| http://purl.uniprot.org/unirules/MF_00300#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:122484 up:source unirule:MF_00300 .
_:122485 up:source unirule:MF_00300 .
_:122486 up:source unirule:MF_00300 .
_:122487 up:source unirule:MF_00300 .
_:122488 up:source unirule:MF_00300 .
_:122489 up:source unirule:MF_00300 .
_:122490 up:source unirule:MF_00300 .
_:122491 up:source unirule:MF_00300 .
_:122492 up:source unirule:MF_00300 .
_:122493 up:source unirule:MF_00300 .
_:122494 up:source unirule:MF_00300 .
_:122495 up:source unirule:MF_00300 .
_:122496 up:source unirule:MF_00300 .
_:122497 up:source unirule:MF_00300 .
_:122498 up:source unirule:MF_00300 .
_:122499 up:source unirule:MF_00300 .
_:122500 up:source unirule:MF_00300 .
_:122501 up:source unirule:MF_00300 .
_:122502 up:source unirule:MF_00300 .
_:122503 up:source unirule:MF_00300 .
_:122504 up:source unirule:MF_00300 .
_:122505 up:source unirule:MF_00300 .
_:122506 up:source unirule:MF_00300 .
_:122507 up:source unirule:MF_00300 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0004107 ,
GO:0009423 ,
keyword:274 ,
keyword:285 ,
keyword:288 ,
keyword:28 ,
keyword:456 ,
keyword:521 ,
keyword:57 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.2.3.5' ;
up:fullName 'Chorismate synthase' ;
up:shortName 'CS' ;
rdf:type up:Structured_Name .
?name1 up:fullName '5-enolpyruvylshikimate-3-phosphate phospholyase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'aroC' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:57618 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Reduced FMN (FMNH(2)).' .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 7/7.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the chorismate synthase family.' .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:58210 .
?pfs17 up:annotation ?annotation18 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:58210 .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:58210 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:58349 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
up:ligand ?ligand42 ;
rdf:type up:Binding_Site_Annotation .
?pfsb40 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?ligand42 rdfs:subClassOf chebi:58349 .
?pfs45 up:annotation ?annotation46 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:58210 .
?pfs52 up:annotation ?annotation53 .
?annotation53 faldo:begin ?pfsb54 ;
faldo:end ?pfse55 ;
up:ligand ?ligand56 ;
rdf:type up:Binding_Site_Annotation .
?pfsb54 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?ligand56 rdfs:subClassOf chebi:58210 .
_:122508 a rdf:Statement ;
up:attribution _:122484 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:122509 a rdf:Statement ;
up:attribution _:122485 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:122510 a rdf:Statement ;
up:attribution _:122486 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:122511 a rdf:Statement ;
up:attribution _:122487 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:122512 a rdf:Statement ;
up:attribution _:122488 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:122513 a rdf:Statement ;
up:attribution _:122489 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:122514 a rdf:Statement ;
up:attribution _:122490 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:122515 a rdf:Statement ;
up:attribution _:122491 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:122516 a rdf:Statement ;
up:attribution _:122492 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:122517 a rdf:Statement ;
up:attribution _:122493 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:57 .
_:122518 a rdf:Statement ;
up:attribution _:122494 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:274 .
_:122519 a rdf:Statement ;
up:attribution _:122495 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:285 .
_:122520 a rdf:Statement ;
up:attribution _:122496 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:288 .
_:122521 a rdf:Statement ;
up:attribution _:122497 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:122522 a rdf:Statement ;
up:attribution _:122498 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:122523 a rdf:Statement ;
up:attribution _:122499 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004107 .
_:122524 a rdf:Statement ;
up:attribution _:122500 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009423 .
