| http://purl.uniprot.org/unirules/MF_00282#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:114454 up:source unirule:MF_00282 .
_:114455 up:source unirule:MF_00282 .
_:114456 up:source unirule:MF_00282 .
_:114457 up:source unirule:MF_00282 .
_:114458 up:source unirule:MF_00282 .
_:114459 up:source unirule:MF_00282 .
_:114460 up:source unirule:MF_00282 .
_:114461 up:source unirule:MF_00282 .
_:114462 up:source unirule:MF_00282 .
_:114463 up:source unirule:MF_00282 .
_:114464 up:source unirule:MF_00282 .
_:114465 up:source unirule:MF_00282 .
_:114466 up:source unirule:MF_00282 .
_:114467 up:source unirule:MF_00282 .
_:114468 up:source unirule:MF_00282 .
_:114469 up:source unirule:MF_00282 .
_:114470 up:source unirule:MF_00282 .
_:114471 up:source unirule:MF_00282 .
_:114472 up:source unirule:MF_00282 .
_:114473 up:source unirule:MF_00282 .
_:114474 up:source unirule:MF_00282 .
_:114475 up:source unirule:MF_00282 .
_:114476 up:source unirule:MF_00282 .
_:114477 up:source unirule:MF_00282 .
_:114478 up:source unirule:MF_00282 .
_:114479 up:source unirule:MF_00282 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0000287 ,
GO:0004826 ,
GO:0005524 ,
GO:0006432 ,
keyword:30 ,
keyword:436 ,
keyword:460 ,
keyword:479 ,
keyword:547 ,
keyword:648 ,
keyword:67 ;
up:recommendedName ?name0 .
?name0 up:ecName '6.1.1.20' ;
up:fullName 'Phenylalanine--tRNA ligase alpha subunit' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Phenylalanyl-tRNA synthetase alpha subunit' ;
up:shortName 'PheRS' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'pheS' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:18420 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 magnesium ions per tetramer.' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Tetramer of two alpha and two beta subunits.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 2 subfamily.' .
?case8 up:classifiedWith GO:0009507 .
?case9 up:classifiedWith GO:0005737 ,
keyword:963 .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:18420 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:58095 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:58095 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:58095 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:58095 .
_:114480 a rdf:Statement ;
up:attribution _:114454 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:114481 a rdf:Statement ;
up:attribution _:114455 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:114482 a rdf:Statement ;
up:attribution _:114456 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:114483 a rdf:Statement ;
up:attribution _:114457 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:114484 a rdf:Statement ;
up:attribution _:114458 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:114485 a rdf:Statement ;
up:attribution _:114459 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:114486 a rdf:Statement ;
up:attribution _:114460 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:114487 a rdf:Statement ;
up:attribution _:114461 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:30 .
_:114488 a rdf:Statement ;
up:attribution _:114462 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:67 .
_:114489 a rdf:Statement ;
up:attribution _:114463 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:436 .
_:114490 a rdf:Statement ;
up:attribution _:114464 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:114491 a rdf:Statement ;
up:attribution _:114465 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:114492 a rdf:Statement ;
up:attribution _:114466 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:114493 a rdf:Statement ;
up:attribution _:114467 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:648 .
_:114494 a rdf:Statement ;
up:attribution _:114468 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005524 .
_:114495 a rdf:Statement ;
up:attribution _:114469 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000287 .
_:114496 a rdf:Statement ;
up:attribution _:114470 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004826 .
_:114497 a rdf:Statement ;
up:attribution _:114471 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006432 .
_:114498 a rdf:Statement ;
up:attribution _:114472 ;
rdf:subject ?case8 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009507 .
