| http://purl.uniprot.org/unirules/MF_00418#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:164073 up:source unirule:MF_00418 .
_:164074 up:source unirule:MF_00418 .
_:164075 up:source unirule:MF_00418 .
_:164076 up:source unirule:MF_00418 .
_:164077 up:source unirule:MF_00418 .
_:164078 up:source unirule:MF_00418 .
_:164079 up:source unirule:MF_00418 .
_:164080 up:source unirule:MF_00418 .
_:164081 up:source unirule:MF_00418 .
_:164082 up:source unirule:MF_00418 .
_:164083 up:source unirule:MF_00418 .
_:164084 up:source unirule:MF_00418 .
_:164085 up:source unirule:MF_00418 .
_:164086 up:source unirule:MF_00418 .
_:164087 up:source unirule:MF_00418 .
_:164088 up:source unirule:MF_00418 .
_:164089 up:source unirule:MF_00418 .
_:164090 up:source unirule:MF_00418 .
_:164091 up:source unirule:MF_00418 .
_:164092 up:source unirule:MF_00418 .
_:164093 up:source unirule:MF_00418 .
_:164094 up:source unirule:MF_00418 .
_:164095 up:source unirule:MF_00418 .
_:164096 up:source unirule:MF_00418 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation8 ,
?annotation9 ;
up:classifiedWith GO:0005737 ,
GO:0008840 ,
GO:0009089 ,
GO:0019877 ,
keyword:220 ,
keyword:28 ,
keyword:456 ,
keyword:457 ,
keyword:704 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '4.3.3.7' ;
up:fullName '4-hydroxy-tetrahydrodipicolinate synthase' ;
up:shortName 'HTPA synthase' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'dapA' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 3/4.' .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the DapA family.' .
?annotation9 a up:Caution_Annotation ;
rdfs:comment 'Was originally thought to be a dihydrodipicolinate synthase (DHDPS), catalyzing the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to dihydrodipicolinate (DHDP). However, it was shown in E.coli that the product of the enzymatic reaction is not dihydrodipicolinate but in fact (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinic acid (HTPA), and that the consecutive dehydration reaction leading to DHDP is not spontaneous but catalyzed by DapB.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Proton donor/acceptor' .
?pfsb14 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Schiff-base intermediate with substrate' .
?pfsb20 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?pfs24 up:annotation ?annotation25 .
?annotation25 faldo:begin ?pfsb26 ;
faldo:end ?pfse27 ;
up:ligand ?ligand28 ;
rdf:type up:Binding_Site_Annotation .
?pfsb26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?pfse27 faldo:position ?thisPositionOn30 ;
rdf:type faldo:ExactPosition .
?ligand28 rdfs:subClassOf chebi:15361 .
?pfs31 up:annotation ?annotation32 .
?annotation32 faldo:begin ?pfsb33 ;
faldo:end ?pfse34 ;
up:ligand ?ligand35 ;
rdf:type up:Binding_Site_Annotation .
?pfsb33 faldo:position ?thisPositionOn36 ;
rdf:type faldo:ExactPosition .
?pfse34 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?ligand35 rdfs:subClassOf chebi:15361 .
?pfs38 up:annotation ?annotation39 .
?annotation39 faldo:begin ?pfsb40 ;
faldo:end ?pfse41 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Part of a proton relay during catalysis' .
?pfsb40 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?pfse41 faldo:position ?thisPositionOn43 ;
rdf:type faldo:ExactPosition .
?pfs44 up:annotation ?annotation45 .
?annotation45 faldo:begin ?pfsb46 ;
faldo:end ?pfse47 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Part of a proton relay during catalysis' .
?pfsb46 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse47 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
_:164097 a rdf:Statement ;
up:attribution _:164073 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:164098 a rdf:Statement ;
up:attribution _:164074 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:164099 a rdf:Statement ;
up:attribution _:164075 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:164100 a rdf:Statement ;
up:attribution _:164076 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:164101 a rdf:Statement ;
up:attribution _:164077 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:164102 a rdf:Statement ;
up:attribution _:164078 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:164103 a rdf:Statement ;
up:attribution _:164079 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:164104 a rdf:Statement ;
up:attribution _:164080 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:164105 a rdf:Statement ;
up:attribution _:164081 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:164106 a rdf:Statement ;
up:attribution _:164082 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:28 .
