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn35, 1) = 'C')) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionP0095986 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0095988 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00959MF_0009881 .
?templateMotifSequenceMatchRegionP0095986 faldo:begin ?templateMotifSequenceMatchBeginP0095987 .
?templateMotifSequenceMatchBeginP0095987 faldo:position ?templateMotifSequenceMatchBeginPositionP0095982 ;
faldo:reference isoform:P00959-1 .
?templateMotifSequenceProfileAlignmentOperationP0095988 edam:has_input signature:MF_00098 ;
rdf:type edam:operation_0300 .
?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0009892 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00959MF_0009883 .
?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0009891 .
?targetMotifMatchRegionMatchBeginMF_0009891 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0009884 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0009892 edam:has_input signature:MF_00098 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00959MF_0009881, 1, (STRLEN(?templateMotifCigarP00959MF_0009881) - STRLEN(REPLACE(?templateMotifCigarP00959MF_0009881, CONCAT('^(?:-*[^-]){', STR(((15 - ?templateMotifSequenceMatchBeginPositionP0095982) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00959MF_0009883, 1, (STRLEN(?targetMotifMatchCigarP00959MF_0009883) - STRLEN(REPLACE(?targetMotifMatchCigarP00959MF_0009883, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00959MF_0009883, 1, (STRLEN(?targetMotifMatchCigarP00959MF_0009883) - STRLEN(REPLACE(?targetMotifMatchCigarP00959MF_0009883, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0009884) - 1) AS ?thisPositionOn41) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00959MF_0009881, 1, (STRLEN(?templateMotifCigarP00959MF_0009881) - STRLEN(REPLACE(?templateMotifCigarP00959MF_0009881, CONCAT('^(?:-*[^-]){', STR(((25 - ?templateMotifSequenceMatchBeginPositionP0095982) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00959MF_0009883, 1, (STRLEN(?targetMotifMatchCigarP00959MF_0009883) - STRLEN(REPLACE(?targetMotifMatchCigarP00959MF_0009883, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00959MF_0009883, 1, (STRLEN(?targetMotifMatchCigarP00959MF_0009883) - STRLEN(REPLACE(?targetMotifMatchCigarP00959MF_0009883, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0009884) - 1) AS ?thisPositionOn42) .
BIND(?this AS ?pfs2t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb39) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse40) .
FILTER (REGEX('[PYA][YT][ARNDCQEGHILKMFPSTWYVBZJUOX]{5)H[LIVFA]G[HNST]', SUBSTR(?thisSequenceValue, ?thisPositionOn41, (?thisPositionOn42 - ?thisPositionOn41)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00098a38')) AS ?annotation38) .
BIND(?this AS ?pfs37) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionP00959103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00959105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00959MF_0009898 .
?templateMotifSequenceMatchRegionP00959103 faldo:begin ?templateMotifSequenceMatchBeginP00959104 .
?templateMotifSequenceMatchBeginP00959104 faldo:position ?templateMotifSequenceMatchBeginPositionP0095999 ;
faldo:reference isoform:P00959-1 .
?templateMotifSequenceProfileAlignmentOperationP00959105 edam:has_input signature:MF_00098 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00098109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00959MF_00098100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00098108 .
?targetMotifMatchRegionMatchBeginMF_00098108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00098101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00098109 edam:has_input signature:MF_00098 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00959MF_0009898, 1, (STRLEN(?templateMotifCigarP00959MF_0009898) - STRLEN(REPLACE(?templateMotifCigarP00959MF_0009898, CONCAT('^(?:-*[^-]){', STR(((333 - ?templateMotifSequenceMatchBeginPositionP0095999) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00959MF_00098100, 1, (STRLEN(?targetMotifMatchCigarP00959MF_00098100) - STRLEN(REPLACE(?targetMotifMatchCigarP00959MF_00098100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00959MF_00098100, 1, (STRLEN(?targetMotifMatchCigarP00959MF_00098100) - STRLEN(REPLACE(?targetMotifMatchCigarP00959MF_00098100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_00098101) - 1) AS ?thisPositionOn47) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00959MF_0009898, 1, (STRLEN(?templateMotifCigarP00959MF_0009898) - STRLEN(REPLACE(?templateMotifCigarP00959MF_0009898, CONCAT('^(?:-*[^-]){', STR(((337 - ?templateMotifSequenceMatchBeginPositionP0095999) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1112) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00959MF_00098100, 1, (STRLEN(?targetMotifMatchCigarP00959MF_00098100) - STRLEN(REPLACE(?targetMotifMatchCigarP00959MF_00098100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00959MF_00098100, 1, (STRLEN(?targetMotifMatchCigarP00959MF_00098100) - STRLEN(REPLACE(?targetMotifMatchCigarP00959MF_00098100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1112), '}'), '')))), '[^-]', ''))) AS ?step2113) .
BIND(((?step2113 + ?targetMotifMatchRegionMatchBeginPositionMF_00098101) - 1) AS ?thisPositionOn48) .
BIND(?this AS ?pfs2t114) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfse46) .
FILTER (REGEX('[KTQ][LIMF][SG][KTS][ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn47, (?thisPositionOn48 - ?thisPositionOn47)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00098a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch119 faldo:location ?templateMotifSequenceMatchRegionP00959120 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00959122 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP00959MF_00098115 .
?templateMotifSequenceMatchRegionP00959120 faldo:begin ?templateMotifSequenceMatchBeginP00959121 .
?templateMotifSequenceMatchBeginP00959121 faldo:position ?templateMotifSequenceMatchBeginPositionP00959116 ;
faldo:reference isoform:P00959-1 .
?templateMotifSequenceProfileAlignmentOperationP00959122 edam:has_input signature:MF_00098 ;
rdf:type edam:operation_0300 .
?targetMotifMatch123 faldo:location ?targetMotifMatchRegionMatch124 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00098126 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP00959MF_00098117 .
?targetMotifMatchRegionMatch124 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00098125 .
?targetMotifMatchRegionMatchBeginMF_00098125 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00098118 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00098126 edam:has_input signature:MF_00098 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00959MF_00098115, 1, (STRLEN(?templateMotifCigarP00959MF_00098115) - STRLEN(REPLACE(?templateMotifCigarP00959MF_00098115, CONCAT('^(?:-*[^-]){', STR(((336 - ?templateMotifSequenceMatchBeginPositionP00959116) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1127) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00959MF_00098117, 1, (STRLEN(?targetMotifMatchCigarP00959MF_00098117) - STRLEN(REPLACE(?targetMotifMatchCigarP00959MF_00098117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00959MF_00098117, 1, (STRLEN(?targetMotifMatchCigarP00959MF_00098117) - STRLEN(REPLACE(?targetMotifMatchCigarP00959MF_00098117, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1127), '}'), '')))), '[^-]', ''))) AS ?step2128) .
BIND(((?step2128 + ?targetMotifMatchRegionMatchBeginPositionMF_00098118) - 1) AS ?thisPositionOn54) .
BIND(?thisPositionOn54 AS ?thisPositionOn55) .
BIND(?this AS ?pfs2t129) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfsb51) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfse52) .
FILTER (REGEX('[KST]', SUBSTR(?thisSequenceValue, ?thisPositionOn54, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00098a50')) AS ?annotation50) .
BIND(?this AS ?pfs49) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag130) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag130, ?UNBOUND_VARIABLE) AS ?case9) .
OPTIONAL {
?this a up:Protein .
?this rdfs:seeAlso .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
?this rdfs:seeAlso .
})) .
BIND(?this AS ?case11) .
}
}
"xsd:string |
