| http://purl.uniprot.org/unirules/MF_00104#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:41116 up:source unirule:MF_00104 .
_:41117 up:source unirule:MF_00104 .
_:41118 up:source unirule:MF_00104 .
_:41119 up:source unirule:MF_00104 .
_:41120 up:source unirule:MF_00104 .
_:41121 up:source unirule:MF_00104 .
_:41122 up:source unirule:MF_00104 .
_:41123 up:source unirule:MF_00104 .
_:41124 up:source unirule:MF_00104 .
_:41125 up:source unirule:MF_00104 .
_:41126 up:source unirule:MF_00104 .
_:41127 up:source unirule:MF_00104 .
_:41128 up:source unirule:MF_00104 .
_:41129 up:source unirule:MF_00104 .
_:41130 up:source unirule:MF_00104 .
_:41131 up:source unirule:MF_00104 .
_:41132 up:source unirule:MF_00104 .
_:41133 up:source unirule:MF_00104 .
_:41134 up:source unirule:MF_00104 .
_:41135 up:source unirule:MF_00104 .
_:41136 up:source unirule:MF_00104 .
_:41137 up:source unirule:MF_00104 .
_:41138 up:source unirule:MF_00104 .
_:41139 up:source unirule:MF_00104 .
_:41140 up:source unirule:MF_00104 .
_:41141 up:source unirule:MF_00104 .
_:41142 up:source unirule:MF_00104 .
_:41143 up:source unirule:MF_00104 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0004525 ,
GO:0005737 ,
GO:0006364 ,
GO:0006397 ,
keyword:255 ,
keyword:378 ,
keyword:507 ,
keyword:540 ,
keyword:698 ,
keyword:819 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.26.3' ;
up:fullName 'Ribonuclease 3' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Ribonuclease III' ;
up:shortName 'RNase III' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'rnc' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?case10 up:classifiedWith keyword:694 ,
keyword:699 .
?case11 up:classifiedWith keyword:460 ,
keyword:479 .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:18420 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:18420 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:18420 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
rdf:type up:Active_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
rdf:type up:Active_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
_:41144 a rdf:Statement ;
up:attribution _:41116 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:41145 a rdf:Statement ;
up:attribution _:41117 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:41146 a rdf:Statement ;
up:attribution _:41118 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:41147 a rdf:Statement ;
up:attribution _:41119 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:41148 a rdf:Statement ;
up:attribution _:41120 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:41149 a rdf:Statement ;
up:attribution _:41121 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:41150 a rdf:Statement ;
up:attribution _:41122 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:41151 a rdf:Statement ;
up:attribution _:41123 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:41152 a rdf:Statement ;
up:attribution _:41124 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:41153 a rdf:Statement ;
up:attribution _:41125 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:41154 a rdf:Statement ;
up:attribution _:41126 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:540 .
_:41155 a rdf:Statement ;
up:attribution _:41127 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:255 .
_:41156 a rdf:Statement ;
up:attribution _:41128 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:507 .
_:41157 a rdf:Statement ;
up:attribution _:41129 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:698 .
_:41158 a rdf:Statement ;
up:attribution _:41130 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:819 .
_:41159 a rdf:Statement ;
up:attribution _:41131 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004525 .
_:41160 a rdf:Statement ;
up:attribution _:41132 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006397 .
_:41161 a rdf:Statement ;
up:attribution _:41133 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006364 .
_:41162 a rdf:Statement ;
up:attribution _:41134 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:41163 a rdf:Statement ;
up:attribution _:41135 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:41164 a rdf:Statement ;
up:attribution _:41136 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:699 .
_:41165 a rdf:Statement ;
up:attribution _:41137 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:41166 a rdf:Statement ;
up:attribution _:41138 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:41167 a rdf:Statement ;
up:source unirule:MF_00104 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:41168 a rdf:Statement ;
up:attribution _:41139 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:41169 a rdf:Statement ;
up:source unirule:MF_00104 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:41170 a rdf:Statement ;
up:attribution _:41140 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:41171 a rdf:Statement ;
up:source unirule:MF_00104 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:41172 a rdf:Statement ;
up:attribution _:41141 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:41173 a rdf:Statement ;
up:source unirule:MF_00104 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:41174 a rdf:Statement ;
up:attribution _:41142 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:41175 a rdf:Statement ;
up:source unirule:MF_00104 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:41176 a rdf:Statement ;
up:attribution _:41143 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00104
#Rule MF_00104 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00104 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00104a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00104a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00104a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00104a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00104a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00104a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00104a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch49 faldo:location ?templateMotifSequenceMatchRegionO6708250 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO6708252 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67082MF_0010445 .
