| http://purl.uniprot.org/unirules/MF_00554#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:216221 up:source unirule:MF_00554 .
_:216222 up:source unirule:MF_00554 .
_:216223 up:source unirule:MF_00554 .
_:216224 up:source unirule:MF_00554 .
_:216225 up:source unirule:MF_00554 .
_:216226 up:source unirule:MF_00554 .
_:216227 up:source unirule:MF_00554 .
_:216228 up:source unirule:MF_00554 .
_:216229 up:source unirule:MF_00554 .
_:216230 up:source unirule:MF_00554 .
_:216231 up:source unirule:MF_00554 .
_:216232 up:source unirule:MF_00554 .
_:216233 up:source unirule:MF_00554 .
_:216234 up:source unirule:MF_00554 .
_:216235 up:source unirule:MF_00554 .
_:216236 up:source unirule:MF_00554 .
_:216237 up:source unirule:MF_00554 .
_:216238 up:source unirule:MF_00554 .
_:216239 up:source unirule:MF_00554 .
_:216240 up:source unirule:MF_00554 .
_:216241 up:source unirule:MF_00554 .
_:216242 up:source unirule:MF_00554 .
_:216243 up:source unirule:MF_00554 .
_:216244 up:source unirule:MF_00554 .
_:216245 up:source unirule:MF_00554 .
_:216246 up:source unirule:MF_00554 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0006364 ,
GO:0019843 ,
GO:0042254 ,
GO:0070037 ,
keyword:489 ,
keyword:690 ,
keyword:694 ,
keyword:698 ,
keyword:699 ,
keyword:808 ,
keyword:949 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.1.1.-' ;
up:fullName 'Ribosomal RNA small subunit methyltransferase Nep1' ;
rdf:type up:Structured_Name .
?name1 up:fullName '16S rRNA (pseudouridine-N1-)-methyltransferase Nep1' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'nep1' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase NEP1 family.' .
?pfs8 up:annotation ?annotation9 .
?annotation9 faldo:begin ?pfsb10 ;
faldo:end ?pfse11 ;
up:ligand ?ligand12 ;
rdf:type up:Binding_Site_Annotation .
?pfsb10 faldo:position ?thisPositionOn13 ;
rdf:type faldo:ExactPosition .
?pfse11 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?ligand12 rdfs:subClassOf chebi:59789 .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:59789 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:59789 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with substrate rRNA' .
?pfsb31 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfs35 up:annotation ?annotation36 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Stabilizes Arg-xx' .
?pfsb37 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with substrate rRNA' .
?pfsb43 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfs47 up:annotation ?annotation48 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with substrate rRNA' .
?pfsb49 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
rdf:type up:Site_Annotation ;
rdfs:comment 'Interaction with substrate rRNA' .
?pfsb55 faldo:position ?thisPositionOn57 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
_:216247 a rdf:Statement ;
up:attribution _:216221 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:216248 a rdf:Statement ;
up:attribution _:216222 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:216249 a rdf:Statement ;
up:attribution _:216223 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:216250 a rdf:Statement ;
up:attribution _:216224 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:216251 a rdf:Statement ;
up:attribution _:216225 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:216252 a rdf:Statement ;
up:attribution _:216226 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:216253 a rdf:Statement ;
up:attribution _:216227 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:216254 a rdf:Statement ;
up:attribution _:216228 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:216255 a rdf:Statement ;
up:attribution _:216229 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:690 .
_:216256 a rdf:Statement ;
up:attribution _:216230 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:216257 a rdf:Statement ;
up:attribution _:216231 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:699 .
_:216258 a rdf:Statement ;
up:attribution _:216232 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:698 .
_:216259 a rdf:Statement ;
up:attribution _:216233 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:216260 a rdf:Statement ;
up:attribution _:216234 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:216261 a rdf:Statement ;
up:attribution _:216235 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0019843 .
_:216262 a rdf:Statement ;
up:attribution _:216236 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0070037 .
_:216263 a rdf:Statement ;
up:attribution _:216237 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042254 .
_:216264 a rdf:Statement ;
up:attribution _:216238 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006364 .