_:114499 a rdf:Statement ;
up:attribution _:114473 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:114500 a rdf:Statement ;
up:attribution _:114474 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:114501 a rdf:Statement ;
up:source unirule:MF_00282 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:114502 a rdf:Statement ;
up:attribution _:114475 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:114503 a rdf:Statement ;
up:source unirule:MF_00282 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:114504 a rdf:Statement ;
up:attribution _:114476 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:114505 a rdf:Statement ;
up:source unirule:MF_00282 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:114506 a rdf:Statement ;
up:attribution _:114477 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:114507 a rdf:Statement ;
up:source unirule:MF_00282 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:114508 a rdf:Statement ;
up:attribution _:114478 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:114509 a rdf:Statement ;
up:source unirule:MF_00282 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:114510 a rdf:Statement ;
up:attribution _:114479 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00282
#Rule MF_00282 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
{
VALUES ?supertaxon45 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00282 .
?thisOrganism rdfs:subClassOf+ ?supertaxon45 .
} UNION {
?this rdfs:seeAlso signature:MF_00282 .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
} UNION {
?this up:encodedIn up:Cyanelle .
} UNION {
?this up:encodedIn up:Apicoplast .
} UNION {
?this up:encodedIn up:Organellar_chromatophore .
} UNION {
?this up:encodedIn up:Non-photosynthetic_plastid .
}
}
BIND(URI(CONCAT(STR(?this), '#MF_00282a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00282a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00282a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00282a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00282a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00282a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch50 faldo:location ?templateMotifSequenceMatchRegionQ76KA851 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76KA853 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76KA8MF_0028246 .
?templateMotifSequenceMatchRegionQ76KA851 faldo:begin ?templateMotifSequenceMatchBeginQ76KA852 .
?templateMotifSequenceMatchBeginQ76KA852 faldo:position ?templateMotifSequenceMatchBeginPositionQ76KA847 ;
faldo:reference isoform:Q76KA8-1 .
?templateMotifSequenceProfileAlignmentOperationQ76KA853 edam:has_input signature:MF_00282 ;
rdf:type edam:operation_0300 .
?targetMotifMatch54 faldo:location ?targetMotifMatchRegionMatch55 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0028257 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76KA8MF_0028248 .
?targetMotifMatchRegionMatch55 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0028256 .
?targetMotifMatchRegionMatchBeginMF_0028256 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0028249 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0028257 edam:has_input signature:MF_00282 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76KA8MF_0028246, 1, (STRLEN(?templateMotifCigarQ76KA8MF_0028246) - STRLEN(REPLACE(?templateMotifCigarQ76KA8MF_0028246, CONCAT('^(?:-*[^-]){', STR(((426 - ?templateMotifSequenceMatchBeginPositionQ76KA847) + 1)), '}'), '')))), '[a-z]', '')) AS ?step158) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76KA8MF_0028248, 1, (STRLEN(?targetMotifMatchCigarQ76KA8MF_0028248) - STRLEN(REPLACE(?targetMotifMatchCigarQ76KA8MF_0028248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76KA8MF_0028248, 1, (STRLEN(?targetMotifMatchCigarQ76KA8MF_0028248) - STRLEN(REPLACE(?targetMotifMatchCigarQ76KA8MF_0028248, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step158), '}'), '')))), '[^-]', ''))) AS ?step259) .
BIND(((?step259 + ?targetMotifMatchRegionMatchBeginPositionMF_0028249) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t60) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00282a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch65 faldo:location ?templateMotifSequenceMatchRegionQ76KA866 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76KA868 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76KA8MF_0028261 .
?templateMotifSequenceMatchRegionQ76KA866 faldo:begin ?templateMotifSequenceMatchBeginQ76KA867 .
?templateMotifSequenceMatchBeginQ76KA867 faldo:position ?templateMotifSequenceMatchBeginPositionQ76KA862 ;
faldo:reference isoform:Q76KA8-1 .
?templateMotifSequenceProfileAlignmentOperationQ76KA868 edam:has_input signature:MF_00282 ;
rdf:type edam:operation_0300 .
