| http://purl.uniprot.org/unirules/MF_00156#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:61938 up:source unirule:MF_00156 .
_:61939 up:source unirule:MF_00156 .
_:61940 up:source unirule:MF_00156 .
_:61941 up:source unirule:MF_00156 .
_:61942 up:source unirule:MF_00156 .
_:61943 up:source unirule:MF_00156 .
_:61944 up:source unirule:MF_00156 .
_:61945 up:source unirule:MF_00156 .
_:61946 up:source unirule:MF_00156 .
_:61947 up:source unirule:MF_00156 .
_:61948 up:source unirule:MF_00156 .
_:61949 up:source unirule:MF_00156 .
_:61950 up:source unirule:MF_00156 .
_:61951 up:source unirule:MF_00156 .
_:61952 up:source unirule:MF_00156 .
_:61953 up:source unirule:MF_00156 .
_:61954 up:source unirule:MF_00156 .
_:61955 up:source unirule:MF_00156 .
_:61956 up:source unirule:MF_00156 .
_:61957 up:source unirule:MF_00156 .
_:61958 up:source unirule:MF_00156 .
_:61959 up:source unirule:MF_00156 .
_:61960 up:source unirule:MF_00156 .
_:61961 up:source unirule:MF_00156 .
_:61962 up:source unirule:MF_00156 .
_:61963 up:source unirule:MF_00156 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ,
?annotation10 ;
up:classifiedWith GO:0003864 ,
GO:0005737 ,
keyword:460 ,
keyword:479 ,
keyword:808 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.2.11' ;
up:fullName '3-methyl-2-oxobutanoate hydroxymethyltransferase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Ketopantoate hydroxymethyltransferase' ;
up:shortName 'KPHMT' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'panB' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 Mg(2+) ion per subunit.' .
?annotation7 a up:Subunit_Annotation ;
rdfs:comment 'Homodecamer; pentamer of dimers.' .
?annotation8 a up:Subcellular_Location_Annotation .
?annotation8li9 up:cellularComponent .
?annotation10 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the PanB family.' .
?case11 up:classifiedWith GO:0015937 ,
keyword:173 .
?case12 up:classifiedWith GO:0015940 ,
keyword:566 .
?pfs13 up:annotation ?annotation14 .
?annotation14 faldo:begin ?pfsb15 ;
faldo:end ?pfse16 ;
up:ligand ?ligand17 ;
rdf:type up:Binding_Site_Annotation .
?pfsb15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?ligand17 rdfs:subClassOf chebi:11851 .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton acceptor' .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:18420 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:18420 .
?pfs40 up:annotation ?annotation41 .
?annotation41 faldo:begin ?pfsb42 ;
faldo:end ?pfse43 ;
up:ligand ?ligand44 ;
rdf:type up:Binding_Site_Annotation .
?pfsb42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand44 rdfs:subClassOf chebi:18420 .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:11851 .
?pfs54 up:annotation ?annotation55 .
?annotation55 faldo:begin ?pfsb56 ;
faldo:end ?pfse57 ;
up:ligand ?ligand58 ;
rdf:type up:Binding_Site_Annotation .
?pfsb56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?pfse57 faldo:position ?thisPositionOn60 ;
rdf:type faldo:ExactPosition .
?ligand58 rdfs:subClassOf chebi:11851 .
_:61964 a rdf:Statement ;
up:attribution _:61938 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:61965 a rdf:Statement ;
up:attribution _:61939 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:61966 a rdf:Statement ;
up:attribution _:61940 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:61967 a rdf:Statement ;
up:attribution _:61941 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:61968 a rdf:Statement ;
up:attribution _:61942 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:61969 a rdf:Statement ;
up:attribution _:61943 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:61970 a rdf:Statement ;
up:attribution _:61944 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:61971 a rdf:Statement ;
up:attribution _:61945 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:61972 a rdf:Statement ;
up:attribution _:61946 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation10 .
_:61973 a rdf:Statement ;
up:attribution _:61947 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:61974 a rdf:Statement ;
up:attribution _:61948 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:61975 a rdf:Statement ;
up:attribution _:61949 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:61976 a rdf:Statement ;
up:attribution _:61950 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:61977 a rdf:Statement ;
up:attribution _:61951 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0003864 .
_:61978 a rdf:Statement ;
up:attribution _:61952 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:61979 a rdf:Statement ;
up:attribution _:61953 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:173 .
_:61980 a rdf:Statement ;
up:attribution _:61954 ;
rdf:subject ?case11 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015937 .
_:61981 a rdf:Statement ;
up:attribution _:61955 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:566 .
_:61982 a rdf:Statement ;
up:attribution _:61956 ;
rdf:subject ?case12 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0015940 .