?templateMotifSequenceMatchRegionO6708250 faldo:begin ?templateMotifSequenceMatchBeginO6708251 .
?templateMotifSequenceMatchBeginO6708251 faldo:position ?templateMotifSequenceMatchBeginPositionO6708246 ;
faldo:reference isoform:O67082-1 .
?templateMotifSequenceProfileAlignmentOperationO6708252 edam:has_input signature:MF_00104 ;
rdf:type edam:operation_0300 .
?targetMotifMatch53 faldo:location ?targetMotifMatchRegionMatch54 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0010456 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67082MF_0010447 .
?targetMotifMatchRegionMatch54 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0010455 .
?targetMotifMatchRegionMatchBeginMF_0010455 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0010448 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0010456 edam:has_input signature:MF_00104 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_5) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67082MF_0010445, 1, (STRLEN(?templateMotifCigarO67082MF_0010445) - STRLEN(REPLACE(?templateMotifCigarO67082MF_0010445, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionO6708246) + 1)), '}'), '')))), '[a-z]', '')) AS ?step157) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67082MF_0010447, 1, (STRLEN(?targetMotifMatchCigarO67082MF_0010447) - STRLEN(REPLACE(?targetMotifMatchCigarO67082MF_0010447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67082MF_0010447, 1, (STRLEN(?targetMotifMatchCigarO67082MF_0010447) - STRLEN(REPLACE(?targetMotifMatchCigarO67082MF_0010447, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step157), '}'), '')))), '[^-]', ''))) AS ?step258) .
BIND(((?step258 + ?targetMotifMatchRegionMatchBeginPositionMF_0010448) - 1) AS ?thisPositionOn17) .
BIND(?thisPositionOn17 AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn17, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00104a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch64 faldo:location ?templateMotifSequenceMatchRegionO6708265 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO6708267 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67082MF_0010460 .
?templateMotifSequenceMatchRegionO6708265 faldo:begin ?templateMotifSequenceMatchBeginO6708266 .
?templateMotifSequenceMatchBeginO6708266 faldo:position ?templateMotifSequenceMatchBeginPositionO6708261 ;
faldo:reference isoform:O67082-1 .
?templateMotifSequenceProfileAlignmentOperationO6708267 edam:has_input signature:MF_00104 ;
rdf:type edam:operation_0300 .
?targetMotifMatch68 faldo:location ?targetMotifMatchRegionMatch69 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0010471 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67082MF_0010462 .
?targetMotifMatchRegionMatch69 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0010470 .
?targetMotifMatchRegionMatchBeginMF_0010470 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0010463 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0010471 edam:has_input signature:MF_00104 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_3) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67082MF_0010460, 1, (STRLEN(?templateMotifCigarO67082MF_0010460) - STRLEN(REPLACE(?templateMotifCigarO67082MF_0010460, CONCAT('^(?:-*[^-]){', STR(((40 - ?templateMotifSequenceMatchBeginPositionO6708261) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67082MF_0010462, 1, (STRLEN(?targetMotifMatchCigarO67082MF_0010462) - STRLEN(REPLACE(?targetMotifMatchCigarO67082MF_0010462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67082MF_0010462, 1, (STRLEN(?targetMotifMatchCigarO67082MF_0010462) - STRLEN(REPLACE(?targetMotifMatchCigarO67082MF_0010462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0010463) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs2t74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00104a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch79 faldo:location ?templateMotifSequenceMatchRegionO6708280 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO6708282 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67082MF_0010475 .
?templateMotifSequenceMatchRegionO6708280 faldo:begin ?templateMotifSequenceMatchBeginO6708281 .
?templateMotifSequenceMatchBeginO6708281 faldo:position ?templateMotifSequenceMatchBeginPositionO6708276 ;
faldo:reference isoform:O67082-1 .
?templateMotifSequenceProfileAlignmentOperationO6708282 edam:has_input signature:MF_00104 ;
rdf:type edam:operation_0300 .
?targetMotifMatch83 faldo:location ?targetMotifMatchRegionMatch84 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0010486 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67082MF_0010477 .
?targetMotifMatchRegionMatch84 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0010485 .
