| http://purl.uniprot.org/unirules/MF_00190#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:77862 up:source unirule:MF_00190 .
_:77863 up:source unirule:MF_00190 .
_:77864 up:source unirule:MF_00190 .
_:77865 up:source unirule:MF_00190 .
_:77866 up:source unirule:MF_00190 .
_:77867 up:source unirule:MF_00190 .
_:77868 up:source unirule:MF_00190 .
_:77869 up:source unirule:MF_00190 .
_:77870 up:source unirule:MF_00190 .
_:77871 up:source unirule:MF_00190 .
_:77872 up:source unirule:MF_00190 .
_:77873 up:source unirule:MF_00190 .
_:77874 up:source unirule:MF_00190 .
_:77875 up:source unirule:MF_00190 .
_:77876 up:source unirule:MF_00190 .
_:77877 up:source unirule:MF_00190 .
_:77878 up:source unirule:MF_00190 .
_:77879 up:source unirule:MF_00190 .
_:77880 up:source unirule:MF_00190 .
_:77881 up:source unirule:MF_00190 .
_:77882 up:source unirule:MF_00190 .
_:77883 up:source unirule:MF_00190 .
_:77884 up:source unirule:MF_00190 .
_:77885 up:source unirule:MF_00190 .
_:77886 up:source unirule:MF_00190 .
_:77887 up:source unirule:MF_00190 .
_:77888 up:source unirule:MF_00190 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ;
up:classifiedWith GO:0005886 ,
GO:0008654 ,
GO:0016780 ,
keyword:1003 ,
keyword:1133 ,
keyword:1208 ,
keyword:443 ,
keyword:444 ,
keyword:472 ,
keyword:594 ,
keyword:808 ,
keyword:812 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.7.8.-' ;
up:fullName 'Cardiolipin synthase A' ;
up:shortName 'CL synthase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'clsA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the phospholipase D family. Cardiolipin synthase subfamily. ClsA sub-subfamily.' .
?case6 up:classifiedWith keyword:997 .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
rdf:type up:Active_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn12 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfs14 up:annotation ?annotation15 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
rdf:type up:Active_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfs20 up:annotation ?annotation21 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
rdf:type up:Active_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
rdf:type up:Active_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfs32 up:annotation ?annotation33 .
?annotation33 faldo:begin ?pfsb34 ;
faldo:end ?pfse35 ;
rdf:type up:Active_Site_Annotation .
?pfsb34 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Active_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?sam44 up:classifiedWith keyword:1133 ,
keyword:472 ,
keyword:812 .
?transmembrane45 faldo:begin ?transmembraneb46 ;
faldo:end ?transmembranee47 .
?transmembraneb46 faldo:position ?transmembranebp48 .
?transmembranee47 faldo:position ?transmembraneep49 .
?keyword50 up:range ?transmembrane45 .
?keyword51 up:range ?transmembrane45 .
?keyword52 up:range ?transmembrane45 .
_:77889 a rdf:Statement ;
up:attribution _:77862 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:77890 a rdf:Statement ;
up:attribution _:77863 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:77891 a rdf:Statement ;
up:attribution _:77864 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:77892 a rdf:Statement ;
up:attribution _:77865 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:77893 a rdf:Statement ;
up:attribution _:77866 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:77894 a rdf:Statement ;
up:attribution _:77867 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1003 .
_:77895 a rdf:Statement ;
up:attribution _:77868 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:444 .
_:77896 a rdf:Statement ;
up:attribution _:77869 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:443 .
_:77897 a rdf:Statement ;
up:attribution _:77870 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:77898 a rdf:Statement ;
up:attribution _:77871 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:594 .
_:77899 a rdf:Statement ;
up:attribution _:77872 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1208 .
_:77900 a rdf:Statement ;
up:attribution _:77873 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:77901 a rdf:Statement ;
up:attribution _:77874 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:77902 a rdf:Statement ;
up:attribution _:77875 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
_:77903 a rdf:Statement ;
up:attribution _:77876 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016780 .
_:77904 a rdf:Statement ;
up:attribution _:77877 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008654 .
_:77905 a rdf:Statement ;
up:attribution _:77878 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005886 .
