| http://purl.uniprot.org/unirules/MF_00218#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:91388 up:source unirule:MF_00218 .
_:91389 up:source unirule:MF_00218 .
_:91390 up:source unirule:MF_00218 .
_:91391 up:source unirule:MF_00218 .
_:91392 up:source unirule:MF_00218 .
_:91393 up:source unirule:MF_00218 .
_:91394 up:source unirule:MF_00218 .
_:91395 up:source unirule:MF_00218 .
_:91396 up:source unirule:MF_00218 .
_:91397 up:source unirule:MF_00218 .
_:91398 up:source unirule:MF_00218 .
_:91399 up:source unirule:MF_00218 .
_:91400 up:source unirule:MF_00218 .
_:91401 up:source unirule:MF_00218 .
_:91402 up:source unirule:MF_00218 .
_:91403 up:source unirule:MF_00218 .
_:91404 up:source unirule:MF_00218 .
_:91405 up:source unirule:MF_00218 .
_:91406 up:source unirule:MF_00218 .
_:91407 up:source unirule:MF_00218 .
_:91408 up:source unirule:MF_00218 .
_:91409 up:source unirule:MF_00218 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ,
?annotation9 ;
up:classifiedWith GO:0004853 ,
GO:0005737 ,
GO:0006782 ,
keyword:210 ,
keyword:456 ,
keyword:627 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.1.1.37' ;
up:fullName 'Uroporphyrinogen decarboxylase' ;
up:shortName 'UPD' ,
'URO-D' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'hemE' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 4/4.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Subcellular_Location_Annotation .
?annotation7li8 up:cellularComponent .
?annotation9 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the uroporphyrinogen decarboxylase family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf ?molecule15 .
?molecule15 rdfs:label 'substrate' .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf ?molecule23 .
?molecule23 rdfs:label 'substrate' .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf ?molecule31 .
?molecule31 rdfs:label 'substrate' .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf ?molecule39 .
?molecule39 rdfs:label 'substrate' .
?pfs42 up:annotation ?annotation43 .
?annotation43 faldo:begin ?pfsb44 ;
faldo:end ?pfse45 ;
up:ligand ?ligand46 ;
rdf:type up:Binding_Site_Annotation .
?pfsb44 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse45 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand46 rdfs:subClassOf ?molecule47 .
?molecule47 rdfs:label 'substrate' .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf ?molecule55 .
?molecule55 rdfs:label 'substrate' .
?pfs58 up:annotation ?annotation59 .
?annotation59 faldo:begin ?pfsb60 ;
faldo:end ?pfse61 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Transition state stabilizer' .
?pfsb60 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse61 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
_:91410 a rdf:Statement ;
up:attribution _:91388 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:91411 a rdf:Statement ;
up:attribution _:91389 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:91412 a rdf:Statement ;
up:attribution _:91390 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:91413 a rdf:Statement ;
up:attribution _:91391 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:91414 a rdf:Statement ;
up:attribution _:91392 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:91415 a rdf:Statement ;
up:attribution _:91393 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:91416 a rdf:Statement ;
up:attribution _:91394 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:91417 a rdf:Statement ;
up:attribution _:91395 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:91418 a rdf:Statement ;
up:attribution _:91396 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:91419 a rdf:Statement ;
up:attribution _:91397 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:91420 a rdf:Statement ;
up:attribution _:91398 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:210 .
_:91421 a rdf:Statement ;
up:attribution _:91399 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:627 .
_:91422 a rdf:Statement ;
up:attribution _:91400 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004853 .
_:91423 a rdf:Statement ;
up:attribution _:91401 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006782 .
_:91424 a rdf:Statement ;
up:attribution _:91402 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:91425 a rdf:Statement ;
up:source unirule:MF_00218 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:91426 a rdf:Statement ;
up:attribution _:91403 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:91427 a rdf:Statement ;
up:source unirule:MF_00218 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:91428 a rdf:Statement ;
up:attribution _:91404 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:91429 a rdf:Statement ;
up:source unirule:MF_00218 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:91430 a rdf:Statement ;
up:attribution _:91405 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:91431 a rdf:Statement ;
up:source unirule:MF_00218 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:91432 a rdf:Statement ;
up:attribution _:91406 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:91433 a rdf:Statement ;
up:source unirule:MF_00218 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:91434 a rdf:Statement ;
up:attribution _:91407 ;
rdf:subject ?pfs42 ;
rdf:predicate up:annotation ;
rdf:object ?annotation43 .
_:91435 a rdf:Statement ;
up:source unirule:MF_00218 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:91436 a rdf:Statement ;
up:attribution _:91408 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:91437 a rdf:Statement ;
up:source unirule:MF_00218 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
_:91438 a rdf:Statement ;
up:attribution _:91409 ;
rdf:subject ?pfs58 ;
rdf:predicate up:annotation ;
rdf:object ?annotation59 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00218
#Rule MF_00218 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon64 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00218 .