?targetMotifMatchRegionMatchBeginMF_0010485 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0010478 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0010486 edam:has_input signature:MF_00104 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_4) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67082MF_0010475, 1, (STRLEN(?templateMotifCigarO67082MF_0010475) - STRLEN(REPLACE(?templateMotifCigarO67082MF_0010475, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionO6708276) + 1)), '}'), '')))), '[a-z]', '')) AS ?step187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67082MF_0010477, 1, (STRLEN(?targetMotifMatchCigarO67082MF_0010477) - STRLEN(REPLACE(?targetMotifMatchCigarO67082MF_0010477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67082MF_0010477, 1, (STRLEN(?targetMotifMatchCigarO67082MF_0010477) - STRLEN(REPLACE(?targetMotifMatchCigarO67082MF_0010477, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step187), '}'), '')))), '[^-]', ''))) AS ?step288) .
BIND(((?step288 + ?targetMotifMatchRegionMatchBeginPositionMF_0010478) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs3t89) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER (REGEX('[DENS]', SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00104a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch94 faldo:location ?templateMotifSequenceMatchRegionO6708295 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO6708297 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67082MF_0010490 .
?templateMotifSequenceMatchRegionO6708295 faldo:begin ?templateMotifSequenceMatchBeginO6708296 .
?templateMotifSequenceMatchBeginO6708296 faldo:position ?templateMotifSequenceMatchBeginPositionO6708291 ;
faldo:reference isoform:O67082-1 .
?templateMotifSequenceProfileAlignmentOperationO6708297 edam:has_input signature:MF_00104 ;
rdf:type edam:operation_0300 .
?targetMotifMatch98 faldo:location ?targetMotifMatchRegionMatch99 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00104101 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67082MF_0010492 .
?targetMotifMatchRegionMatch99 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00104100 .
?targetMotifMatchRegionMatchBeginMF_00104100 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0010493 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00104101 edam:has_input signature:MF_00104 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67082MF_0010490, 1, (STRLEN(?templateMotifCigarO67082MF_0010490) - STRLEN(REPLACE(?templateMotifCigarO67082MF_0010490, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionO6708291) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67082MF_0010492, 1, (STRLEN(?targetMotifMatchCigarO67082MF_0010492) - STRLEN(REPLACE(?targetMotifMatchCigarO67082MF_0010492, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67082MF_0010492, 1, (STRLEN(?targetMotifMatchCigarO67082MF_0010492) - STRLEN(REPLACE(?targetMotifMatchCigarO67082MF_0010492, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0010493) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs4t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00104a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch109 faldo:location ?templateMotifSequenceMatchRegionO67082110 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO67082112 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO67082MF_00104105 .
?templateMotifSequenceMatchRegionO67082110 faldo:begin ?templateMotifSequenceMatchBeginO67082111 .
?templateMotifSequenceMatchBeginO67082111 faldo:position ?templateMotifSequenceMatchBeginPositionO67082106 ;
faldo:reference isoform:O67082-1 .
?templateMotifSequenceProfileAlignmentOperationO67082112 edam:has_input signature:MF_00104 ;
rdf:type edam:operation_0300 .
?targetMotifMatch113 faldo:location ?targetMotifMatchRegionMatch114 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00104116 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO67082MF_00104107 .
?targetMotifMatchRegionMatch114 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00104115 .
?targetMotifMatchRegionMatchBeginMF_00104115 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00104108 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00104116 edam:has_input signature:MF_00104 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO67082MF_00104105, 1, (STRLEN(?templateMotifCigarO67082MF_00104105) - STRLEN(REPLACE(?templateMotifCigarO67082MF_00104105, CONCAT('^(?:-*[^-]){', STR(((110 - ?templateMotifSequenceMatchBeginPositionO67082106) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1117) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO67082MF_00104107, 1, (STRLEN(?targetMotifMatchCigarO67082MF_00104107) - STRLEN(REPLACE(?targetMotifMatchCigarO67082MF_00104107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO67082MF_00104107, 1, (STRLEN(?targetMotifMatchCigarO67082MF_00104107) - STRLEN(REPLACE(?targetMotifMatchCigarO67082MF_00104107, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1117), '}'), '')))), '[^-]', ''))) AS ?step2118) .
BIND(((?step2118 + ?targetMotifMatchRegionMatchBeginPositionMF_00104108) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs4t119) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00104a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this a up:Protein .
?this rdfs:seeAlso .
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag120) .
}
BIND(IF((BOUND(?tagFT_3) || BOUND(?tagFT_4) || BOUND(?tagFT_5)), ?caseWithTag120, ?UNBOUND_VARIABLE) AS ?case11) .
}
"xsd:string |