_:216265 a rdf:Statement ;
up:source unirule:MF_00554 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:216266 a rdf:Statement ;
up:attribution _:216239 ;
rdf:subject ?pfs8 ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:216267 a rdf:Statement ;
up:source unirule:MF_00554 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:216268 a rdf:Statement ;
up:attribution _:216240 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:216269 a rdf:Statement ;
up:source unirule:MF_00554 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:216270 a rdf:Statement ;
up:attribution _:216241 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:216271 a rdf:Statement ;
up:source unirule:MF_00554 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:216272 a rdf:Statement ;
up:attribution _:216242 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:216273 a rdf:Statement ;
up:source unirule:MF_00554 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:216274 a rdf:Statement ;
up:attribution _:216243 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:216275 a rdf:Statement ;
up:source unirule:MF_00554 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:216276 a rdf:Statement ;
up:attribution _:216244 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:216277 a rdf:Statement ;
up:source unirule:MF_00554 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:216278 a rdf:Statement ;
up:attribution _:216245 ;
rdf:subject ?pfs47 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:216279 a rdf:Statement ;
up:source unirule:MF_00554 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:216280 a rdf:Statement ;
up:attribution _:216246 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00554
#Rule MF_00554 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00554 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00554a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00554a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00554a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00554a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00554a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00554a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch63 faldo:location ?templateMotifSequenceMatchRegionQ5797764 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5797766 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57977MF_0055459 .
?templateMotifSequenceMatchRegionQ5797764 faldo:begin ?templateMotifSequenceMatchBeginQ5797765 .
?templateMotifSequenceMatchBeginQ5797765 faldo:position ?templateMotifSequenceMatchBeginPositionQ5797760 ;
faldo:reference isoform:Q57977-1 .
?templateMotifSequenceProfileAlignmentOperationQ5797766 edam:has_input signature:MF_00554 ;
rdf:type edam:operation_0300 .
?targetMotifMatch67 faldo:location ?targetMotifMatchRegionMatch68 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0055470 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57977MF_0055461 .
?targetMotifMatchRegionMatch68 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0055469 .
?targetMotifMatchRegionMatchBeginMF_0055469 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055462 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0055470 edam:has_input signature:MF_00554 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57977MF_0055459, 1, (STRLEN(?templateMotifCigarQ57977MF_0055459) - STRLEN(REPLACE(?templateMotifCigarQ57977MF_0055459, CONCAT('^(?:-*[^-]){', STR(((185 - ?templateMotifSequenceMatchBeginPositionQ5797760) + 1)), '}'), '')))), '[a-z]', '')) AS ?step171) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57977MF_0055461, 1, (STRLEN(?targetMotifMatchCigarQ57977MF_0055461) - STRLEN(REPLACE(?targetMotifMatchCigarQ57977MF_0055461, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57977MF_0055461, 1, (STRLEN(?targetMotifMatchCigarQ57977MF_0055461) - STRLEN(REPLACE(?targetMotifMatchCigarQ57977MF_0055461, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step171), '}'), '')))), '[^-]', ''))) AS ?step272) .
BIND(((?step272 + ?targetMotifMatchRegionMatchBeginPositionMF_0055462) - 1) AS ?thisPositionOn13) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57977MF_0055459, 1, (STRLEN(?templateMotifCigarQ57977MF_0055459) - STRLEN(REPLACE(?templateMotifCigarQ57977MF_0055459, CONCAT('^(?:-*[^-]){', STR(((190 - ?templateMotifSequenceMatchBeginPositionQ5797760) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57977MF_0055461, 1, (STRLEN(?targetMotifMatchCigarQ57977MF_0055461) - STRLEN(REPLACE(?targetMotifMatchCigarQ57977MF_0055461, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57977MF_0055461, 1, (STRLEN(?targetMotifMatchCigarQ57977MF_0055461) - STRLEN(REPLACE(?targetMotifMatchCigarQ57977MF_0055461, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0055462) - 1) AS ?thisPositionOn14) .
BIND(?this AS ?pfs1t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn13))) AS ?pfsb10) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfse11) .
FILTER ((BOUND(?thisPositionOn13) && BOUND(?thisPositionOn14))) .
BIND(URI(CONCAT(STR(?this), '#MF_00554a9')) AS ?annotation9) .
BIND(?this AS ?pfs8) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch80 faldo:location ?templateMotifSequenceMatchRegionQ5797781 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5797783 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57977MF_0055476 .
?templateMotifSequenceMatchRegionQ5797781 faldo:begin ?templateMotifSequenceMatchBeginQ5797782 .