?thisOrganism rdfs:subClassOf+ ?supertaxon64 .
BIND(URI(CONCAT(STR(?this), '#MF_00218a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00218a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00218a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00218a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00218a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00218a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00218a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch69 faldo:location ?templateMotifSequenceMatchRegionP3239570 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3239572 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32395MF_0021865 .
?templateMotifSequenceMatchRegionP3239570 faldo:begin ?templateMotifSequenceMatchBeginP3239571 .
?templateMotifSequenceMatchBeginP3239571 faldo:position ?templateMotifSequenceMatchBeginPositionP3239566 ;
faldo:reference isoform:P32395-1 .
?templateMotifSequenceProfileAlignmentOperationP3239572 edam:has_input signature:MF_00218 ;
rdf:type edam:operation_0300 .
?targetMotifMatch73 faldo:location ?targetMotifMatchRegionMatch74 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0021876 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32395MF_0021867 .
?targetMotifMatchRegionMatch74 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0021875 .
?targetMotifMatchRegionMatchBeginMF_0021875 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0021868 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0021876 edam:has_input signature:MF_00218 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32395MF_0021865, 1, (STRLEN(?templateMotifCigarP32395MF_0021865) - STRLEN(REPLACE(?templateMotifCigarP32395MF_0021865, CONCAT('^(?:-*[^-]){', STR(((29 - ?templateMotifSequenceMatchBeginPositionP3239566) + 1)), '}'), '')))), '[a-z]', '')) AS ?step177) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32395MF_0021867, 1, (STRLEN(?targetMotifMatchCigarP32395MF_0021867) - STRLEN(REPLACE(?targetMotifMatchCigarP32395MF_0021867, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32395MF_0021867, 1, (STRLEN(?targetMotifMatchCigarP32395MF_0021867) - STRLEN(REPLACE(?targetMotifMatchCigarP32395MF_0021867, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step177), '}'), '')))), '[^-]', ''))) AS ?step278) .
BIND(((?step278 + ?targetMotifMatchRegionMatchBeginPositionMF_0021868) - 1) AS ?thisPositionOn16) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32395MF_0021865, 1, (STRLEN(?templateMotifCigarP32395MF_0021865) - STRLEN(REPLACE(?templateMotifCigarP32395MF_0021865, CONCAT('^(?:-*[^-]){', STR(((33 - ?templateMotifSequenceMatchBeginPositionP3239566) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32395MF_0021867, 1, (STRLEN(?targetMotifMatchCigarP32395MF_0021867) - STRLEN(REPLACE(?targetMotifMatchCigarP32395MF_0021867, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32395MF_0021867, 1, (STRLEN(?targetMotifMatchCigarP32395MF_0021867) - STRLEN(REPLACE(?targetMotifMatchCigarP32395MF_0021867, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0021868) - 1) AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse13) .
FILTER (REGEX('R[ARNDCQEGHILKMFPSTWYVBZJUOX][AVS][ARNDCQEGHILKMFPSTWYVBZJUOX]R', SUBSTR(?thisSequenceValue, ?thisPositionOn16, (?thisPositionOn17 - ?thisPositionOn16)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00218a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch86 faldo:location ?templateMotifSequenceMatchRegionP3239587 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3239589 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32395MF_0021882 .
?templateMotifSequenceMatchRegionP3239587 faldo:begin ?templateMotifSequenceMatchBeginP3239588 .
?templateMotifSequenceMatchBeginP3239588 faldo:position ?templateMotifSequenceMatchBeginPositionP3239583 ;
faldo:reference isoform:P32395-1 .
?templateMotifSequenceProfileAlignmentOperationP3239589 edam:has_input signature:MF_00218 ;
rdf:type edam:operation_0300 .
?targetMotifMatch90 faldo:location ?targetMotifMatchRegionMatch91 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0021893 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32395MF_0021884 .
?targetMotifMatchRegionMatch91 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0021892 .
?targetMotifMatchRegionMatchBeginMF_0021892 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0021885 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0021893 edam:has_input signature:MF_00218 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32395MF_0021882, 1, (STRLEN(?templateMotifCigarP32395MF_0021882) - STRLEN(REPLACE(?templateMotifCigarP32395MF_0021882, CONCAT('^(?:-*[^-]){', STR(((48 - ?templateMotifSequenceMatchBeginPositionP3239583) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32395MF_0021884, 1, (STRLEN(?targetMotifMatchCigarP32395MF_0021884) - STRLEN(REPLACE(?targetMotifMatchCigarP32395MF_0021884, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32395MF_0021884, 1, (STRLEN(?targetMotifMatchCigarP32395MF_0021884) - STRLEN(REPLACE(?targetMotifMatchCigarP32395MF_0021884, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0021885) - 1) AS ?thisPositionOn24) .
