| http://purl.uniprot.org/unirules/MF_00313#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:126475 up:source unirule:MF_00313 .
_:126476 up:source unirule:MF_00313 .
_:126477 up:source unirule:MF_00313 .
_:126478 up:source unirule:MF_00313 .
_:126479 up:source unirule:MF_00313 .
_:126480 up:source unirule:MF_00313 .
_:126481 up:source unirule:MF_00313 .
_:126482 up:source unirule:MF_00313 .
_:126483 up:source unirule:MF_00313 .
_:126484 up:source unirule:MF_00313 .
_:126485 up:source unirule:MF_00313 .
_:126486 up:source unirule:MF_00313 .
_:126487 up:source unirule:MF_00313 .
_:126488 up:source unirule:MF_00313 .
_:126489 up:source unirule:MF_00313 .
_:126490 up:source unirule:MF_00313 .
?this up:annotation ?annotation2 ,
?annotation4 ,
?annotation5 ;
up:classifiedWith GO:0004359 ,
keyword:378 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.1.2' ;
up:fullName 'Glutaminase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'glsA' .
?annotation2 up:activity ?activity3 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity3 up:catalyticActivity ;
up:enzymeClass .
?annotation4 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation5 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the glutaminase family.' .
?case6 up:classifiedWith keyword:7 .
?pfs7 up:annotation ?annotation8 .
?annotation8 faldo:begin ?pfsb9 ;
faldo:end ?pfse10 ;
up:ligand ?ligand11 ;
rdf:type up:Binding_Site_Annotation .
?pfsb9 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse10 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand11 rdfs:subClassOf ?molecule12 .
?molecule12 rdfs:label 'substrate' .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf ?molecule20 .
?molecule20 rdfs:label 'substrate' .
?pfs23 up:annotation ?annotation24 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf ?molecule28 .
?molecule28 rdfs:label 'substrate' .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf ?molecule36 .
?molecule36 rdfs:label 'substrate' .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf ?molecule44 .
?molecule44 rdfs:label 'substrate' .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn54 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf ?molecule52 .
?molecule52 rdfs:label 'substrate' .
?pfs55 up:annotation ?annotation56 .
?annotation56 faldo:begin ?pfsb57 ;
faldo:end ?pfse58 ;
up:ligand ?ligand59 ;
rdf:type up:Binding_Site_Annotation .
?pfsb57 faldo:position ?thisPositionOn61 ;
rdf:type faldo:ExactPosition .
?pfse58 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?ligand59 rdfs:subClassOf ?molecule60 .
?molecule60 rdfs:label 'substrate' .
?pfs63 up:annotation ?annotation64 .
?annotation64 faldo:begin ?pfsb65 ;
faldo:end ?pfse66 ;
rdf:type up:Modified_Residue_Annotation ;
rdfs:comment 'N6-acetyllysine' .
?pfsb65 faldo:position ?thisPositionOn67 ;
rdf:type faldo:ExactPosition .
?pfse66 faldo:position ?thisPositionOn68 ;
rdf:type faldo:ExactPosition .
_:126491 a rdf:Statement ;
up:attribution _:126475 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:126492 a rdf:Statement ;
up:attribution _:126476 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:126493 a rdf:Statement ;
up:attribution _:126477 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:126494 a rdf:Statement ;
up:attribution _:126478 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:126495 a rdf:Statement ;
up:attribution _:126479 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:126496 a rdf:Statement ;
up:attribution _:126480 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:126497 a rdf:Statement ;
up:attribution _:126481 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004359 .
_:126498 a rdf:Statement ;
up:attribution _:126482 ;
rdf:subject ?case6 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:7 .