_:61983 a rdf:Statement ;
up:source unirule:MF_00156 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:61984 a rdf:Statement ;
up:attribution _:61957 ;
rdf:subject ?pfs13 ;
rdf:predicate up:annotation ;
rdf:object ?annotation14 .
_:61985 a rdf:Statement ;
up:source unirule:MF_00156 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:61986 a rdf:Statement ;
up:attribution _:61958 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:61987 a rdf:Statement ;
up:source unirule:MF_00156 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:61988 a rdf:Statement ;
up:attribution _:61959 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:61989 a rdf:Statement ;
up:source unirule:MF_00156 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:61990 a rdf:Statement ;
up:attribution _:61960 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:61991 a rdf:Statement ;
up:source unirule:MF_00156 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:61992 a rdf:Statement ;
up:attribution _:61961 ;
rdf:subject ?pfs40 ;
rdf:predicate up:annotation ;
rdf:object ?annotation41 .
_:61993 a rdf:Statement ;
up:source unirule:MF_00156 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:61994 a rdf:Statement ;
up:attribution _:61962 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:61995 a rdf:Statement ;
up:source unirule:MF_00156 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
_:61996 a rdf:Statement ;
up:attribution _:61963 ;
rdf:subject ?pfs54 ;
rdf:predicate up:annotation ;
rdf:object ?annotation55 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00156
#Rule MF_00156 Created by:? on:2005-02-28 Modified by:Elisabeth Coudert on:2025-04-22
VALUES ?supertaxon61 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00156 .
?thisOrganism rdfs:subClassOf+ ?supertaxon61 .
BIND(URI(CONCAT(STR(?this), '#MF_00156a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00156a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00156a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00156a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00156a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00156a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00156a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00156a10')) AS ?annotation10) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch66 faldo:location ?templateMotifSequenceMatchRegionP3105767 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3105769 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31057MF_0015662 .
?templateMotifSequenceMatchRegionP3105767 faldo:begin ?templateMotifSequenceMatchBeginP3105768 .
?templateMotifSequenceMatchBeginP3105768 faldo:position ?templateMotifSequenceMatchBeginPositionP3105763 ;
faldo:reference isoform:P31057-1 .
?templateMotifSequenceProfileAlignmentOperationP3105769 edam:has_input signature:MF_00156 ;
rdf:type edam:operation_0300 .
?targetMotifMatch70 faldo:location ?targetMotifMatchRegionMatch71 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0015673 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31057MF_0015664 .
?targetMotifMatchRegionMatch71 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0015672 .
?targetMotifMatchRegionMatchBeginMF_0015672 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0015665 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0015673 edam:has_input signature:MF_00156 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31057MF_0015662, 1, (STRLEN(?templateMotifCigarP31057MF_0015662) - STRLEN(REPLACE(?templateMotifCigarP31057MF_0015662, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP3105763) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31057MF_0015664, 1, (STRLEN(?targetMotifMatchCigarP31057MF_0015664) - STRLEN(REPLACE(?targetMotifMatchCigarP31057MF_0015664, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31057MF_0015664, 1, (STRLEN(?targetMotifMatchCigarP31057MF_0015664) - STRLEN(REPLACE(?targetMotifMatchCigarP31057MF_0015664, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0015665) - 1) AS ?thisPositionOn18) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31057MF_0015662, 1, (STRLEN(?templateMotifCigarP31057MF_0015662) - STRLEN(REPLACE(?templateMotifCigarP31057MF_0015662, CONCAT('^(?:-*[^-]){', STR(((46 - ?templateMotifSequenceMatchBeginPositionP3105763) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31057MF_0015664, 1, (STRLEN(?targetMotifMatchCigarP31057MF_0015664) - STRLEN(REPLACE(?targetMotifMatchCigarP31057MF_0015664, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31057MF_0015664, 1, (STRLEN(?targetMotifMatchCigarP31057MF_0015664) - STRLEN(REPLACE(?targetMotifMatchCigarP31057MF_0015664, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0015665) - 1) AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb15) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse16) .
FILTER ((BOUND(?thisPositionOn18) && BOUND(?thisPositionOn19))) .
BIND(URI(CONCAT(STR(?this), '#MF_00156a14')) AS ?annotation14) .
BIND(?this AS ?pfs13) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionP3105784 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3105786 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31057MF_0015679 .
?templateMotifSequenceMatchRegionP3105784 faldo:begin ?templateMotifSequenceMatchBeginP3105785 .
?templateMotifSequenceMatchBeginP3105785 faldo:position ?templateMotifSequenceMatchBeginPositionP3105780 ;
faldo:reference isoform:P31057-1 .
?templateMotifSequenceProfileAlignmentOperationP3105786 edam:has_input signature:MF_00156 ;
rdf:type edam:operation_0300 .
?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0015690 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31057MF_0015681 .
?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0015689 .