BIND(?thisPositionOn24 AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, 1) = 'F')) .
BIND(URI(CONCAT(STR(?this), '#MF_00218a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch101 faldo:location ?templateMotifSequenceMatchRegionP32395102 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32395104 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32395MF_0021897 .
?templateMotifSequenceMatchRegionP32395102 faldo:begin ?templateMotifSequenceMatchBeginP32395103 .
?templateMotifSequenceMatchBeginP32395103 faldo:position ?templateMotifSequenceMatchBeginPositionP3239598 ;
faldo:reference isoform:P32395-1 .
?templateMotifSequenceProfileAlignmentOperationP32395104 edam:has_input signature:MF_00218 ;
rdf:type edam:operation_0300 .
?targetMotifMatch105 faldo:location ?targetMotifMatchRegionMatch106 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00218108 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32395MF_0021899 .
?targetMotifMatchRegionMatch106 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00218107 .
?targetMotifMatchRegionMatchBeginMF_00218107 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00218100 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00218108 edam:has_input signature:MF_00218 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32395MF_0021897, 1, (STRLEN(?templateMotifCigarP32395MF_0021897) - STRLEN(REPLACE(?templateMotifCigarP32395MF_0021897, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionP3239598) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1109) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32395MF_0021899, 1, (STRLEN(?targetMotifMatchCigarP32395MF_0021899) - STRLEN(REPLACE(?targetMotifMatchCigarP32395MF_0021899, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32395MF_0021899, 1, (STRLEN(?targetMotifMatchCigarP32395MF_0021899) - STRLEN(REPLACE(?targetMotifMatchCigarP32395MF_0021899, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1109), '}'), '')))), '[^-]', ''))) AS ?step2110) .
BIND(((?step2110 + ?targetMotifMatchRegionMatchBeginPositionMF_00218100) - 1) AS ?thisPositionOn32) .
BIND(?thisPositionOn32 AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t111) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn32, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00218a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch116 faldo:location ?templateMotifSequenceMatchRegionP32395117 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32395119 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32395MF_00218112 .
?templateMotifSequenceMatchRegionP32395117 faldo:begin ?templateMotifSequenceMatchBeginP32395118 .
?templateMotifSequenceMatchBeginP32395118 faldo:position ?templateMotifSequenceMatchBeginPositionP32395113 ;
faldo:reference isoform:P32395-1 .
?templateMotifSequenceProfileAlignmentOperationP32395119 edam:has_input signature:MF_00218 ;
rdf:type edam:operation_0300 .
?targetMotifMatch120 faldo:location ?targetMotifMatchRegionMatch121 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00218123 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32395MF_00218114 .
?targetMotifMatchRegionMatch121 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00218122 .
?targetMotifMatchRegionMatchBeginMF_00218122 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00218115 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00218123 edam:has_input signature:MF_00218 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32395MF_00218112, 1, (STRLEN(?templateMotifCigarP32395MF_00218112) - STRLEN(REPLACE(?templateMotifCigarP32395MF_00218112, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionP32395113) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1124) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32395MF_00218114, 1, (STRLEN(?targetMotifMatchCigarP32395MF_00218114) - STRLEN(REPLACE(?targetMotifMatchCigarP32395MF_00218114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32395MF_00218114, 1, (STRLEN(?targetMotifMatchCigarP32395MF_00218114) - STRLEN(REPLACE(?targetMotifMatchCigarP32395MF_00218114, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1124), '}'), '')))), '[^-]', ''))) AS ?step2125) .
BIND(((?step2125 + ?targetMotifMatchRegionMatchBeginPositionMF_00218115) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t126) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse37) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00218a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch131 faldo:location ?templateMotifSequenceMatchRegionP32395132 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32395134 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32395MF_00218127 .
?templateMotifSequenceMatchRegionP32395132 faldo:begin ?templateMotifSequenceMatchBeginP32395133 .
?templateMotifSequenceMatchBeginP32395133 faldo:position ?templateMotifSequenceMatchBeginPositionP32395128 ;
faldo:reference isoform:P32395-1 .
?templateMotifSequenceProfileAlignmentOperationP32395134 edam:has_input signature:MF_00218 ;
rdf:type edam:operation_0300 .
?targetMotifMatch135 faldo:location ?targetMotifMatchRegionMatch136 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00218138 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32395MF_00218129 .
?targetMotifMatchRegionMatch136 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00218137 .