_:164107 a rdf:Statement ;
up:attribution _:164083 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:220 .
_:164108 a rdf:Statement ;
up:attribution _:164084 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:456 .
_:164109 a rdf:Statement ;
up:attribution _:164085 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:457 .
_:164110 a rdf:Statement ;
up:attribution _:164086 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:704 .
_:164111 a rdf:Statement ;
up:attribution _:164087 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008840 .
_:164112 a rdf:Statement ;
up:attribution _:164088 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019877 .
_:164113 a rdf:Statement ;
up:attribution _:164089 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0009089 .
_:164114 a rdf:Statement ;
up:attribution _:164090 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:164115 a rdf:Statement ;
up:source unirule:MF_00418 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:164116 a rdf:Statement ;
up:attribution _:164091 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:164117 a rdf:Statement ;
up:source unirule:MF_00418 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:164118 a rdf:Statement ;
up:attribution _:164092 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:164119 a rdf:Statement ;
up:source unirule:MF_00418 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:164120 a rdf:Statement ;
up:attribution _:164093 ;
rdf:subject ?pfs24 ;
rdf:predicate up:annotation ;
rdf:object ?annotation25 .
_:164121 a rdf:Statement ;
up:source unirule:MF_00418 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:164122 a rdf:Statement ;
up:attribution _:164094 ;
rdf:subject ?pfs31 ;
rdf:predicate up:annotation ;
rdf:object ?annotation32 .
_:164123 a rdf:Statement ;
up:source unirule:MF_00418 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:164124 a rdf:Statement ;
up:attribution _:164095 ;
rdf:subject ?pfs38 ;
rdf:predicate up:annotation ;
rdf:object ?annotation39 .
_:164125 a rdf:Statement ;
up:source unirule:MF_00418 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
_:164126 a rdf:Statement ;
up:attribution _:164096 ;
rdf:subject ?pfs44 ;
rdf:predicate up:annotation ;
rdf:object ?annotation45 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00418
#Rule MF_00418 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
VALUES ?supertaxon50 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00418 .
?thisOrganism rdfs:subClassOf+ ?supertaxon50 .
FILTER (! (EXISTS {
?this rdfs:seeAlso signature:MF_01237 .
})) .
BIND(URI(CONCAT(STR(?this), '#MF_00418a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00418a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00418a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00418a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00418a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00418a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00418a9')) AS ?annotation9) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch55 faldo:location ?templateMotifSequenceMatchRegionP0A6L256 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6L258 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6L2MF_0041851 .
?templateMotifSequenceMatchRegionP0A6L256 faldo:begin ?templateMotifSequenceMatchBeginP0A6L257 .
?templateMotifSequenceMatchBeginP0A6L257 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6L252 ;
faldo:reference isoform:P0A6L2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6L258 edam:has_input signature:MF_00418 ;
rdf:type edam:operation_0300 .
?targetMotifMatch59 faldo:location ?targetMotifMatchRegionMatch60 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0041862 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6L2MF_0041853 .
?targetMotifMatchRegionMatch60 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0041861 .
?targetMotifMatchRegionMatchBeginMF_0041861 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0041854 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0041862 edam:has_input signature:MF_00418 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6L2MF_0041851, 1, (STRLEN(?templateMotifCigarP0A6L2MF_0041851) - STRLEN(REPLACE(?templateMotifCigarP0A6L2MF_0041851, CONCAT('^(?:-*[^-]){', STR(((133 - ?templateMotifSequenceMatchBeginPositionP0A6L252) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6L2MF_0041853, 1, (STRLEN(?targetMotifMatchCigarP0A6L2MF_0041853) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6L2MF_0041853, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6L2MF_0041853, 1, (STRLEN(?targetMotifMatchCigarP0A6L2MF_0041853) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6L2MF_0041853, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0041854) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse15) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00418a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionP0A6L271 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6L273 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6L2MF_0041866 .
?templateMotifSequenceMatchRegionP0A6L271 faldo:begin ?templateMotifSequenceMatchBeginP0A6L272 .
?templateMotifSequenceMatchBeginP0A6L272 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6L267 ;
faldo:reference isoform:P0A6L2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6L273 edam:has_input signature:MF_00418 ;
rdf:type edam:operation_0300 .
?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0041877 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6L2MF_0041868 .