?targetMotifMatchRegionMatchBeginMF_0015689 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0015682 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0015690 edam:has_input signature:MF_00156 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31057MF_0015679, 1, (STRLEN(?templateMotifCigarP31057MF_0015679) - STRLEN(REPLACE(?templateMotifCigarP31057MF_0015679, CONCAT('^(?:-*[^-]){', STR(((181 - ?templateMotifSequenceMatchBeginPositionP3105780) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31057MF_0015681, 1, (STRLEN(?targetMotifMatchCigarP31057MF_0015681) - STRLEN(REPLACE(?targetMotifMatchCigarP31057MF_0015681, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31057MF_0015681, 1, (STRLEN(?targetMotifMatchCigarP31057MF_0015681) - STRLEN(REPLACE(?targetMotifMatchCigarP31057MF_0015681, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0015682) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00156a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP3105799 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31057101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31057MF_0015694 .
?templateMotifSequenceMatchRegionP3105799 faldo:begin ?templateMotifSequenceMatchBeginP31057100 .
?templateMotifSequenceMatchBeginP31057100 faldo:position ?templateMotifSequenceMatchBeginPositionP3105795 ;
faldo:reference isoform:P31057-1 .
?templateMotifSequenceProfileAlignmentOperationP31057101 edam:has_input signature:MF_00156 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00156105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31057MF_0015696 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00156104 .
?targetMotifMatchRegionMatchBeginMF_00156104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0015697 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00156105 edam:has_input signature:MF_00156 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31057MF_0015694, 1, (STRLEN(?templateMotifCigarP31057MF_0015694) - STRLEN(REPLACE(?templateMotifCigarP31057MF_0015694, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP3105795) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31057MF_0015696, 1, (STRLEN(?targetMotifMatchCigarP31057MF_0015696) - STRLEN(REPLACE(?targetMotifMatchCigarP31057MF_0015696, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31057MF_0015696, 1, (STRLEN(?targetMotifMatchCigarP31057MF_0015696) - STRLEN(REPLACE(?targetMotifMatchCigarP31057MF_0015696, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0015697) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t108) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00156a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch113 faldo:location ?templateMotifSequenceMatchRegionP31057114 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31057116 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31057MF_00156109 .
?templateMotifSequenceMatchRegionP31057114 faldo:begin ?templateMotifSequenceMatchBeginP31057115 .
?templateMotifSequenceMatchBeginP31057115 faldo:position ?templateMotifSequenceMatchBeginPositionP31057110 ;
faldo:reference isoform:P31057-1 .
?templateMotifSequenceProfileAlignmentOperationP31057116 edam:has_input signature:MF_00156 ;
rdf:type edam:operation_0300 .
?targetMotifMatch117 faldo:location ?targetMotifMatchRegionMatch118 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00156120 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31057MF_00156111 .
?targetMotifMatchRegionMatch118 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00156119 .
?targetMotifMatchRegionMatchBeginMF_00156119 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00156112 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00156120 edam:has_input signature:MF_00156 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31057MF_00156109, 1, (STRLEN(?templateMotifCigarP31057MF_00156109) - STRLEN(REPLACE(?templateMotifCigarP31057MF_00156109, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionP31057110) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1121) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31057MF_00156111, 1, (STRLEN(?targetMotifMatchCigarP31057MF_00156111) - STRLEN(REPLACE(?targetMotifMatchCigarP31057MF_00156111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31057MF_00156111, 1, (STRLEN(?targetMotifMatchCigarP31057MF_00156111) - STRLEN(REPLACE(?targetMotifMatchCigarP31057MF_00156111, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1121), '}'), '')))), '[^-]', ''))) AS ?step2122) .
BIND(((?step2122 + ?targetMotifMatchRegionMatchBeginPositionMF_00156112) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs1t123) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00156a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch128 faldo:location ?templateMotifSequenceMatchRegionP31057129 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31057131 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31057MF_00156124 .
?templateMotifSequenceMatchRegionP31057129 faldo:begin ?templateMotifSequenceMatchBeginP31057130 .
?templateMotifSequenceMatchBeginP31057130 faldo:position ?templateMotifSequenceMatchBeginPositionP31057125 ;
faldo:reference isoform:P31057-1 .
?templateMotifSequenceProfileAlignmentOperationP31057131 edam:has_input signature:MF_00156 ;
rdf:type edam:operation_0300 .
?targetMotifMatch132 faldo:location ?targetMotifMatchRegionMatch133 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00156135 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31057MF_00156126 .
?targetMotifMatchRegionMatch133 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00156134 .