_:126499 a rdf:Statement ;
up:source unirule:MF_00313 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:126500 a rdf:Statement ;
up:attribution _:126483 ;
rdf:subject ?pfs7 ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:126501 a rdf:Statement ;
up:source unirule:MF_00313 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:126502 a rdf:Statement ;
up:attribution _:126484 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:126503 a rdf:Statement ;
up:source unirule:MF_00313 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:126504 a rdf:Statement ;
up:attribution _:126485 ;
rdf:subject ?pfs23 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:126505 a rdf:Statement ;
up:source unirule:MF_00313 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:126506 a rdf:Statement ;
up:attribution _:126486 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:126507 a rdf:Statement ;
up:source unirule:MF_00313 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:126508 a rdf:Statement ;
up:attribution _:126487 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:126509 a rdf:Statement ;
up:source unirule:MF_00313 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:126510 a rdf:Statement ;
up:attribution _:126488 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:126511 a rdf:Statement ;
up:source unirule:MF_00313 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:126512 a rdf:Statement ;
up:attribution _:126489 ;
rdf:subject ?pfs55 ;
rdf:predicate up:annotation ;
rdf:object ?annotation56 .
_:126513 a rdf:Statement ;
up:source unirule:MF_00313 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
_:126514 a rdf:Statement ;
up:attribution _:126490 ;
rdf:subject ?pfs63 ;
rdf:predicate up:annotation ;
rdf:object ?annotation64 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00313
#Rule MF_00313 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00313 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00313a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00313a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00313a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00313a5')) AS ?annotation5) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch73 faldo:location ?templateMotifSequenceMatchRegionO3146574 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3146576 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO31465MF_0031369 .
?templateMotifSequenceMatchRegionO3146574 faldo:begin ?templateMotifSequenceMatchBeginO3146575 .
?templateMotifSequenceMatchBeginO3146575 faldo:position ?templateMotifSequenceMatchBeginPositionO3146570 ;
faldo:reference isoform:O31465-1 .
?templateMotifSequenceProfileAlignmentOperationO3146576 edam:has_input signature:MF_00313 ;
rdf:type edam:operation_0300 .
?targetMotifMatch77 faldo:location ?targetMotifMatchRegionMatch78 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0031380 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO31465MF_0031371 .
?targetMotifMatchRegionMatch78 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0031379 .
?targetMotifMatchRegionMatchBeginMF_0031379 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0031372 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0031380 edam:has_input signature:MF_00313 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFT_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31465MF_0031369, 1, (STRLEN(?templateMotifCigarO31465MF_0031369) - STRLEN(REPLACE(?templateMotifCigarO31465MF_0031369, CONCAT('^(?:-*[^-]){', STR(((74 - ?templateMotifSequenceMatchBeginPositionO3146570) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31465MF_0031371, 1, (STRLEN(?targetMotifMatchCigarO31465MF_0031371) - STRLEN(REPLACE(?targetMotifMatchCigarO31465MF_0031371, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31465MF_0031371, 1, (STRLEN(?targetMotifMatchCigarO31465MF_0031371) - STRLEN(REPLACE(?targetMotifMatchCigarO31465MF_0031371, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) .
BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0031372) - 1) AS ?thisPositionOn13) .
BIND(?thisPositionOn13 AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb9) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse10) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn13, 1) = 'S')) .
BIND(URI(CONCAT(STR(?this), '#MF_00313a8')) AS ?annotation8) .
BIND(?this AS ?pfs7) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionO3146589 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO3146591 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO31465MF_0031384 .
?templateMotifSequenceMatchRegionO3146589 faldo:begin ?templateMotifSequenceMatchBeginO3146590 .
?templateMotifSequenceMatchBeginO3146590 faldo:position ?templateMotifSequenceMatchBeginPositionO3146585 ;
faldo:reference isoform:O31465-1 .
?templateMotifSequenceProfileAlignmentOperationO3146591 edam:has_input signature:MF_00313 ;
rdf:type edam:operation_0300 .
?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0031395 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO31465MF_0031386 .
?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0031394 .
?targetMotifMatchRegionMatchBeginMF_0031394 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0031387 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0031395 edam:has_input signature:MF_00313 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31465MF_0031384, 1, (STRLEN(?templateMotifCigarO31465MF_0031384) - STRLEN(REPLACE(?templateMotifCigarO31465MF_0031384, CONCAT('^(?:-*[^-]){', STR(((126 - ?templateMotifSequenceMatchBeginPositionO3146585) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31465MF_0031386, 1, (STRLEN(?targetMotifMatchCigarO31465MF_0031386) - STRLEN(REPLACE(?targetMotifMatchCigarO31465MF_0031386, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31465MF_0031386, 1, (STRLEN(?targetMotifMatchCigarO31465MF_0031386) - STRLEN(REPLACE(?targetMotifMatchCigarO31465MF_0031386, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) .
BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0031387) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs2t98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00313a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch103 faldo:location ?templateMotifSequenceMatchRegionO31465104 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO31465106 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO31465MF_0031399 .
?templateMotifSequenceMatchRegionO31465104 faldo:begin ?templateMotifSequenceMatchBeginO31465105 .
?templateMotifSequenceMatchBeginO31465105 faldo:position ?templateMotifSequenceMatchBeginPositionO31465100 ;
faldo:reference isoform:O31465-1 .
?templateMotifSequenceProfileAlignmentOperationO31465106 edam:has_input signature:MF_00313 ;
rdf:type edam:operation_0300 .
?targetMotifMatch107 faldo:location ?targetMotifMatchRegionMatch108 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00313110 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO31465MF_00313101 .
?targetMotifMatchRegionMatch108 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00313109 .
?targetMotifMatchRegionMatchBeginMF_00313109 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00313102 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00313110 edam:has_input signature:MF_00313 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31465MF_0031399, 1, (STRLEN(?templateMotifCigarO31465MF_0031399) - STRLEN(REPLACE(?templateMotifCigarO31465MF_0031399, CONCAT('^(?:-*[^-]){', STR(((170 - ?templateMotifSequenceMatchBeginPositionO31465100) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1111) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31465MF_00313101, 1, (STRLEN(?targetMotifMatchCigarO31465MF_00313101) - STRLEN(REPLACE(?targetMotifMatchCigarO31465MF_00313101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31465MF_00313101, 1, (STRLEN(?targetMotifMatchCigarO31465MF_00313101) - STRLEN(REPLACE(?targetMotifMatchCigarO31465MF_00313101, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1111), '}'), '')))), '[^-]', ''))) AS ?step2112) .
BIND(((?step2112 + ?targetMotifMatchRegionMatchBeginPositionMF_00313102) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs2t113) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00313a24')) AS ?annotation24) .
BIND(?this AS ?pfs23) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch118 faldo:location ?templateMotifSequenceMatchRegionO31465119 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO31465121 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO31465MF_00313114 .
?templateMotifSequenceMatchRegionO31465119 faldo:begin ?templateMotifSequenceMatchBeginO31465120 .
?templateMotifSequenceMatchBeginO31465120 faldo:position ?templateMotifSequenceMatchBeginPositionO31465115 ;
faldo:reference isoform:O31465-1 .
?templateMotifSequenceProfileAlignmentOperationO31465121 edam:has_input signature:MF_00313 ;
rdf:type edam:operation_0300 .
?targetMotifMatch122 faldo:location ?targetMotifMatchRegionMatch123 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00313125 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO31465MF_00313116 .
?targetMotifMatchRegionMatch123 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00313124 .
?targetMotifMatchRegionMatchBeginMF_00313124 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00313117 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00313125 edam:has_input signature:MF_00313 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31465MF_00313114, 1, (STRLEN(?templateMotifCigarO31465MF_00313114) - STRLEN(REPLACE(?templateMotifCigarO31465MF_00313114, CONCAT('^(?:-*[^-]){', STR(((177 - ?templateMotifSequenceMatchBeginPositionO31465115) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1126) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31465MF_00313116, 1, (STRLEN(?targetMotifMatchCigarO31465MF_00313116) - STRLEN(REPLACE(?targetMotifMatchCigarO31465MF_00313116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31465MF_00313116, 1, (STRLEN(?targetMotifMatchCigarO31465MF_00313116) - STRLEN(REPLACE(?targetMotifMatchCigarO31465MF_00313116, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1126), '}'), '')))), '[^-]', ''))) AS ?step2127) .
BIND(((?step2127 + ?targetMotifMatchRegionMatchBeginPositionMF_00313117) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs2t128) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse34) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00313a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch133 faldo:location ?templateMotifSequenceMatchRegionO31465134 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO31465136 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO31465MF_00313129 .