?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0041876 .
?targetMotifMatchRegionMatchBeginMF_0041876 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0041869 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0041877 edam:has_input signature:MF_00418 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6L2MF_0041866, 1, (STRLEN(?templateMotifCigarP0A6L2MF_0041866) - STRLEN(REPLACE(?templateMotifCigarP0A6L2MF_0041866, CONCAT('^(?:-*[^-]){', STR(((161 - ?templateMotifSequenceMatchBeginPositionP0A6L267) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6L2MF_0041868, 1, (STRLEN(?targetMotifMatchCigarP0A6L2MF_0041868) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6L2MF_0041868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6L2MF_0041868, 1, (STRLEN(?targetMotifMatchCigarP0A6L2MF_0041868) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6L2MF_0041868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0041869) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse21) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'K')) .
BIND(URI(CONCAT(STR(?this), '#MF_00418a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch85 faldo:location ?templateMotifSequenceMatchRegionP0A6L286 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6L288 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6L2MF_0041881 .
?templateMotifSequenceMatchRegionP0A6L286 faldo:begin ?templateMotifSequenceMatchBeginP0A6L287 .
?templateMotifSequenceMatchBeginP0A6L287 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6L282 ;
faldo:reference isoform:P0A6L2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6L288 edam:has_input signature:MF_00418 ;
rdf:type edam:operation_0300 .
?targetMotifMatch89 faldo:location ?targetMotifMatchRegionMatch90 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0041892 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6L2MF_0041883 .
?targetMotifMatchRegionMatch90 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0041891 .
?targetMotifMatchRegionMatchBeginMF_0041891 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0041884 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0041892 edam:has_input signature:MF_00418 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6L2MF_0041881, 1, (STRLEN(?templateMotifCigarP0A6L2MF_0041881) - STRLEN(REPLACE(?templateMotifCigarP0A6L2MF_0041881, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP0A6L282) + 1)), '}'), '')))), '[a-z]', '')) AS ?step193) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6L2MF_0041883, 1, (STRLEN(?targetMotifMatchCigarP0A6L2MF_0041883) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6L2MF_0041883, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6L2MF_0041883, 1, (STRLEN(?targetMotifMatchCigarP0A6L2MF_0041883) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6L2MF_0041883, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step193), '}'), '')))), '[^-]', ''))) AS ?step294) .
BIND(((?step294 + ?targetMotifMatchRegionMatchBeginPositionMF_0041884) - 1) AS ?thisPositionOn29) .
BIND(?thisPositionOn29 AS ?thisPositionOn30) .
BIND(?this AS ?pfs1t95) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfsb26) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn30))) AS ?pfse27) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn29, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00418a25')) AS ?annotation25) .
BIND(?this AS ?pfs24) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch100 faldo:location ?templateMotifSequenceMatchRegionP0A6L2101 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6L2103 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6L2MF_0041896 .
?templateMotifSequenceMatchRegionP0A6L2101 faldo:begin ?templateMotifSequenceMatchBeginP0A6L2102 .
?templateMotifSequenceMatchBeginP0A6L2102 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6L297 ;
faldo:reference isoform:P0A6L2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6L2103 edam:has_input signature:MF_00418 ;
rdf:type edam:operation_0300 .
?targetMotifMatch104 faldo:location ?targetMotifMatchRegionMatch105 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00418107 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6L2MF_0041898 .
?targetMotifMatchRegionMatch105 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00418106 .
?targetMotifMatchRegionMatchBeginMF_00418106 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0041899 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00418107 edam:has_input signature:MF_00418 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6L2MF_0041896, 1, (STRLEN(?templateMotifCigarP0A6L2MF_0041896) - STRLEN(REPLACE(?templateMotifCigarP0A6L2MF_0041896, CONCAT('^(?:-*[^-]){', STR(((203 - ?templateMotifSequenceMatchBeginPositionP0A6L297) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6L2MF_0041898, 1, (STRLEN(?targetMotifMatchCigarP0A6L2MF_0041898) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6L2MF_0041898, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6L2MF_0041898, 1, (STRLEN(?targetMotifMatchCigarP0A6L2MF_0041898) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6L2MF_0041898, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) .
BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0041899) - 1) AS ?thisPositionOn36) .
BIND(?thisPositionOn36 AS ?thisPositionOn37) .