?targetMotifMatchRegionMatchBeginMF_00218137 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00218130 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00218138 edam:has_input signature:MF_00218 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32395MF_00218127, 1, (STRLEN(?templateMotifCigarP32395MF_00218127) - STRLEN(REPLACE(?templateMotifCigarP32395MF_00218127, CONCAT('^(?:-*[^-]){', STR(((209 - ?templateMotifSequenceMatchBeginPositionP32395128) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1139) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32395MF_00218129, 1, (STRLEN(?targetMotifMatchCigarP32395MF_00218129) - STRLEN(REPLACE(?targetMotifMatchCigarP32395MF_00218129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32395MF_00218129, 1, (STRLEN(?targetMotifMatchCigarP32395MF_00218129) - STRLEN(REPLACE(?targetMotifMatchCigarP32395MF_00218129, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1139), '}'), '')))), '[^-]', ''))) AS ?step2140) .
BIND(((?step2140 + ?targetMotifMatchRegionMatchBeginPositionMF_00218130) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t141) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb44) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse45) .
FILTER (REGEX('[ST]', SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00218a43')) AS ?annotation43) .
BIND(?this AS ?pfs42) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch146 faldo:location ?templateMotifSequenceMatchRegionP32395147 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32395149 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32395MF_00218142 .
?templateMotifSequenceMatchRegionP32395147 faldo:begin ?templateMotifSequenceMatchBeginP32395148 .
?templateMotifSequenceMatchBeginP32395148 faldo:position ?templateMotifSequenceMatchBeginPositionP32395143 ;
faldo:reference isoform:P32395-1 .
?templateMotifSequenceProfileAlignmentOperationP32395149 edam:has_input signature:MF_00218 ;
rdf:type edam:operation_0300 .
?targetMotifMatch150 faldo:location ?targetMotifMatchRegionMatch151 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00218153 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32395MF_00218144 .
?targetMotifMatchRegionMatch151 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00218152 .
?targetMotifMatchRegionMatchBeginMF_00218152 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00218145 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00218153 edam:has_input signature:MF_00218 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32395MF_00218142, 1, (STRLEN(?templateMotifCigarP32395MF_00218142) - STRLEN(REPLACE(?templateMotifCigarP32395MF_00218142, CONCAT('^(?:-*[^-]){', STR(((322 - ?templateMotifSequenceMatchBeginPositionP32395143) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1154) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32395MF_00218144, 1, (STRLEN(?targetMotifMatchCigarP32395MF_00218144) - STRLEN(REPLACE(?targetMotifMatchCigarP32395MF_00218144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32395MF_00218144, 1, (STRLEN(?targetMotifMatchCigarP32395MF_00218144) - STRLEN(REPLACE(?targetMotifMatchCigarP32395MF_00218144, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1154), '}'), '')))), '[^-]', ''))) AS ?step2155) .
BIND(((?step2155 + ?targetMotifMatchRegionMatchBeginPositionMF_00218145) - 1) AS ?thisPositionOn56) .
BIND(?thisPositionOn56 AS ?thisPositionOn57) .
BIND(?this AS ?pfs1t156) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn56, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00218a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch161 faldo:location ?templateMotifSequenceMatchRegionP32395162 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP32395164 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP32395MF_00218157 .
?templateMotifSequenceMatchRegionP32395162 faldo:begin ?templateMotifSequenceMatchBeginP32395163 .
?templateMotifSequenceMatchBeginP32395163 faldo:position ?templateMotifSequenceMatchBeginPositionP32395158 ;
faldo:reference isoform:P32395-1 .
?templateMotifSequenceProfileAlignmentOperationP32395164 edam:has_input signature:MF_00218 ;
rdf:type edam:operation_0300 .
?targetMotifMatch165 faldo:location ?targetMotifMatchRegionMatch166 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00218168 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP32395MF_00218159 .
?targetMotifMatchRegionMatch166 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00218167 .
?targetMotifMatchRegionMatchBeginMF_00218167 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00218160 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00218168 edam:has_input signature:MF_00218 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP32395MF_00218157, 1, (STRLEN(?templateMotifCigarP32395MF_00218157) - STRLEN(REPLACE(?templateMotifCigarP32395MF_00218157, CONCAT('^(?:-*[^-]){', STR(((78 - ?templateMotifSequenceMatchBeginPositionP32395158) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1169) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP32395MF_00218159, 1, (STRLEN(?targetMotifMatchCigarP32395MF_00218159) - STRLEN(REPLACE(?targetMotifMatchCigarP32395MF_00218159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP32395MF_00218159, 1, (STRLEN(?targetMotifMatchCigarP32395MF_00218159) - STRLEN(REPLACE(?targetMotifMatchCigarP32395MF_00218159, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1169), '}'), '')))), '[^-]', ''))) AS ?step2170) .
BIND(((?step2170 + ?targetMotifMatchRegionMatchBeginPositionMF_00218160) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs1t171) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse61) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00218a59')) AS ?annotation59) .
BIND(?this AS ?pfs58) .
}
}
"xsd:string |