_:77906 a rdf:Statement ;
up:attribution _:77879 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:997 .
_:77907 a rdf:Statement ;
up:source unirule:MF_00190 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:77908 a rdf:Statement ;
up:attribution _:77880 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:77909 a rdf:Statement ;
up:source unirule:MF_00190 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:77910 a rdf:Statement ;
up:attribution _:77881 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:77911 a rdf:Statement ;
up:source unirule:MF_00190 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:77912 a rdf:Statement ;
up:attribution _:77882 ;
rdf:subject ?pfs20 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:77913 a rdf:Statement ;
up:source unirule:MF_00190 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:77914 a rdf:Statement ;
up:attribution _:77883 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:77915 a rdf:Statement ;
up:source unirule:MF_00190 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:77916 a rdf:Statement ;
up:attribution _:77884 ;
rdf:subject ?pfs32 ;
rdf:predicate up:annotation ;
rdf:object ?annotation33 .
_:77917 a rdf:Statement ;
up:source unirule:MF_00190 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:77918 a rdf:Statement ;
up:attribution _:77885 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:77919 a rdf:Statement ;
up:attribution _:77886 ;
rdf:subject ?sam44 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:472 .
_:77920 a rdf:Statement ;
up:attribution _:77887 ;
rdf:subject ?sam44 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:812 .
_:77921 a rdf:Statement ;
up:attribution _:77888 ;
rdf:subject ?sam44 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1133 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00190
#Rule MF_00190 Created by:? on:2005-02-28 Modified by:Elisabeth Coudert on:2024-08-27
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00190 .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(URI(CONCAT(STR(?this), '#MF_00190a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00190a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00190a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00190a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch57 faldo:location ?templateMotifSequenceMatchRegionP0A6H858 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6H860 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6H8MF_0019053 .
?templateMotifSequenceMatchRegionP0A6H858 faldo:begin ?templateMotifSequenceMatchBeginP0A6H859 .
?templateMotifSequenceMatchBeginP0A6H859 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6H854 ;
faldo:reference isoform:P0A6H8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6H860 edam:has_input signature:MF_00190 ;
rdf:type edam:operation_0300 .
?targetMotifMatch61 faldo:location ?targetMotifMatchRegionMatch62 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0019064 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6H8MF_0019055 .
?targetMotifMatchRegionMatch62 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0019063 .
?targetMotifMatchRegionMatchBeginMF_0019063 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0019056 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0019064 edam:has_input signature:MF_00190 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6H8MF_0019053, 1, (STRLEN(?templateMotifCigarP0A6H8MF_0019053) - STRLEN(REPLACE(?templateMotifCigarP0A6H8MF_0019053, CONCAT('^(?:-*[^-]){', STR(((224 - ?templateMotifSequenceMatchBeginPositionP0A6H854) + 1)), '}'), '')))), '[a-z]', '')) AS ?step165) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6H8MF_0019055, 1, (STRLEN(?targetMotifMatchCigarP0A6H8MF_0019055) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6H8MF_0019055, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6H8MF_0019055, 1, (STRLEN(?targetMotifMatchCigarP0A6H8MF_0019055) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6H8MF_0019055, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step165), '}'), '')))), '[^-]', ''))) AS ?step266) .
BIND(((?step266 + ?targetMotifMatchRegionMatchBeginPositionMF_0019056) - 1) AS ?thisPositionOn12) .
BIND(?thisPositionOn12 AS ?thisPositionOn13) .
BIND(?this AS ?pfs1t67) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn12))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfse11) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn12, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00190a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch72 faldo:location ?templateMotifSequenceMatchRegionP0A6H873 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6H875 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6H8MF_0019068 .
?templateMotifSequenceMatchRegionP0A6H873 faldo:begin ?templateMotifSequenceMatchBeginP0A6H874 .
?templateMotifSequenceMatchBeginP0A6H874 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6H869 ;
faldo:reference isoform:P0A6H8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6H875 edam:has_input signature:MF_00190 ;
rdf:type edam:operation_0300 .
?targetMotifMatch76 faldo:location ?targetMotifMatchRegionMatch77 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0019079 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6H8MF_0019070 .
?targetMotifMatchRegionMatch77 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0019078 .
