| http://purl.uniprot.org/unirules/MF_00184#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:74697 up:source unirule:MF_00184 .
_:74698 up:source unirule:MF_00184 .
_:74699 up:source unirule:MF_00184 .
_:74700 up:source unirule:MF_00184 .
_:74701 up:source unirule:MF_00184 .
_:74702 up:source unirule:MF_00184 .
_:74703 up:source unirule:MF_00184 .
_:74704 up:source unirule:MF_00184 .
_:74705 up:source unirule:MF_00184 .
_:74706 up:source unirule:MF_00184 .
_:74707 up:source unirule:MF_00184 .
_:74708 up:source unirule:MF_00184 .
_:74709 up:source unirule:MF_00184 .
_:74710 up:source unirule:MF_00184 .
_:74711 up:source unirule:MF_00184 .
_:74712 up:source unirule:MF_00184 .
_:74713 up:source unirule:MF_00184 .
_:74714 up:source unirule:MF_00184 .
_:74715 up:source unirule:MF_00184 .
_:74716 up:source unirule:MF_00184 .
_:74717 up:source unirule:MF_00184 .
_:74718 up:source unirule:MF_00184 .
_:74719 up:source unirule:MF_00184 .
_:74720 up:source unirule:MF_00184 .
_:74721 up:source unirule:MF_00184 .
_:74722 up:source unirule:MF_00184 .
_:74723 up:source unirule:MF_00184 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0004829 ,
GO:0005524 ,
GO:0005737 ,
GO:0006435 ,
keyword:30 ,
keyword:436 ,
keyword:547 ,
keyword:648 ,
keyword:67 ,
keyword:694 ,
keyword:820 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.1.1.3' ;
up:fullName 'Threonine--tRNA ligase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Threonyl-tRNA synthetase' ;
up:shortName 'ThrRS' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'thrS' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-II aminoacyl-tRNA synthetase family.' .
?case9 up:classifiedWith keyword:7 .
?case10 up:classifiedWith keyword:479 ,
keyword:862 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:29105 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:29105 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29105 .
?pfs30 up:annotation ?annotation31 .
?annotation31 faldo:begin ?pfsb32 ;
faldo:end ?pfse33 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse33 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
rdf:type up:Region_Annotation ;
rdfs:comment 'Catalytic' .
?pfsb38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
_:74724 a rdf:Statement ;
up:attribution _:74697 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:74725 a rdf:Statement ;
up:attribution _:74698 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:74726 a rdf:Statement ;
up:attribution _:74699 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:74727 a rdf:Statement ;
up:attribution _:74700 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:74728 a rdf:Statement ;
up:attribution _:74701 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:74729 a rdf:Statement ;
up:attribution _:74702 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:74730 a rdf:Statement ;
up:attribution _:74703 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:74731 a rdf:Statement ;
up:attribution _:74704 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:30 .
_:74732 a rdf:Statement ;
up:attribution _:74705 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:74733 a rdf:Statement ;
up:attribution _:74706 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:74734 a rdf:Statement ;
up:attribution _:74707 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:74735 a rdf:Statement ;
up:attribution _:74708 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:74736 a rdf:Statement ;
up:attribution _:74709 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:74737 a rdf:Statement ;
up:attribution _:74710 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:74738 a rdf:Statement ;
up:attribution _:74711 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:820 .
_:74739 a rdf:Statement ;
up:attribution _:74712 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:74740 a rdf:Statement ;
up:attribution _:74713 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004829 .
_:74741 a rdf:Statement ;
up:attribution _:74714 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006435 .
_:74742 a rdf:Statement ;
up:attribution _:74715 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:74743 a rdf:Statement ;
up:attribution _:74716 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:74744 a rdf:Statement ;
up:attribution _:74717 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:74745 a rdf:Statement ;
up:attribution _:74718 ;
rdf:subject ?case10 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:74746 a rdf:Statement ;
up:source unirule:MF_00184 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:74747 a rdf:Statement ;
up:attribution _:74719 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:74748 a rdf:Statement ;
up:source unirule:MF_00184 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:74749 a rdf:Statement ;
up:attribution _:74720 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:74750 a rdf:Statement ;
up:source unirule:MF_00184 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:74751 a rdf:Statement ;
up:attribution _:74721 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:74752 a rdf:Statement ;
up:source unirule:MF_00184 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:74753 a rdf:Statement ;
up:attribution _:74722 ;
rdf:subject ?pfs30 ;
rdf:predicate up:annotation ;
rdf:object ?annotation31 .