_:122525 a rdf:Statement ;
up:source unirule:MF_00300 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:122526 a rdf:Statement ;
up:attribution _:122501 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:122527 a rdf:Statement ;
up:source unirule:MF_00300 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:122528 a rdf:Statement ;
up:attribution _:122502 ;
rdf:subject ?pfs17 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:122529 a rdf:Statement ;
up:source unirule:MF_00300 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:122530 a rdf:Statement ;
up:attribution _:122503 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:122531 a rdf:Statement ;
up:source unirule:MF_00300 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:122532 a rdf:Statement ;
up:attribution _:122504 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:122533 a rdf:Statement ;
up:source unirule:MF_00300 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:122534 a rdf:Statement ;
up:attribution _:122505 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:122535 a rdf:Statement ;
up:source unirule:MF_00300 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:122536 a rdf:Statement ;
up:attribution _:122506 ;
rdf:subject ?pfs45 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:122537 a rdf:Statement ;
up:source unirule:MF_00300 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
_:122538 a rdf:Statement ;
up:attribution _:122507 ;
rdf:subject ?pfs52 ;
rdf:predicate up:annotation ;
rdf:object ?annotation53 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00300
#Rule MF_00300 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-03-12
VALUES ?supertaxon59 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00300 .
?thisOrganism rdfs:subClassOf+ ?supertaxon59 .
BIND(URI(CONCAT(STR(?this), '#MF_00300a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00300a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00300a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00300a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00300a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00300a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00300a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch64 faldo:location ?templateMotifSequenceMatchRegionP0A2Y665 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A2Y667 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A2Y6MF_0030060 .
?templateMotifSequenceMatchRegionP0A2Y665 faldo:begin ?templateMotifSequenceMatchBeginP0A2Y666 .
?templateMotifSequenceMatchBeginP0A2Y666 faldo:position ?templateMotifSequenceMatchBeginPositionP0A2Y661 ;
faldo:reference isoform:P0A2Y6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A2Y667 edam:has_input signature:MF_00300 ;
rdf:type edam:operation_0300 .
?targetMotifMatch68 faldo:location ?targetMotifMatchRegionMatch69 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0030071 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A2Y6MF_0030062 .
?targetMotifMatchRegionMatch69 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0030070 .
?targetMotifMatchRegionMatchBeginMF_0030070 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0030063 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0030071 edam:has_input signature:MF_00300 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A2Y6MF_0030060, 1, (STRLEN(?templateMotifCigarP0A2Y6MF_0030060) - STRLEN(REPLACE(?templateMotifCigarP0A2Y6MF_0030060, CONCAT('^(?:-*[^-]){', STR(((130 - ?templateMotifSequenceMatchBeginPositionP0A2Y661) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_0030062, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_0030062) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_0030062, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_0030062, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_0030062) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_0030062, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0030063) - 1) AS ?thisPositionOn15) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A2Y6MF_0030060, 1, (STRLEN(?templateMotifCigarP0A2Y6MF_0030060) - STRLEN(REPLACE(?templateMotifCigarP0A2Y6MF_0030060, CONCAT('^(?:-*[^-]){', STR(((132 - ?templateMotifSequenceMatchBeginPositionP0A2Y661) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_0030062, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_0030062) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_0030062, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_0030062, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_0030062) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_0030062, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0030063) - 1) AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER (REGEX('[RH][ARNDCQEGHILKMFPSTWYVBZJUOX]S', SUBSTR(?thisSequenceValue, ?thisPositionOn15, (?thisPositionOn16 - ?thisPositionOn15)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00300a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionP0A2Y682 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A2Y684 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A2Y6MF_0030077 .
?templateMotifSequenceMatchRegionP0A2Y682 faldo:begin ?templateMotifSequenceMatchBeginP0A2Y683 .
?templateMotifSequenceMatchBeginP0A2Y683 faldo:position ?templateMotifSequenceMatchBeginPositionP0A2Y678 ;
faldo:reference isoform:P0A2Y6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A2Y684 edam:has_input signature:MF_00300 ;
rdf:type edam:operation_0300 .
?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0030088 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A2Y6MF_0030079 .
?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0030087 .