BIND(?this AS ?pfs1t110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn36))) AS ?pfsb33) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfse34) .
FILTER (REGEX('[IVAT]', SUBSTR(?thisSequenceValue, ?thisPositionOn36, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00418a32')) AS ?annotation32) .
BIND(?this AS ?pfs31) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionP0A6L2116 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6L2118 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6L2MF_00418111 .
?templateMotifSequenceMatchRegionP0A6L2116 faldo:begin ?templateMotifSequenceMatchBeginP0A6L2117 .
?templateMotifSequenceMatchBeginP0A6L2117 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6L2112 ;
faldo:reference isoform:P0A6L2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6L2118 edam:has_input signature:MF_00418 ;
rdf:type edam:operation_0300 .
?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00418122 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6L2MF_00418113 .
?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00418121 .
?targetMotifMatchRegionMatchBeginMF_00418121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00418114 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00418122 edam:has_input signature:MF_00418 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6L2MF_00418111, 1, (STRLEN(?templateMotifCigarP0A6L2MF_00418111) - STRLEN(REPLACE(?templateMotifCigarP0A6L2MF_00418111, CONCAT('^(?:-*[^-]){', STR(((44 - ?templateMotifSequenceMatchBeginPositionP0A6L2112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6L2MF_00418113, 1, (STRLEN(?targetMotifMatchCigarP0A6L2MF_00418113) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6L2MF_00418113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6L2MF_00418113, 1, (STRLEN(?targetMotifMatchCigarP0A6L2MF_00418113) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6L2MF_00418113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_00418114) - 1) AS ?thisPositionOn42) .
BIND(?thisPositionOn42 AS ?thisPositionOn43) .
BIND(?this AS ?pfs1t125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfsb40) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn43))) AS ?pfse41) .
FILTER (REGEX('[TS]', SUBSTR(?thisSequenceValue, ?thisPositionOn42, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00418a39')) AS ?annotation39) .
BIND(?this AS ?pfs38) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionP0A6L2131 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0A6L2133 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP0A6L2MF_00418126 .
?templateMotifSequenceMatchRegionP0A6L2131 faldo:begin ?templateMotifSequenceMatchBeginP0A6L2132 .
?templateMotifSequenceMatchBeginP0A6L2132 faldo:position ?templateMotifSequenceMatchBeginPositionP0A6L2127 ;
faldo:reference isoform:P0A6L2-1 .
?templateMotifSequenceProfileAlignmentOperationP0A6L2133 edam:has_input signature:MF_00418 ;
rdf:type edam:operation_0300 .
?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00418137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP0A6L2MF_00418128 .
?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00418136 .
?targetMotifMatchRegionMatchBeginMF_00418136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00418129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00418137 edam:has_input signature:MF_00418 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP0A6L2MF_00418126, 1, (STRLEN(?templateMotifCigarP0A6L2MF_00418126) - STRLEN(REPLACE(?templateMotifCigarP0A6L2MF_00418126, CONCAT('^(?:-*[^-]){', STR(((107 - ?templateMotifSequenceMatchBeginPositionP0A6L2127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP0A6L2MF_00418128, 1, (STRLEN(?targetMotifMatchCigarP0A6L2MF_00418128) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6L2MF_00418128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP0A6L2MF_00418128, 1, (STRLEN(?targetMotifMatchCigarP0A6L2MF_00418128) - STRLEN(REPLACE(?targetMotifMatchCigarP0A6L2MF_00418128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_00418129) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb46) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse47) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'Y')) .
BIND(URI(CONCAT(STR(?this), '#MF_00418a45')) AS ?annotation45) .
BIND(?this AS ?pfs44) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
VALUES ?supertaxon141 {taxon:2 taxon:2157}
?thisOrganism rdfs:subClassOf+ ?supertaxon141 .
})) .
} UNION {
VALUES ?supertaxon142 {taxon:1279 taxon:286}
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ ?supertaxon142 .
}
BIND(?this AS ?case10) .
}
OPTIONAL {
?this a up:Protein .
{
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
FILTER (! (EXISTS {
VALUES ?supertaxon143 {taxon:1279 taxon:286}
?thisOrganism rdfs:subClassOf+ ?supertaxon143 .
})) .
} UNION {
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
}
BIND(?this AS ?case11) .
}
}
"xsd:string |