?templateMotifSequenceMatchBeginQ5797782 faldo:position ?templateMotifSequenceMatchBeginPositionQ5797777 ;
faldo:reference isoform:Q57977-1 .
?templateMotifSequenceProfileAlignmentOperationQ5797783 edam:has_input signature:MF_00554 ;
rdf:type edam:operation_0300 .
?targetMotifMatch84 faldo:location ?targetMotifMatchRegionMatch85 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0055487 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57977MF_0055478 .
?targetMotifMatchRegionMatch85 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0055486 .
?targetMotifMatchRegionMatchBeginMF_0055486 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055479 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0055487 edam:has_input signature:MF_00554 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57977MF_0055476, 1, (STRLEN(?templateMotifCigarQ57977MF_0055476) - STRLEN(REPLACE(?templateMotifCigarQ57977MF_0055476, CONCAT('^(?:-*[^-]){', STR(((162 - ?templateMotifSequenceMatchBeginPositionQ5797777) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57977MF_0055478, 1, (STRLEN(?targetMotifMatchCigarQ57977MF_0055478) - STRLEN(REPLACE(?targetMotifMatchCigarQ57977MF_0055478, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57977MF_0055478, 1, (STRLEN(?targetMotifMatchCigarQ57977MF_0055478) - STRLEN(REPLACE(?targetMotifMatchCigarQ57977MF_0055478, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0055479) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00554a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch95 faldo:location ?templateMotifSequenceMatchRegionQ5797796 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ5797798 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57977MF_0055491 .
?templateMotifSequenceMatchRegionQ5797796 faldo:begin ?templateMotifSequenceMatchBeginQ5797797 .
?templateMotifSequenceMatchBeginQ5797797 faldo:position ?templateMotifSequenceMatchBeginPositionQ5797792 ;
faldo:reference isoform:Q57977-1 .
?templateMotifSequenceProfileAlignmentOperationQ5797798 edam:has_input signature:MF_00554 ;
rdf:type edam:operation_0300 .
?targetMotifMatch99 faldo:location ?targetMotifMatchRegionMatch100 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00554102 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57977MF_0055493 .
?targetMotifMatchRegionMatch100 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00554101 .
?targetMotifMatchRegionMatchBeginMF_00554101 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055494 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00554102 edam:has_input signature:MF_00554 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57977MF_0055491, 1, (STRLEN(?templateMotifCigarQ57977MF_0055491) - STRLEN(REPLACE(?templateMotifCigarQ57977MF_0055491, CONCAT('^(?:-*[^-]){', STR(((167 - ?templateMotifSequenceMatchBeginPositionQ5797792) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1103) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57977MF_0055493, 1, (STRLEN(?targetMotifMatchCigarQ57977MF_0055493) - STRLEN(REPLACE(?targetMotifMatchCigarQ57977MF_0055493, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57977MF_0055493, 1, (STRLEN(?targetMotifMatchCigarQ57977MF_0055493) - STRLEN(REPLACE(?targetMotifMatchCigarQ57977MF_0055493, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1103), '}'), '')))), '[^-]', ''))) AS ?step2104) .
BIND(((?step2104 + ?targetMotifMatchRegionMatchBeginPositionMF_0055494) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t105) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00554a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch110 faldo:location ?templateMotifSequenceMatchRegionQ57977111 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57977113 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57977MF_00554106 .
?templateMotifSequenceMatchRegionQ57977111 faldo:begin ?templateMotifSequenceMatchBeginQ57977112 .
?templateMotifSequenceMatchBeginQ57977112 faldo:position ?templateMotifSequenceMatchBeginPositionQ57977107 ;
faldo:reference isoform:Q57977-1 .
?templateMotifSequenceProfileAlignmentOperationQ57977113 edam:has_input signature:MF_00554 ;
rdf:type edam:operation_0300 .
?targetMotifMatch114 faldo:location ?targetMotifMatchRegionMatch115 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00554117 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57977MF_00554108 .
?targetMotifMatchRegionMatch115 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00554116 .