?targetMotifMatchRegionMatchBeginMF_0019078 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0019071 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0019079 edam:has_input signature:MF_00190 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6H8MF_0019068, 1, (STRLEN(?templateMotifCigarP0A6H8MF_0019068) - STRLEN(REPLACE(?templateMotifCigarP0A6H8MF_0019068, CONCAT('^(?:-*[^-]){', STR(((226 - ?templateMotifSequenceMatchBeginPositionP0A6H869) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6H8MF_0019070, 1, (STRLEN(?targetMotifMatchCigarP0A6H8MF_0019070) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6H8MF_0019070, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6H8MF_0019070, 1, (STRLEN(?targetMotifMatchCigarP0A6H8MF_0019070) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6H8MF_0019070, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0019071) - 1) AS ?thisPositionOn18) .
BIND(?thisPositionOn18 AS ?thisPositionOn19) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn18, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00190a15')) AS ?annotation15) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP0A6H888 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6H890 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6H8MF_0019083 .
?templateMotifSequenceMatchRegionP0A6H888 faldo:begin ?templateMotifSequenceMatchBeginP0A6H889 .
?templateMotifSequenceMatchBeginP0A6H889 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6H884 ;
faldo:reference isoform:P0A6H8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6H890 edam:has_input signature:MF_00190 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0019094 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6H8MF_0019085 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0019093 .
?targetMotifMatchRegionMatchBeginMF_0019093 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0019086 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0019094 edam:has_input signature:MF_00190 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6H8MF_0019083, 1, (STRLEN(?templateMotifCigarP0A6H8MF_0019083) - STRLEN(REPLACE(?templateMotifCigarP0A6H8MF_0019083, CONCAT('^(?:-*[^-]){', STR(((231 - ?templateMotifSequenceMatchBeginPositionP0A6H884) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6H8MF_0019085, 1, (STRLEN(?targetMotifMatchCigarP0A6H8MF_0019085) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6H8MF_0019085, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6H8MF_0019085, 1, (STRLEN(?targetMotifMatchCigarP0A6H8MF_0019085) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6H8MF_0019085, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0019086) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00190a21')) AS ?annotation21) .
BIND(?this AS ?pfs20) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionP0A6H8103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6H8105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6H8MF_0019098 .
?templateMotifSequenceMatchRegionP0A6H8103 faldo:begin ?templateMotifSequenceMatchBeginP0A6H8104 .
?templateMotifSequenceMatchBeginP0A6H8104 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6H899 ;
faldo:reference isoform:P0A6H8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6H8105 edam:has_input signature:MF_00190 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00190109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6H8MF_00190100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00190108 .
?targetMotifMatchRegionMatchBeginMF_00190108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00190101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00190109 edam:has_input signature:MF_00190 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6H8MF_0019098, 1, (STRLEN(?templateMotifCigarP0A6H8MF_0019098) - STRLEN(REPLACE(?templateMotifCigarP0A6H8MF_0019098, CONCAT('^(?:-*[^-]){', STR(((404 - ?templateMotifSequenceMatchBeginPositionP0A6H899) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6H8MF_00190100, 1, (STRLEN(?targetMotifMatchCigarP0A6H8MF_00190100) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6H8MF_00190100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6H8MF_00190100, 1, (STRLEN(?targetMotifMatchCigarP0A6H8MF_00190100) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6H8MF_00190100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_00190101) - 1) AS ?thisPositionOn30) .
BIND(?thisPositionOn30 AS ?thisPositionOn31) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn30, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00190a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch117 faldo:location ?templateMotifSequenceMatchRegionP0A6H8118 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6H8120 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6H8MF_00190113 .
?templateMotifSequenceMatchRegionP0A6H8118 faldo:begin ?templateMotifSequenceMatchBeginP0A6H8119 .
?templateMotifSequenceMatchBeginP0A6H8119 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6H8114 ;
faldo:reference isoform:P0A6H8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6H8120 edam:has_input signature:MF_00190 ;
rdf:type edam:operation_0300 .
?targetMotifMatch121 faldo:location ?targetMotifMatchRegionMatch122 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00190124 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6H8MF_00190115 .