?targetMotifMatchRegionMatchBeginMF_00156134 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00156127 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00156135 edam:has_input signature:MF_00156 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31057MF_00156124, 1, (STRLEN(?templateMotifCigarP31057MF_00156124) - STRLEN(REPLACE(?templateMotifCigarP31057MF_00156124, CONCAT('^(?:-*[^-]){', STR(((114 - ?templateMotifSequenceMatchBeginPositionP31057125) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1136) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31057MF_00156126, 1, (STRLEN(?targetMotifMatchCigarP31057MF_00156126) - STRLEN(REPLACE(?targetMotifMatchCigarP31057MF_00156126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31057MF_00156126, 1, (STRLEN(?targetMotifMatchCigarP31057MF_00156126) - STRLEN(REPLACE(?targetMotifMatchCigarP31057MF_00156126, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1136), '}'), '')))), '[^-]', ''))) AS ?step2137) .
BIND(((?step2137 + ?targetMotifMatchRegionMatchBeginPositionMF_00156127) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t138) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb42) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse43) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00156a41')) AS ?annotation41) .
BIND(?this AS ?pfs40) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch143 faldo:location ?templateMotifSequenceMatchRegionP31057144 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31057146 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31057MF_00156139 .
?templateMotifSequenceMatchRegionP31057144 faldo:begin ?templateMotifSequenceMatchBeginP31057145 .
?templateMotifSequenceMatchBeginP31057145 faldo:position ?templateMotifSequenceMatchBeginPositionP31057140 ;
faldo:reference isoform:P31057-1 .
?templateMotifSequenceProfileAlignmentOperationP31057146 edam:has_input signature:MF_00156 ;
rdf:type edam:operation_0300 .
?targetMotifMatch147 faldo:location ?targetMotifMatchRegionMatch148 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00156150 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31057MF_00156141 .
?targetMotifMatchRegionMatch148 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00156149 .
?targetMotifMatchRegionMatchBeginMF_00156149 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00156142 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00156150 edam:has_input signature:MF_00156 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31057MF_00156139, 1, (STRLEN(?templateMotifCigarP31057MF_00156139) - STRLEN(REPLACE(?templateMotifCigarP31057MF_00156139, CONCAT('^(?:-*[^-]){', STR(((84 - ?templateMotifSequenceMatchBeginPositionP31057140) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1151) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31057MF_00156141, 1, (STRLEN(?targetMotifMatchCigarP31057MF_00156141) - STRLEN(REPLACE(?targetMotifMatchCigarP31057MF_00156141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31057MF_00156141, 1, (STRLEN(?targetMotifMatchCigarP31057MF_00156141) - STRLEN(REPLACE(?targetMotifMatchCigarP31057MF_00156141, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1151), '}'), '')))), '[^-]', ''))) AS ?step2152) .
BIND(((?step2152 + ?targetMotifMatchRegionMatchBeginPositionMF_00156142) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t153) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00156a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch158 faldo:location ?templateMotifSequenceMatchRegionP31057159 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP31057161 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP31057MF_00156154 .
?templateMotifSequenceMatchRegionP31057159 faldo:begin ?templateMotifSequenceMatchBeginP31057160 .
?templateMotifSequenceMatchBeginP31057160 faldo:position ?templateMotifSequenceMatchBeginPositionP31057155 ;
faldo:reference isoform:P31057-1 .
?templateMotifSequenceProfileAlignmentOperationP31057161 edam:has_input signature:MF_00156 ;
rdf:type edam:operation_0300 .
?targetMotifMatch162 faldo:location ?targetMotifMatchRegionMatch163 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00156165 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP31057MF_00156156 .
?targetMotifMatchRegionMatch163 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00156164 .
?targetMotifMatchRegionMatchBeginMF_00156164 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00156157 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00156165 edam:has_input signature:MF_00156 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP31057MF_00156154, 1, (STRLEN(?templateMotifCigarP31057MF_00156154) - STRLEN(REPLACE(?templateMotifCigarP31057MF_00156154, CONCAT('^(?:-*[^-]){', STR(((112 - ?templateMotifSequenceMatchBeginPositionP31057155) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1166) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP31057MF_00156156, 1, (STRLEN(?targetMotifMatchCigarP31057MF_00156156) - STRLEN(REPLACE(?targetMotifMatchCigarP31057MF_00156156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP31057MF_00156156, 1, (STRLEN(?targetMotifMatchCigarP31057MF_00156156) - STRLEN(REPLACE(?targetMotifMatchCigarP31057MF_00156156, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1166), '}'), '')))), '[^-]', ''))) AS ?step2167) .
BIND(((?step2167 + ?targetMotifMatchRegionMatchBeginPositionMF_00156157) - 1) AS ?thisPositionOn59) .
BIND(?thisPositionOn59 AS ?thisPositionOn60) .
BIND(?this AS ?pfs1t168) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfsb56) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn60))) AS ?pfse57) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn59, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00156a55')) AS ?annotation55) .
BIND(?this AS ?pfs54) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case11) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case12) .
}
}
"xsd:string |