?targetMotifMatchRegionMatchBeginMF_00554116 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00554109 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00554117 edam:has_input signature:MF_00554 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57977MF_00554106, 1, (STRLEN(?templateMotifCigarQ57977MF_00554106) - STRLEN(REPLACE(?templateMotifCigarQ57977MF_00554106, CONCAT('^(?:-*[^-]){', STR(((54 - ?templateMotifSequenceMatchBeginPositionQ57977107) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1118) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57977MF_00554108, 1, (STRLEN(?targetMotifMatchCigarQ57977MF_00554108) - STRLEN(REPLACE(?targetMotifMatchCigarQ57977MF_00554108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57977MF_00554108, 1, (STRLEN(?targetMotifMatchCigarQ57977MF_00554108) - STRLEN(REPLACE(?targetMotifMatchCigarQ57977MF_00554108, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1118), '}'), '')))), '[^-]', ''))) AS ?step2119) .
BIND(((?step2119 + ?targetMotifMatchRegionMatchBeginPositionMF_00554109) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t120) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00554a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch125 faldo:location ?templateMotifSequenceMatchRegionQ57977126 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57977128 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57977MF_00554121 .
?templateMotifSequenceMatchRegionQ57977126 faldo:begin ?templateMotifSequenceMatchBeginQ57977127 .
?templateMotifSequenceMatchBeginQ57977127 faldo:position ?templateMotifSequenceMatchBeginPositionQ57977122 ;
faldo:reference isoform:Q57977-1 .
?templateMotifSequenceProfileAlignmentOperationQ57977128 edam:has_input signature:MF_00554 ;
rdf:type edam:operation_0300 .
?targetMotifMatch129 faldo:location ?targetMotifMatchRegionMatch130 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00554132 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57977MF_00554123 .
?targetMotifMatchRegionMatch130 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00554131 .
?targetMotifMatchRegionMatchBeginMF_00554131 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00554124 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00554132 edam:has_input signature:MF_00554 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57977MF_00554121, 1, (STRLEN(?templateMotifCigarQ57977MF_00554121) - STRLEN(REPLACE(?templateMotifCigarQ57977MF_00554121, CONCAT('^(?:-*[^-]){', STR(((56 - ?templateMotifSequenceMatchBeginPositionQ57977122) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1133) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57977MF_00554123, 1, (STRLEN(?targetMotifMatchCigarQ57977MF_00554123) - STRLEN(REPLACE(?targetMotifMatchCigarQ57977MF_00554123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57977MF_00554123, 1, (STRLEN(?targetMotifMatchCigarQ57977MF_00554123) - STRLEN(REPLACE(?targetMotifMatchCigarQ57977MF_00554123, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1133), '}'), '')))), '[^-]', ''))) AS ?step2134) .
BIND(((?step2134 + ?targetMotifMatchRegionMatchBeginPositionMF_00554124) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t135) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00554a36')) AS ?annotation36) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch140 faldo:location ?templateMotifSequenceMatchRegionQ57977141 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57977143 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57977MF_00554136 .
?templateMotifSequenceMatchRegionQ57977141 faldo:begin ?templateMotifSequenceMatchBeginQ57977142 .
?templateMotifSequenceMatchBeginQ57977142 faldo:position ?templateMotifSequenceMatchBeginPositionQ57977137 ;
faldo:reference isoform:Q57977-1 .
?templateMotifSequenceProfileAlignmentOperationQ57977143 edam:has_input signature:MF_00554 ;
rdf:type edam:operation_0300 .
?targetMotifMatch144 faldo:location ?targetMotifMatchRegionMatch145 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00554147 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57977MF_00554138 .
?targetMotifMatchRegionMatch145 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00554146 .
?targetMotifMatchRegionMatchBeginMF_00554146 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00554139 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00554147 edam:has_input signature:MF_00554 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57977MF_00554136, 1, (STRLEN(?templateMotifCigarQ57977MF_00554136) - STRLEN(REPLACE(?templateMotifCigarQ57977MF_00554136, CONCAT('^(?:-*[^-]){', STR(((95 - ?templateMotifSequenceMatchBeginPositionQ57977137) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1148) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57977MF_00554138, 1, (STRLEN(?targetMotifMatchCigarQ57977MF_00554138) - STRLEN(REPLACE(?targetMotifMatchCigarQ57977MF_00554138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57977MF_00554138, 1, (STRLEN(?targetMotifMatchCigarQ57977MF_00554138) - STRLEN(REPLACE(?targetMotifMatchCigarQ57977MF_00554138, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1148), '}'), '')))), '[^-]', ''))) AS ?step2149) .