?templateMotifSequenceMatchRegionO31465134 faldo:begin ?templateMotifSequenceMatchBeginO31465135 .
?templateMotifSequenceMatchBeginO31465135 faldo:position ?templateMotifSequenceMatchBeginPositionO31465130 ;
faldo:reference isoform:O31465-1 .
?templateMotifSequenceProfileAlignmentOperationO31465136 edam:has_input signature:MF_00313 ;
rdf:type edam:operation_0300 .
?targetMotifMatch137 faldo:location ?targetMotifMatchRegionMatch138 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00313140 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO31465MF_00313131 .
?targetMotifMatchRegionMatch138 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00313139 .
?targetMotifMatchRegionMatchBeginMF_00313139 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00313132 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00313140 edam:has_input signature:MF_00313 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31465MF_00313129, 1, (STRLEN(?templateMotifCigarO31465MF_00313129) - STRLEN(REPLACE(?templateMotifCigarO31465MF_00313129, CONCAT('^(?:-*[^-]){', STR(((201 - ?templateMotifSequenceMatchBeginPositionO31465130) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1141) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31465MF_00313131, 1, (STRLEN(?targetMotifMatchCigarO31465MF_00313131) - STRLEN(REPLACE(?targetMotifMatchCigarO31465MF_00313131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31465MF_00313131, 1, (STRLEN(?targetMotifMatchCigarO31465MF_00313131) - STRLEN(REPLACE(?targetMotifMatchCigarO31465MF_00313131, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1141), '}'), '')))), '[^-]', ''))) AS ?step2142) .
BIND(((?step2142 + ?targetMotifMatchRegionMatchBeginPositionMF_00313132) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs2t143) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00313a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch148 faldo:location ?templateMotifSequenceMatchRegionO31465149 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO31465151 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO31465MF_00313144 .
?templateMotifSequenceMatchRegionO31465149 faldo:begin ?templateMotifSequenceMatchBeginO31465150 .
?templateMotifSequenceMatchBeginO31465150 faldo:position ?templateMotifSequenceMatchBeginPositionO31465145 ;
faldo:reference isoform:O31465-1 .
?templateMotifSequenceProfileAlignmentOperationO31465151 edam:has_input signature:MF_00313 ;
rdf:type edam:operation_0300 .
?targetMotifMatch152 faldo:location ?targetMotifMatchRegionMatch153 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00313155 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO31465MF_00313146 .
?targetMotifMatchRegionMatch153 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00313154 .
?targetMotifMatchRegionMatchBeginMF_00313154 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00313147 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00313155 edam:has_input signature:MF_00313 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31465MF_00313144, 1, (STRLEN(?templateMotifCigarO31465MF_00313144) - STRLEN(REPLACE(?templateMotifCigarO31465MF_00313144, CONCAT('^(?:-*[^-]){', STR(((253 - ?templateMotifSequenceMatchBeginPositionO31465145) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1156) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31465MF_00313146, 1, (STRLEN(?targetMotifMatchCigarO31465MF_00313146) - STRLEN(REPLACE(?targetMotifMatchCigarO31465MF_00313146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31465MF_00313146, 1, (STRLEN(?targetMotifMatchCigarO31465MF_00313146) - STRLEN(REPLACE(?targetMotifMatchCigarO31465MF_00313146, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1156), '}'), '')))), '[^-]', ''))) AS ?step2157) .
BIND(((?step2157 + ?targetMotifMatchRegionMatchBeginPositionMF_00313147) - 1) AS ?thisPositionOn53) .
BIND(?thisPositionOn53 AS ?thisPositionOn54) .
BIND(?this AS ?pfs2t158) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn54))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn53, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00313a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch163 faldo:location ?templateMotifSequenceMatchRegionO31465164 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO31465166 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO31465MF_00313159 .
?templateMotifSequenceMatchRegionO31465164 faldo:begin ?templateMotifSequenceMatchBeginO31465165 .
?templateMotifSequenceMatchBeginO31465165 faldo:position ?templateMotifSequenceMatchBeginPositionO31465160 ;
faldo:reference isoform:O31465-1 .
