| http://purl.uniprot.org/unirules/MF_00130#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:51816 up:source unirule:MF_00130 .
_:51817 up:source unirule:MF_00130 .
_:51818 up:source unirule:MF_00130 .
_:51819 up:source unirule:MF_00130 .
_:51820 up:source unirule:MF_00130 .
_:51821 up:source unirule:MF_00130 .
_:51822 up:source unirule:MF_00130 .
_:51823 up:source unirule:MF_00130 .
_:51824 up:source unirule:MF_00130 .
_:51825 up:source unirule:MF_00130 .
_:51826 up:source unirule:MF_00130 .
_:51827 up:source unirule:MF_00130 .
_:51828 up:source unirule:MF_00130 .
_:51829 up:source unirule:MF_00130 .
_:51830 up:source unirule:MF_00130 .
_:51831 up:source unirule:MF_00130 .
_:51832 up:source unirule:MF_00130 .
_:51833 up:source unirule:MF_00130 .
_:51834 up:source unirule:MF_00130 .
_:51835 up:source unirule:MF_00130 .
_:51836 up:source unirule:MF_00130 .
_:51837 up:source unirule:MF_00130 .
_:51838 up:source unirule:MF_00130 .
_:51839 up:source unirule:MF_00130 .
_:51840 up:source unirule:MF_00130 .
_:51841 up:source unirule:MF_00130 .
_:51842 up:source unirule:MF_00130 .
_:51843 up:source unirule:MF_00130 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0000287 ,
GO:0004519 ,
GO:0005737 ,
GO:0006281 ,
GO:0006310 ,
GO:0007059 ,
keyword:227 ,
keyword:233 ,
keyword:234 ,
keyword:255 ,
keyword:378 ,
keyword:460 ,
keyword:479 ,
keyword:540 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.1.21.10' ;
up:fullName 'Holliday junction resolvase RecU' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Recombination protein U homolog' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'recU' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:enzymeClass .
?annotation6 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Mg(2+) ion per subunit.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the RecU family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:18420 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:18420 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:18420 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:18420 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
_:51844 a rdf:Statement ;
up:attribution _:51816 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:51845 a rdf:Statement ;
up:attribution _:51817 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:51846 a rdf:Statement ;
up:attribution _:51818 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:51847 a rdf:Statement ;
up:attribution _:51819 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:51848 a rdf:Statement ;
up:attribution _:51820 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:51849 a rdf:Statement ;
up:attribution _:51821 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:51850 a rdf:Statement ;
up:attribution _:51822 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:51851 a rdf:Statement ;
up:attribution _:51823 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:51852 a rdf:Statement ;
up:attribution _:51824 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:51853 a rdf:Statement ;
up:attribution _:51825 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:227 .
_:51854 a rdf:Statement ;
up:attribution _:51826 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:234 .
_:51855 a rdf:Statement ;
up:attribution _:51827 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:233 .
_:51856 a rdf:Statement ;
up:attribution _:51828 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:255 .
_:51857 a rdf:Statement ;
up:attribution _:51829 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:51858 a rdf:Statement ;
up:attribution _:51830 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:51859 a rdf:Statement ;
up:attribution _:51831 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:51860 a rdf:Statement ;
up:attribution _:51832 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:540 .
_:51861 a rdf:Statement ;
up:attribution _:51833 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004519 .
_:51862 a rdf:Statement ;
up:attribution _:51834 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:51863 a rdf:Statement ;
up:attribution _:51835 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0007059 .
_:51864 a rdf:Statement ;
up:attribution _:51836 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006310 .
_:51865 a rdf:Statement ;
up:attribution _:51837 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006281 .
_:51866 a rdf:Statement ;
up:attribution _:51838 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:51867 a rdf:Statement ;
up:source unirule:MF_00130 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:51868 a rdf:Statement ;
up:attribution _:51839 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:51869 a rdf:Statement ;
up:source unirule:MF_00130 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:51870 a rdf:Statement ;
up:attribution _:51840 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:51871 a rdf:Statement ;
up:source unirule:MF_00130 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:51872 a rdf:Statement ;
up:attribution _:51841 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:51873 a rdf:Statement ;
up:source unirule:MF_00130 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:51874 a rdf:Statement ;
up:attribution _:51842 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:51875 a rdf:Statement ;
up:source unirule:MF_00130 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:51876 a rdf:Statement ;
up:attribution _:51843 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00130
#Rule MF_00130 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-06-01
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00130 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00130a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00130a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00130a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00130a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00130a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00130a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00130a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch48 faldo:location ?templateMotifSequenceMatchRegionQ5KXY449 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5KXY451 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5KXY4MF_0013044 .
?templateMotifSequenceMatchRegionQ5KXY449 faldo:begin ?templateMotifSequenceMatchBeginQ5KXY450 .