?targetMotifMatchRegionMatch122 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00190123 .
?targetMotifMatchRegionMatchBeginMF_00190123 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00190116 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00190124 edam:has_input signature:MF_00190 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6H8MF_00190113, 1, (STRLEN(?templateMotifCigarP0A6H8MF_00190113) - STRLEN(REPLACE(?templateMotifCigarP0A6H8MF_00190113, CONCAT('^(?:-*[^-]){', STR(((406 - ?templateMotifSequenceMatchBeginPositionP0A6H8114) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1125) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6H8MF_00190115, 1, (STRLEN(?targetMotifMatchCigarP0A6H8MF_00190115) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6H8MF_00190115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6H8MF_00190115, 1, (STRLEN(?targetMotifMatchCigarP0A6H8MF_00190115) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6H8MF_00190115, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1125), '}'), '')))), '[^-]', ''))) AS ?step2126) .
BIND(((?step2126 + ?targetMotifMatchRegionMatchBeginPositionMF_00190116) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t127) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb34) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse35) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00190a33')) AS ?annotation33) .
BIND(?this AS ?pfs32) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch132 faldo:location ?templateMotifSequenceMatchRegionP0A6H8133 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6H8135 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6H8MF_00190128 .
?templateMotifSequenceMatchRegionP0A6H8133 faldo:begin ?templateMotifSequenceMatchBeginP0A6H8134 .
?templateMotifSequenceMatchBeginP0A6H8134 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6H8129 ;
faldo:reference isoform:P0A6H8-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6H8135 edam:has_input signature:MF_00190 ;
rdf:type edam:operation_0300 .
?targetMotifMatch136 faldo:location ?targetMotifMatchRegionMatch137 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00190139 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6H8MF_00190130 .
?targetMotifMatchRegionMatch137 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00190138 .
?targetMotifMatchRegionMatchBeginMF_00190138 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00190131 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00190139 edam:has_input signature:MF_00190 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6H8MF_00190128, 1, (STRLEN(?templateMotifCigarP0A6H8MF_00190128) - STRLEN(REPLACE(?templateMotifCigarP0A6H8MF_00190128, CONCAT('^(?:-*[^-]){', STR(((411 - ?templateMotifSequenceMatchBeginPositionP0A6H8129) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1140) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6H8MF_00190130, 1, (STRLEN(?targetMotifMatchCigarP0A6H8MF_00190130) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6H8MF_00190130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6H8MF_00190130, 1, (STRLEN(?targetMotifMatchCigarP0A6H8MF_00190130) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6H8MF_00190130, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1140), '}'), '')))), '[^-]', ''))) AS ?step2141) .
BIND(((?step2141 + ?targetMotifMatchRegionMatchBeginPositionMF_00190131) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t142) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00190a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:proteome .
} UNION {
?this up:proteome ?p143 .
?p143 skos:narrower .
}
BIND(?this AS ?case6) .
}
OPTIONAL {
?this a up:Protein .
{
FILTER (! (EXISTS {
{
?this up:proteome .
} UNION {
?this up:proteome ?p144 .
?p144 skos:narrower .
}
})) .
} UNION {
{
?this up:proteome .
} UNION {
?this up:proteome ?p145 .
?p145 skos:narrower .
}
}
BIND(?this AS ?case7) .
}
OPTIONAL {
?this up:annotation ?samtransmembrane146 ;
up:sequence ?thisSequence .
?samtransmembrane146 up:range ?samtransmembraner147 ;
rdf:type up:Transmembrane_Annotation .
?samtransmembraner147 faldo:begin ?samtransmembraneb148 ;
faldo:end ?samtransmembranee149 .
?samtransmembraneb148 faldo:position ?samtransmembranebp150 ;
faldo:reference ?thisSequence .
?samtransmembranee149 faldo:position ?samtransmembraneep151 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam44) .
}
BIND(URI(CONCAT(STR(?this), '#MF_00190a50')) AS ?keyword50) .
BIND(URI(CONCAT(STR(?this), '#MF_00190a51')) AS ?keyword51) .
BIND(URI(CONCAT(STR(?this), '#MF_00190a52')) AS ?keyword52) .
}
"xsd:string |