?targetMotifMatchRegionMatchBeginMF_0030087 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0030080 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0030088 edam:has_input signature:MF_00300 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A2Y6MF_0030077, 1, (STRLEN(?templateMotifCigarP0A2Y6MF_0030077) - STRLEN(REPLACE(?templateMotifCigarP0A2Y6MF_0030077, CONCAT('^(?:-*[^-]){', STR(((251 - ?templateMotifSequenceMatchBeginPositionP0A2Y678) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_0030079, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_0030079) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_0030079, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_0030079, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_0030079) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_0030079, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0030080) - 1) AS ?thisPositionOn22) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A2Y6MF_0030077, 1, (STRLEN(?templateMotifCigarP0A2Y6MF_0030077) - STRLEN(REPLACE(?templateMotifCigarP0A2Y6MF_0030077, CONCAT('^(?:-*[^-]){', STR(((252 - ?templateMotifSequenceMatchBeginPositionP0A2Y678) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_0030079, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_0030079) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_0030079, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_0030079, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_0030079) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_0030079, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0030080) - 1) AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER (REGEX('[NQ][AGTS]', SUBSTR(?thisSequenceValue, ?thisPositionOn22, (?thisPositionOn23 - ?thisPositionOn22)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00300a18')) AS ?annotation18) .
BIND(?this AS ?pfs17) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP0A2Y699 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A2Y6101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A2Y6MF_0030094 .
?templateMotifSequenceMatchRegionP0A2Y699 faldo:begin ?templateMotifSequenceMatchBeginP0A2Y6100 .
?templateMotifSequenceMatchBeginP0A2Y6100 faldo:position ?templateMotifSequenceMatchBeginPositionP0A2Y695 ;
faldo:reference isoform:P0A2Y6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A2Y6101 edam:has_input signature:MF_00300 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00300105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A2Y6MF_0030096 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00300104 .
?targetMotifMatchRegionMatchBeginMF_00300104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0030097 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00300105 edam:has_input signature:MF_00300 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A2Y6MF_0030094, 1, (STRLEN(?templateMotifCigarP0A2Y6MF_0030094) - STRLEN(REPLACE(?templateMotifCigarP0A2Y6MF_0030094, CONCAT('^(?:-*[^-]){', STR(((311 - ?templateMotifSequenceMatchBeginPositionP0A2Y695) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_0030096, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_0030096) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_0030096, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_0030096, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_0030096) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_0030096, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0030097) - 1) AS ?thisPositionOn29) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A2Y6MF_0030094, 1, (STRLEN(?templateMotifCigarP0A2Y6MF_0030094) - STRLEN(REPLACE(?templateMotifCigarP0A2Y6MF_0030094, CONCAT('^(?:-*[^-]){', STR(((315 - ?templateMotifSequenceMatchBeginPositionP0A2Y695) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_0030096, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_0030096) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_0030096, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_0030096, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_0030096) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_0030096, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) .
BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0030097) - 1) AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER (REGEX('[KH][ARNDCQEGHILKMFPSTWYVBZJUOX]{3)[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn29, (?thisPositionOn30 - ?thisPositionOn29)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00300a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionP0A2Y6116 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A2Y6118 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A2Y6MF_00300111 .
?templateMotifSequenceMatchRegionP0A2Y6116 faldo:begin ?templateMotifSequenceMatchBeginP0A2Y6117 .
?templateMotifSequenceMatchBeginP0A2Y6117 faldo:position ?templateMotifSequenceMatchBeginPositionP0A2Y6112 ;
faldo:reference isoform:P0A2Y6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A2Y6118 edam:has_input signature:MF_00300 ;
rdf:type edam:operation_0300 .
?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00300122 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A2Y6MF_00300113 .
?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00300121 .
?targetMotifMatchRegionMatchBeginMF_00300121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00300114 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00300122 edam:has_input signature:MF_00300 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A2Y6MF_00300111, 1, (STRLEN(?templateMotifCigarP0A2Y6MF_00300111) - STRLEN(REPLACE(?templateMotifCigarP0A2Y6MF_00300111, CONCAT('^(?:-*[^-]){', STR(((39 - ?templateMotifSequenceMatchBeginPositionP0A2Y6112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_00300113, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_00300113) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_00300113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_00300113, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_00300113) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_00300113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_00300114) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00300a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionP0A2Y6131 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A2Y6133 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A2Y6MF_00300126 .