?templateMotifSequenceMatchBeginQ5KXY450 faldo:position ?templateMotifSequenceMatchBeginPositionQ5KXY445 ;
faldo:reference isoform:Q5KXY4-1 .
?templateMotifSequenceProfileAlignmentOperationQ5KXY451 edam:has_input signature:MF_00130 ;
rdf:type edam:operation_0300 .
?targetMotifMatch52 faldo:location ?targetMotifMatchRegionMatch53 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0013055 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5KXY4MF_0013046 .
?targetMotifMatchRegionMatch53 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0013054 .
?targetMotifMatchRegionMatchBeginMF_0013054 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0013047 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0013055 edam:has_input signature:MF_00130 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5KXY4MF_0013044, 1, (STRLEN(?templateMotifCigarQ5KXY4MF_0013044) - STRLEN(REPLACE(?templateMotifCigarQ5KXY4MF_0013044, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionQ5KXY445) + 1)), '}'), '')))), '[a-z]', '')) AS ?step156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5KXY4MF_0013046, 1, (STRLEN(?targetMotifMatchCigarQ5KXY4MF_0013046) - STRLEN(REPLACE(?targetMotifMatchCigarQ5KXY4MF_0013046, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5KXY4MF_0013046, 1, (STRLEN(?targetMotifMatchCigarQ5KXY4MF_0013046) - STRLEN(REPLACE(?targetMotifMatchCigarQ5KXY4MF_0013046, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step156), '}'), '')))), '[^-]', ''))) AS ?step257) .
BIND(((?step257 + ?targetMotifMatchRegionMatchBeginPositionMF_0013047) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t58) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00130a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch63 faldo:location ?templateMotifSequenceMatchRegionQ5KXY464 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5KXY466 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5KXY4MF_0013059 .
?templateMotifSequenceMatchRegionQ5KXY464 faldo:begin ?templateMotifSequenceMatchBeginQ5KXY465 .
?templateMotifSequenceMatchBeginQ5KXY465 faldo:position ?templateMotifSequenceMatchBeginPositionQ5KXY460 ;
faldo:reference isoform:Q5KXY4-1 .
?templateMotifSequenceProfileAlignmentOperationQ5KXY466 edam:has_input signature:MF_00130 ;
rdf:type edam:operation_0300 .
?targetMotifMatch67 faldo:location ?targetMotifMatchRegionMatch68 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0013070 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5KXY4MF_0013061 .
?targetMotifMatchRegionMatch68 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0013069 .
?targetMotifMatchRegionMatchBeginMF_0013069 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0013062 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0013070 edam:has_input signature:MF_00130 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5KXY4MF_0013059, 1, (STRLEN(?templateMotifCigarQ5KXY4MF_0013059) - STRLEN(REPLACE(?templateMotifCigarQ5KXY4MF_0013059, CONCAT('^(?:-*[^-]){', STR(((86 - ?templateMotifSequenceMatchBeginPositionQ5KXY460) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5KXY4MF_0013061, 1, (STRLEN(?targetMotifMatchCigarQ5KXY4MF_0013061) - STRLEN(REPLACE(?targetMotifMatchCigarQ5KXY4MF_0013061, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5KXY4MF_0013061, 1, (STRLEN(?targetMotifMatchCigarQ5KXY4MF_0013061) - STRLEN(REPLACE(?targetMotifMatchCigarQ5KXY4MF_0013061, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0013062) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t73) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00130a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch78 faldo:location ?templateMotifSequenceMatchRegionQ5KXY479 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5KXY481 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5KXY4MF_0013074 .
?templateMotifSequenceMatchRegionQ5KXY479 faldo:begin ?templateMotifSequenceMatchBeginQ5KXY480 .
?templateMotifSequenceMatchBeginQ5KXY480 faldo:position ?templateMotifSequenceMatchBeginPositionQ5KXY475 ;
faldo:reference isoform:Q5KXY4-1 .
?templateMotifSequenceProfileAlignmentOperationQ5KXY481 edam:has_input signature:MF_00130 ;
rdf:type edam:operation_0300 .
?targetMotifMatch82 faldo:location ?targetMotifMatchRegionMatch83 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0013085 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5KXY4MF_0013076 .
?targetMotifMatchRegionMatch83 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0013084 .