?targetMotifMatch69 faldo:location ?targetMotifMatchRegionMatch70 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0028272 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76KA8MF_0028263 .
?targetMotifMatchRegionMatch70 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0028271 .
?targetMotifMatchRegionMatchBeginMF_0028271 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0028264 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0028272 edam:has_input signature:MF_00282 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76KA8MF_0028261, 1, (STRLEN(?templateMotifCigarQ76KA8MF_0028261) - STRLEN(REPLACE(?templateMotifCigarQ76KA8MF_0028261, CONCAT('^(?:-*[^-]){', STR(((344 - ?templateMotifSequenceMatchBeginPositionQ76KA862) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76KA8MF_0028263, 1, (STRLEN(?targetMotifMatchCigarQ76KA8MF_0028263) - STRLEN(REPLACE(?targetMotifMatchCigarQ76KA8MF_0028263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76KA8MF_0028263, 1, (STRLEN(?targetMotifMatchCigarQ76KA8MF_0028263) - STRLEN(REPLACE(?targetMotifMatchCigarQ76KA8MF_0028263, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0028264) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00282a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionQ76KA881 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76KA883 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76KA8MF_0028276 .
?templateMotifSequenceMatchRegionQ76KA881 faldo:begin ?templateMotifSequenceMatchBeginQ76KA882 .
?templateMotifSequenceMatchBeginQ76KA882 faldo:position ?templateMotifSequenceMatchBeginPositionQ76KA877 ;
faldo:reference isoform:Q76KA8-1 .
?templateMotifSequenceProfileAlignmentOperationQ76KA883 edam:has_input signature:MF_00282 ;
rdf:type edam:operation_0300 .
?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0028287 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76KA8MF_0028278 .
?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0028286 .
?targetMotifMatchRegionMatchBeginMF_0028286 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0028279 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0028287 edam:has_input signature:MF_00282 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76KA8MF_0028276, 1, (STRLEN(?templateMotifCigarQ76KA8MF_0028276) - STRLEN(REPLACE(?templateMotifCigarQ76KA8MF_0028276, CONCAT('^(?:-*[^-]){', STR(((383 - ?templateMotifSequenceMatchBeginPositionQ76KA877) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76KA8MF_0028278, 1, (STRLEN(?targetMotifMatchCigarQ76KA8MF_0028278) - STRLEN(REPLACE(?targetMotifMatchCigarQ76KA8MF_0028278, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76KA8MF_0028278, 1, (STRLEN(?targetMotifMatchCigarQ76KA8MF_0028278) - STRLEN(REPLACE(?targetMotifMatchCigarQ76KA8MF_0028278, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0028279) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76KA8MF_0028276, 1, (STRLEN(?templateMotifCigarQ76KA8MF_0028276) - STRLEN(REPLACE(?templateMotifCigarQ76KA8MF_0028276, CONCAT('^(?:-*[^-]){', STR(((385 - ?templateMotifSequenceMatchBeginPositionQ76KA877) + 1)), '}'), '')))), '[a-z]', '')) AS ?step190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76KA8MF_0028278, 1, (STRLEN(?targetMotifMatchCigarQ76KA8MF_0028278) - STRLEN(REPLACE(?targetMotifMatchCigarQ76KA8MF_0028278, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76KA8MF_0028278, 1, (STRLEN(?targetMotifMatchCigarQ76KA8MF_0028278) - STRLEN(REPLACE(?targetMotifMatchCigarQ76KA8MF_0028278, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step190), '}'), '')))), '[^-]', ''))) AS ?step291) .
BIND(((?step291 + ?targetMotifMatchRegionMatchBeginPositionMF_0028279) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t92) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER (REGEX('Q[IVL][DE]', SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00282a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch97 faldo:location ?templateMotifSequenceMatchRegionQ76KA898 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76KA8100 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76KA8MF_0028293 .
?templateMotifSequenceMatchRegionQ76KA898 faldo:begin ?templateMotifSequenceMatchBeginQ76KA899 .