BIND(((?step2149 + ?targetMotifMatchRegionMatchBeginPositionMF_00554139) - 1) AS ?thisPositionOn45) .
BIND(?thisPositionOn45 AS ?thisPositionOn46) .
BIND(?this AS ?pfs1t150) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfse44) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn45, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00554a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch155 faldo:location ?templateMotifSequenceMatchRegionQ57977156 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57977158 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57977MF_00554151 .
?templateMotifSequenceMatchRegionQ57977156 faldo:begin ?templateMotifSequenceMatchBeginQ57977157 .
?templateMotifSequenceMatchBeginQ57977157 faldo:position ?templateMotifSequenceMatchBeginPositionQ57977152 ;
faldo:reference isoform:Q57977-1 .
?templateMotifSequenceProfileAlignmentOperationQ57977158 edam:has_input signature:MF_00554 ;
rdf:type edam:operation_0300 .
?targetMotifMatch159 faldo:location ?targetMotifMatchRegionMatch160 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00554162 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57977MF_00554153 .
?targetMotifMatchRegionMatch160 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00554161 .
?targetMotifMatchRegionMatchBeginMF_00554161 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00554154 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00554162 edam:has_input signature:MF_00554 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57977MF_00554151, 1, (STRLEN(?templateMotifCigarQ57977MF_00554151) - STRLEN(REPLACE(?templateMotifCigarQ57977MF_00554151, CONCAT('^(?:-*[^-]){', STR(((98 - ?templateMotifSequenceMatchBeginPositionQ57977152) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57977MF_00554153, 1, (STRLEN(?targetMotifMatchCigarQ57977MF_00554153) - STRLEN(REPLACE(?targetMotifMatchCigarQ57977MF_00554153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57977MF_00554153, 1, (STRLEN(?targetMotifMatchCigarQ57977MF_00554153) - STRLEN(REPLACE(?targetMotifMatchCigarQ57977MF_00554153, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1163), '}'), '')))), '[^-]', ''))) AS ?step2164) .
BIND(((?step2164 + ?targetMotifMatchRegionMatchBeginPositionMF_00554154) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t165) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse50) .
FILTER (REGEX('[RK]', SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00554a48')) AS ?annotation48) .
BIND(?this AS ?pfs47) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch170 faldo:location ?templateMotifSequenceMatchRegionQ57977171 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ57977173 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ57977MF_00554166 .
?templateMotifSequenceMatchRegionQ57977171 faldo:begin ?templateMotifSequenceMatchBeginQ57977172 .
?templateMotifSequenceMatchBeginQ57977172 faldo:position ?templateMotifSequenceMatchBeginPositionQ57977167 ;
faldo:reference isoform:Q57977-1 .
?templateMotifSequenceProfileAlignmentOperationQ57977173 edam:has_input signature:MF_00554 ;
rdf:type edam:operation_0300 .
?targetMotifMatch174 faldo:location ?targetMotifMatchRegionMatch175 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00554177 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ57977MF_00554168 .
?targetMotifMatchRegionMatch175 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00554176 .
?targetMotifMatchRegionMatchBeginMF_00554176 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00554169 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00554177 edam:has_input signature:MF_00554 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ57977MF_00554166, 1, (STRLEN(?templateMotifCigarQ57977MF_00554166) - STRLEN(REPLACE(?templateMotifCigarQ57977MF_00554166, CONCAT('^(?:-*[^-]){', STR(((102 - ?templateMotifSequenceMatchBeginPositionQ57977167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ57977MF_00554168, 1, (STRLEN(?targetMotifMatchCigarQ57977MF_00554168) - STRLEN(REPLACE(?targetMotifMatchCigarQ57977MF_00554168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ57977MF_00554168, 1, (STRLEN(?targetMotifMatchCigarQ57977MF_00554168) - STRLEN(REPLACE(?targetMotifMatchCigarQ57977MF_00554168, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1178), '}'), '')))), '[^-]', ''))) AS ?step2179) .
BIND(((?step2179 + ?targetMotifMatchRegionMatchBeginPositionMF_00554169) - 1) AS ?thisPositionOn57) .
BIND(?thisPositionOn57 AS ?thisPositionOn58) .
BIND(?this AS ?pfs1t180) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn57))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfse56) .
FILTER (REGEX('[RN]', SUBSTR(?thisSequenceValue, ?thisPositionOn57, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00554a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
}
"xsd:string |