?templateMotifSequenceProfileAlignmentOperationO31465166 edam:has_input signature:MF_00313 ;
rdf:type edam:operation_0300 .
?targetMotifMatch167 faldo:location ?targetMotifMatchRegionMatch168 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00313170 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO31465MF_00313161 .
?targetMotifMatchRegionMatch168 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00313169 .
?targetMotifMatchRegionMatchBeginMF_00313169 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00313162 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00313170 edam:has_input signature:MF_00313 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO31465MF_00313159, 1, (STRLEN(?templateMotifCigarO31465MF_00313159) - STRLEN(REPLACE(?templateMotifCigarO31465MF_00313159, CONCAT('^(?:-*[^-]){', STR(((271 - ?templateMotifSequenceMatchBeginPositionO31465160) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO31465MF_00313161, 1, (STRLEN(?targetMotifMatchCigarO31465MF_00313161) - STRLEN(REPLACE(?targetMotifMatchCigarO31465MF_00313161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO31465MF_00313161, 1, (STRLEN(?targetMotifMatchCigarO31465MF_00313161) - STRLEN(REPLACE(?targetMotifMatchCigarO31465MF_00313161, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1171), '}'), '')))), '[^-]', ''))) AS ?step2172) .
BIND(((?step2172 + ?targetMotifMatchRegionMatchBeginPositionMF_00313162) - 1) AS ?thisPositionOn61) .
BIND(?thisPositionOn61 AS ?thisPositionOn62) .
BIND(?this AS ?pfs2t173) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn61))) AS ?pfsb57) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfse58) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn61, 1) = 'V')) .
BIND(URI(CONCAT(STR(?this), '#MF_00313a56')) AS ?annotation56) .
BIND(?this AS ?pfs55) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch179 faldo:location ?templateMotifSequenceMatchRegionP77454180 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP77454182 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP77454MF_00313175 .
?templateMotifSequenceMatchRegionP77454180 faldo:begin ?templateMotifSequenceMatchBeginP77454181 .
?templateMotifSequenceMatchBeginP77454181 faldo:position ?templateMotifSequenceMatchBeginPositionP77454176 ;
faldo:reference isoform:P77454-1 .
?templateMotifSequenceProfileAlignmentOperationP77454182 edam:has_input signature:MF_00313 ;
rdf:type edam:operation_0300 .
?targetMotifMatch183 faldo:location ?targetMotifMatchRegionMatch184 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00313186 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP77454MF_00313177 .
?targetMotifMatchRegionMatch184 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00313185 .
?targetMotifMatchRegionMatchBeginMF_00313185 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00313178 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00313186 edam:has_input signature:MF_00313 ;
rdf:type edam:operation_0300 .
VALUES ?supertaxon174 {taxon:561 taxon:620}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon174 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP77454MF_00313175, 1, (STRLEN(?templateMotifCigarP77454MF_00313175) - STRLEN(REPLACE(?templateMotifCigarP77454MF_00313175, CONCAT('^(?:-*[^-]){', STR(((294 - ?templateMotifSequenceMatchBeginPositionP77454176) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1187) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP77454MF_00313177, 1, (STRLEN(?targetMotifMatchCigarP77454MF_00313177) - STRLEN(REPLACE(?targetMotifMatchCigarP77454MF_00313177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP77454MF_00313177, 1, (STRLEN(?targetMotifMatchCigarP77454MF_00313177) - STRLEN(REPLACE(?targetMotifMatchCigarP77454MF_00313177, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1187), '}'), '')))), '[^-]', ''))) AS ?step2188) .
BIND(((?step2188 + ?targetMotifMatchRegionMatchBeginPositionMF_00313178) - 1) AS ?thisPositionOn67) .
BIND(?thisPositionOn67 AS ?thisPositionOn68) .
BIND(?this AS ?pfs3t189) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn67))) AS ?pfsb65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn68))) AS ?pfse66) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn67, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00313a64')) AS ?annotation64) .
BIND(?this AS ?pfs63) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag190) .
}
BIND(IF(BOUND(?tagFT_1), ?caseWithTag190, ?UNBOUND_VARIABLE) AS ?case6) .
}
"xsd:string |