_:74754 a rdf:Statement ;
up:source unirule:MF_00184 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:74755 a rdf:Statement ;
up:attribution _:74723 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00184
#Rule MF_00184 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon42 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00184 .
?thisOrganism rdfs:subClassOf+ ?supertaxon42 .
BIND(URI(CONCAT(STR(?this), '#MF_00184a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00184a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00184a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00184a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00184a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00184a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch47 faldo:location ?templateMotifSequenceMatchRegionP0A8M348 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8M350 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A8M3MF_0018443 .
?templateMotifSequenceMatchRegionP0A8M348 faldo:begin ?templateMotifSequenceMatchBeginP0A8M349 .
?templateMotifSequenceMatchBeginP0A8M349 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8M344 ;
faldo:reference isoform:P0A8M3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A8M350 edam:has_input signature:MF_00184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch51 faldo:location ?targetMotifMatchRegionMatch52 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0018454 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A8M3MF_0018445 .
?targetMotifMatchRegionMatch52 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0018453 .
?targetMotifMatchRegionMatchBeginMF_0018453 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0018446 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0018454 edam:has_input signature:MF_00184 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8M3MF_0018443, 1, (STRLEN(?templateMotifCigarP0A8M3MF_0018443) - STRLEN(REPLACE(?templateMotifCigarP0A8M3MF_0018443, CONCAT('^(?:-*[^-]){', STR(((334 - ?templateMotifSequenceMatchBeginPositionP0A8M344) + 1)), '}'), '')))), '[a-z]', '')) AS ?step155) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8M3MF_0018445, 1, (STRLEN(?targetMotifMatchCigarP0A8M3MF_0018445) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8M3MF_0018445, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8M3MF_0018445, 1, (STRLEN(?targetMotifMatchCigarP0A8M3MF_0018445) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8M3MF_0018445, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step155), '}'), '')))), '[^-]', ''))) AS ?step256) .
BIND(((?step256 + ?targetMotifMatchRegionMatchBeginPositionMF_0018446) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8M3MF_0018443, 1, (STRLEN(?templateMotifCigarP0A8M3MF_0018443) - STRLEN(REPLACE(?templateMotifCigarP0A8M3MF_0018443, CONCAT('^(?:-*[^-]){', STR(((385 - ?templateMotifSequenceMatchBeginPositionP0A8M344) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8M3MF_0018445, 1, (STRLEN(?targetMotifMatchCigarP0A8M3MF_0018445) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8M3MF_0018445, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8M3MF_0018445, 1, (STRLEN(?targetMotifMatchCigarP0A8M3MF_0018445) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8M3MF_0018445, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) .
BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0018446) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8M3MF_0018443, 1, (STRLEN(?templateMotifCigarP0A8M3MF_0018443) - STRLEN(REPLACE(?templateMotifCigarP0A8M3MF_0018443, CONCAT('^(?:-*[^-]){', STR(((511 - ?templateMotifSequenceMatchBeginPositionP0A8M344) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8M3MF_0018445, 1, (STRLEN(?targetMotifMatchCigarP0A8M3MF_0018445) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8M3MF_0018445, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8M3MF_0018445, 1, (STRLEN(?targetMotifMatchCigarP0A8M3MF_0018445) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8M3MF_0018445, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) .
BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0018446) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t63) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'H')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionP0A8M370 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8M372 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A8M3MF_0018465 .
?templateMotifSequenceMatchRegionP0A8M370 faldo:begin ?templateMotifSequenceMatchBeginP0A8M371 .
?templateMotifSequenceMatchBeginP0A8M371 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8M366 ;
faldo:reference isoform:P0A8M3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A8M372 edam:has_input signature:MF_00184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0018476 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A8M3MF_0018467 .