?targetMotifMatchRegionMatchBeginMF_0013084 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0013077 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0013085 edam:has_input signature:MF_00130 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5KXY4MF_0013074, 1, (STRLEN(?templateMotifCigarQ5KXY4MF_0013074) - STRLEN(REPLACE(?templateMotifCigarQ5KXY4MF_0013074, CONCAT('^(?:-*[^-]){', STR(((99 - ?templateMotifSequenceMatchBeginPositionQ5KXY475) + 1)), '}'), '')))), '[a-z]', '')) AS ?step186) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5KXY4MF_0013076, 1, (STRLEN(?targetMotifMatchCigarQ5KXY4MF_0013076) - STRLEN(REPLACE(?targetMotifMatchCigarQ5KXY4MF_0013076, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5KXY4MF_0013076, 1, (STRLEN(?targetMotifMatchCigarQ5KXY4MF_0013076) - STRLEN(REPLACE(?targetMotifMatchCigarQ5KXY4MF_0013076, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step186), '}'), '')))), '[^-]', ''))) AS ?step287) .
BIND(((?step287 + ?targetMotifMatchRegionMatchBeginPositionMF_0013077) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t88) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER (REGEX('[DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00130a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch93 faldo:location ?templateMotifSequenceMatchRegionQ5KXY494 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5KXY496 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5KXY4MF_0013089 .
?templateMotifSequenceMatchRegionQ5KXY494 faldo:begin ?templateMotifSequenceMatchBeginQ5KXY495 .
?templateMotifSequenceMatchBeginQ5KXY495 faldo:position ?templateMotifSequenceMatchBeginPositionQ5KXY490 ;
faldo:reference isoform:Q5KXY4-1 .
?templateMotifSequenceProfileAlignmentOperationQ5KXY496 edam:has_input signature:MF_00130 ;
rdf:type edam:operation_0300 .
?targetMotifMatch97 faldo:location ?targetMotifMatchRegionMatch98 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00130100 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5KXY4MF_0013091 .
?targetMotifMatchRegionMatch98 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0013099 .
?targetMotifMatchRegionMatchBeginMF_0013099 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0013092 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00130100 edam:has_input signature:MF_00130 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5KXY4MF_0013089, 1, (STRLEN(?templateMotifCigarQ5KXY4MF_0013089) - STRLEN(REPLACE(?templateMotifCigarQ5KXY4MF_0013089, CONCAT('^(?:-*[^-]){', STR(((118 - ?templateMotifSequenceMatchBeginPositionQ5KXY490) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1101) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5KXY4MF_0013091, 1, (STRLEN(?targetMotifMatchCigarQ5KXY4MF_0013091) - STRLEN(REPLACE(?targetMotifMatchCigarQ5KXY4MF_0013091, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5KXY4MF_0013091, 1, (STRLEN(?targetMotifMatchCigarQ5KXY4MF_0013091) - STRLEN(REPLACE(?targetMotifMatchCigarQ5KXY4MF_0013091, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1101), '}'), '')))), '[^-]', ''))) AS ?step2102) .
BIND(((?step2102 + ?targetMotifMatchRegionMatchBeginPositionMF_0013092) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t103) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_00130a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch108 faldo:location ?templateMotifSequenceMatchRegionQ5KXY4109 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5KXY4111 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ5KXY4MF_00130104 .
?templateMotifSequenceMatchRegionQ5KXY4109 faldo:begin ?templateMotifSequenceMatchBeginQ5KXY4110 .
?templateMotifSequenceMatchBeginQ5KXY4110 faldo:position ?templateMotifSequenceMatchBeginPositionQ5KXY4105 ;
faldo:reference isoform:Q5KXY4-1 .
?templateMotifSequenceProfileAlignmentOperationQ5KXY4111 edam:has_input signature:MF_00130 ;
rdf:type edam:operation_0300 .
?targetMotifMatch112 faldo:location ?targetMotifMatchRegionMatch113 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00130115 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ5KXY4MF_00130106 .
?targetMotifMatchRegionMatch113 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00130114 .
?targetMotifMatchRegionMatchBeginMF_00130114 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00130107 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00130115 edam:has_input signature:MF_00130 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ5KXY4MF_00130104, 1, (STRLEN(?templateMotifCigarQ5KXY4MF_00130104) - STRLEN(REPLACE(?templateMotifCigarQ5KXY4MF_00130104, CONCAT('^(?:-*[^-]){', STR(((101 - ?templateMotifSequenceMatchBeginPositionQ5KXY4105) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1116) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ5KXY4MF_00130106, 1, (STRLEN(?targetMotifMatchCigarQ5KXY4MF_00130106) - STRLEN(REPLACE(?targetMotifMatchCigarQ5KXY4MF_00130106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ5KXY4MF_00130106, 1, (STRLEN(?targetMotifMatchCigarQ5KXY4MF_00130106) - STRLEN(REPLACE(?targetMotifMatchCigarQ5KXY4MF_00130106, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1116), '}'), '')))), '[^-]', ''))) AS ?step2117) .
BIND(((?step2117 + ?targetMotifMatchRegionMatchBeginPositionMF_00130107) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t118) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00130a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
}
"xsd:string |