?templateMotifSequenceMatchBeginQ76KA899 faldo:position ?templateMotifSequenceMatchBeginPositionQ76KA894 ;
faldo:reference isoform:Q76KA8-1 .
?templateMotifSequenceProfileAlignmentOperationQ76KA8100 edam:has_input signature:MF_00282 ;
rdf:type edam:operation_0300 .
?targetMotifMatch101 faldo:location ?targetMotifMatchRegionMatch102 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00282104 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76KA8MF_0028295 .
?targetMotifMatchRegionMatch102 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00282103 .
?targetMotifMatchRegionMatchBeginMF_00282103 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0028296 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00282104 edam:has_input signature:MF_00282 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76KA8MF_0028293, 1, (STRLEN(?templateMotifCigarQ76KA8MF_0028293) - STRLEN(REPLACE(?templateMotifCigarQ76KA8MF_0028293, CONCAT('^(?:-*[^-]){', STR(((424 - ?templateMotifSequenceMatchBeginPositionQ76KA894) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76KA8MF_0028295, 1, (STRLEN(?targetMotifMatchCigarQ76KA8MF_0028295) - STRLEN(REPLACE(?targetMotifMatchCigarQ76KA8MF_0028295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76KA8MF_0028295, 1, (STRLEN(?targetMotifMatchCigarQ76KA8MF_0028295) - STRLEN(REPLACE(?targetMotifMatchCigarQ76KA8MF_0028295, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0028296) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER (REGEX('[FY]', SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00282a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch112 faldo:location ?templateMotifSequenceMatchRegionQ76KA8113 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ76KA8115 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ76KA8MF_00282108 .
?templateMotifSequenceMatchRegionQ76KA8113 faldo:begin ?templateMotifSequenceMatchBeginQ76KA8114 .
?templateMotifSequenceMatchBeginQ76KA8114 faldo:position ?templateMotifSequenceMatchBeginPositionQ76KA8109 ;
faldo:reference isoform:Q76KA8-1 .
?templateMotifSequenceProfileAlignmentOperationQ76KA8115 edam:has_input signature:MF_00282 ;
rdf:type edam:operation_0300 .
?targetMotifMatch116 faldo:location ?targetMotifMatchRegionMatch117 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00282119 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ76KA8MF_00282110 .
?targetMotifMatchRegionMatch117 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00282118 .
?targetMotifMatchRegionMatchBeginMF_00282118 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00282111 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00282119 edam:has_input signature:MF_00282 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ76KA8MF_00282108, 1, (STRLEN(?templateMotifCigarQ76KA8MF_00282108) - STRLEN(REPLACE(?templateMotifCigarQ76KA8MF_00282108, CONCAT('^(?:-*[^-]){', STR(((449 - ?templateMotifSequenceMatchBeginPositionQ76KA8109) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1120) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ76KA8MF_00282110, 1, (STRLEN(?targetMotifMatchCigarQ76KA8MF_00282110) - STRLEN(REPLACE(?targetMotifMatchCigarQ76KA8MF_00282110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ76KA8MF_00282110, 1, (STRLEN(?targetMotifMatchCigarQ76KA8MF_00282110) - STRLEN(REPLACE(?targetMotifMatchCigarQ76KA8MF_00282110, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1120), '}'), '')))), '[^-]', ''))) AS ?step2121) .
BIND(((?step2121 + ?targetMotifMatchRegionMatchBeginPositionMF_00282111) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t122) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1) = 'F')) .
BIND(URI(CONCAT(STR(?this), '#MF_00282a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
BIND(?this AS ?case8) .
}
OPTIONAL {
?this a up:Protein .
FILTER (! (EXISTS {
{
?this up:encodedIn up:Plastid .
} UNION {
?this up:encodedIn up:Chloroplast .
}
})) .
BIND(?this AS ?case9) .
}
}
"xsd:string |