?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0018475 .
?targetMotifMatchRegionMatchBeginMF_0018475 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0018468 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0018476 edam:has_input signature:MF_00184 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagacet) .
VALUES ?supertaxon64 {taxon:561 taxon:620}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon64 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8M3MF_0018465, 1, (STRLEN(?templateMotifCigarP0A8M3MF_0018465) - STRLEN(REPLACE(?templateMotifCigarP0A8M3MF_0018465, CONCAT('^(?:-*[^-]){', STR(((286 - ?templateMotifSequenceMatchBeginPositionP0A8M366) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8M3MF_0018467, 1, (STRLEN(?targetMotifMatchCigarP0A8M3MF_0018467) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8M3MF_0018467, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8M3MF_0018467, 1, (STRLEN(?targetMotifMatchCigarP0A8M3MF_0018467) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8M3MF_0018467, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0018468) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs2t79) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb32) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse33) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00184a31')) AS ?annotation31) .
BIND(?this AS ?pfs30) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch84 faldo:location ?templateMotifSequenceMatchRegionP0A8M385 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A8M387 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A8M3MF_0018480 .
?templateMotifSequenceMatchRegionP0A8M385 faldo:begin ?templateMotifSequenceMatchBeginP0A8M386 .
?templateMotifSequenceMatchBeginP0A8M386 faldo:position ?templateMotifSequenceMatchBeginPositionP0A8M381 ;
faldo:reference isoform:P0A8M3-1 .
?templateMotifSequenceProfileAlignmentOperationP0A8M387 edam:has_input signature:MF_00184 ;
rdf:type edam:operation_0300 .
?targetMotifMatch88 faldo:location ?targetMotifMatchRegionMatch89 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0018491 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A8M3MF_0018482 .
?targetMotifMatchRegionMatch89 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0018490 .
?targetMotifMatchRegionMatchBeginMF_0018490 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0018483 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0018491 edam:has_input signature:MF_00184 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8M3MF_0018480, 1, (STRLEN(?templateMotifCigarP0A8M3MF_0018480) - STRLEN(REPLACE(?templateMotifCigarP0A8M3MF_0018480, CONCAT('^(?:-*[^-]){', STR(((243 - ?templateMotifSequenceMatchBeginPositionP0A8M381) + 1)), '}'), '')))), '[a-z]', '')) AS ?step192) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8M3MF_0018482, 1, (STRLEN(?targetMotifMatchCigarP0A8M3MF_0018482) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8M3MF_0018482, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8M3MF_0018482, 1, (STRLEN(?targetMotifMatchCigarP0A8M3MF_0018482) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8M3MF_0018482, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step192), '}'), '')))), '[^-]', ''))) AS ?step293) .
BIND(((?step293 + ?targetMotifMatchRegionMatchBeginPositionMF_0018483) - 1) AS ?thisPositionOn40) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A8M3MF_0018480, 1, (STRLEN(?templateMotifCigarP0A8M3MF_0018480) - STRLEN(REPLACE(?templateMotifCigarP0A8M3MF_0018480, CONCAT('^(?:-*[^-]){', STR(((534 - ?templateMotifSequenceMatchBeginPositionP0A8M381) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A8M3MF_0018482, 1, (STRLEN(?targetMotifMatchCigarP0A8M3MF_0018482) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8M3MF_0018482, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A8M3MF_0018482, 1, (STRLEN(?targetMotifMatchCigarP0A8M3MF_0018482) - STRLEN(REPLACE(?targetMotifMatchCigarP0A8M3MF_0018482, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0018483) - 1) AS ?thisPositionOn41) .
BIND(?this AS ?pfs3t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse39) .
FILTER ((BOUND(?thisPositionOn40) && BOUND(?thisPositionOn41))) .
BIND(URI(CONCAT(STR(?this), '#MF_00184a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag97) .
}
BIND(IF(BOUND(?tagacet), ?caseWithTag97, ?UNBOUND_VARIABLE) AS ?case9) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag98) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag98, ?UNBOUND_VARIABLE) AS ?case10) .
}
"xsd:string |