?templateMotifSequenceMatchRegionP0A2Y6131 faldo:begin ?templateMotifSequenceMatchBeginP0A2Y6132 .
?templateMotifSequenceMatchBeginP0A2Y6132 faldo:position ?templateMotifSequenceMatchBeginPositionP0A2Y6127 ;
faldo:reference isoform:P0A2Y6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A2Y6133 edam:has_input signature:MF_00300 ;
rdf:type edam:operation_0300 .
?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00300137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A2Y6MF_00300128 .
?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00300136 .
?targetMotifMatchRegionMatchBeginMF_00300136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00300129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00300137 edam:has_input signature:MF_00300 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A2Y6MF_00300126, 1, (STRLEN(?templateMotifCigarP0A2Y6MF_00300126) - STRLEN(REPLACE(?templateMotifCigarP0A2Y6MF_00300126, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP0A2Y6127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_00300128, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_00300128) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_00300128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_00300128, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_00300128) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_00300128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_00300129) - 1) AS ?thisPositionOn43) .
BIND(?thisPositionOn43 AS ?thisPositionOn44) .
BIND(?this AS ?pfs1t140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfse41) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn43, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00300a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionP0A2Y6146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A2Y6148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A2Y6MF_00300141 .
?templateMotifSequenceMatchRegionP0A2Y6146 faldo:begin ?templateMotifSequenceMatchBeginP0A2Y6147 .
?templateMotifSequenceMatchBeginP0A2Y6147 faldo:position ?templateMotifSequenceMatchBeginPositionP0A2Y6142 ;
faldo:reference isoform:P0A2Y6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A2Y6148 edam:has_input signature:MF_00300 ;
rdf:type edam:operation_0300 .
?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00300152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A2Y6MF_00300143 .
?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00300151 .
?targetMotifMatchRegionMatchBeginMF_00300151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00300144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00300152 edam:has_input signature:MF_00300 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A2Y6MF_00300141, 1, (STRLEN(?templateMotifCigarP0A2Y6MF_00300141) - STRLEN(REPLACE(?templateMotifCigarP0A2Y6MF_00300141, CONCAT('^(?:-*[^-]){', STR(((296 - ?templateMotifSequenceMatchBeginPositionP0A2Y6142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_00300143, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_00300143) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_00300143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_00300143, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_00300143) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_00300143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_00300144) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs1t155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER (REGEX('[GAS]', SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00300a46')) AS ?annotation46) .
BIND(?this AS ?pfs45) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionP0A2Y6161 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A2Y6163 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A2Y6MF_00300156 .
?templateMotifSequenceMatchRegionP0A2Y6161 faldo:begin ?templateMotifSequenceMatchBeginP0A2Y6162 .
?templateMotifSequenceMatchBeginP0A2Y6162 faldo:position ?templateMotifSequenceMatchBeginPositionP0A2Y6157 ;
faldo:reference isoform:P0A2Y6-1 .
?templateMotifSequenceProfileAlignmentOperationP0A2Y6163 edam:has_input signature:MF_00300 ;
rdf:type edam:operation_0300 .
?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00300167 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A2Y6MF_00300158 .
?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00300166 .
?targetMotifMatchRegionMatchBeginMF_00300166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00300159 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00300167 edam:has_input signature:MF_00300 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A2Y6MF_00300156, 1, (STRLEN(?templateMotifCigarP0A2Y6MF_00300156) - STRLEN(REPLACE(?templateMotifCigarP0A2Y6MF_00300156, CONCAT('^(?:-*[^-]){', STR(((337 - ?templateMotifSequenceMatchBeginPositionP0A2Y6157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_00300158, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_00300158) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_00300158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A2Y6MF_00300158, 1, (STRLEN(?targetMotifMatchCigarP0A2Y6MF_00300158) - STRLEN(REPLACE(?targetMotifMatchCigarP0A2Y6MF_00300158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_00300159) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb54) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse55) .
FILTER (REGEX('[RN]', SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00300a53')) AS ?annotation53) .
BIND(?this AS ?pfs52) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case9) .
}
}
"xsd:string |
