| http://purl.uniprot.org/unirules/MF_00559#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:218392 up:source unirule:MF_00559 .
_:218393 up:source unirule:MF_00559 .
_:218394 up:source unirule:MF_00559 .
_:218395 up:source unirule:MF_00559 .
_:218396 up:source unirule:MF_00559 .
_:218397 up:source unirule:MF_00559 .
_:218398 up:source unirule:MF_00559 .
_:218399 up:source unirule:MF_00559 .
_:218400 up:source unirule:MF_00559 .
_:218401 up:source unirule:MF_00559 .
_:218402 up:source unirule:MF_00559 .
_:218403 up:source unirule:MF_00559 .
_:218404 up:source unirule:MF_00559 .
_:218405 up:source unirule:MF_00559 .
_:218406 up:source unirule:MF_00559 .
_:218407 up:source unirule:MF_00559 .
_:218408 up:source unirule:MF_00559 .
_:218409 up:source unirule:MF_00559 .
_:218410 up:source unirule:MF_00559 .
_:218411 up:source unirule:MF_00559 .
_:218412 up:source unirule:MF_00559 .
_:218413 up:source unirule:MF_00559 .
_:218414 up:source unirule:MF_00559 .
_:218415 up:source unirule:MF_00559 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation5 ,
?annotation7 ,
?annotation8 ,
?annotation9 ,
?annotation11 ;
up:classifiedWith GO:0004365 ,
GO:0005737 ,
GO:0006096 ,
keyword:324 ,
keyword:520 ,
keyword:521 ,
keyword:560 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '1.2.1.59' ;
up:fullName 'Glyceraldehyde-3-phosphate dehydrogenase' ;
up:shortName 'GAPDH' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'gap' .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:activity ?activity6 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity6 up:catalyticActivity ;
up:enzymeClass .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 1/5.' .
?annotation8 a up:Subunit_Annotation ;
rdfs:comment 'Homotetramer.' .
?annotation9 a up:Subcellular_Location_Annotation .
?annotation9li10 up:cellularComponent .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.' .
?pfs12 up:annotation ?annotation13 .
?annotation13 faldo:begin ?pfsb14 ;
faldo:end ?pfse15 ;
up:ligand ?ligand16 ;
rdf:type up:Binding_Site_Annotation .
?pfsb14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?pfse15 faldo:position ?thisPositionOn18 ;
rdf:type faldo:ExactPosition .
?ligand16 rdfs:subClassOf chebi:57540 .
?pfs19 up:annotation ?annotation20 .
?annotation20 faldo:begin ?pfsb21 ;
faldo:end ?pfse22 ;
up:ligand ?ligand23 ;
rdf:type up:Binding_Site_Annotation .
?pfsb21 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand23 rdfs:subClassOf chebi:59776 .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:59776 .
?pfs33 up:annotation ?annotation34 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile' .
?pfsb35 faldo:position ?thisPositionOn37 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfs39 up:annotation ?annotation40 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:57540 .
?pfs46 up:annotation ?annotation47 .
?annotation47 faldo:begin ?pfsb48 ;
faldo:end ?pfse49 ;
up:ligand ?ligand50 ;
rdf:type up:Binding_Site_Annotation .
?pfsb48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?pfse49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?ligand50 rdfs:subClassOf chebi:57540 .
?pfs53 up:annotation ?annotation54 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:57540 .
_:218416 a rdf:Statement ;
up:attribution _:218392 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:218417 a rdf:Statement ;
up:attribution _:218393 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:218418 a rdf:Statement ;
up:attribution _:218394 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:218419 a rdf:Statement ;
up:attribution _:218395 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:218420 a rdf:Statement ;
up:attribution _:218396 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:218421 a rdf:Statement ;
up:attribution _:218397 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:218422 a rdf:Statement ;
up:attribution _:218398 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:218423 a rdf:Statement ;
up:attribution _:218399 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:218424 a rdf:Statement ;
up:attribution _:218400 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:218425 a rdf:Statement ;
up:attribution _:218401 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:218426 a rdf:Statement ;
up:attribution _:218402 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:324 .
_:218427 a rdf:Statement ;
up:attribution _:218403 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:520 .
_:218428 a rdf:Statement ;
up:attribution _:218404 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:521 .
_:218429 a rdf:Statement ;
up:attribution _:218405 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:560 .
_:218430 a rdf:Statement ;
up:attribution _:218406 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0004365 .
_:218431 a rdf:Statement ;
up:attribution _:218407 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006096 .
_:218432 a rdf:Statement ;
up:attribution _:218408 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:218433 a rdf:Statement ;
up:source unirule:MF_00559 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:218434 a rdf:Statement ;
up:attribution _:218409 ;
rdf:subject ?pfs12 ;
rdf:predicate up:annotation ;
rdf:object ?annotation13 .
_:218435 a rdf:Statement ;
up:source unirule:MF_00559 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:218436 a rdf:Statement ;
up:attribution _:218410 ;
rdf:subject ?pfs19 ;
rdf:predicate up:annotation ;
rdf:object ?annotation20 .
_:218437 a rdf:Statement ;
up:source unirule:MF_00559 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:218438 a rdf:Statement ;
up:attribution _:218411 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:218439 a rdf:Statement ;
up:source unirule:MF_00559 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:218440 a rdf:Statement ;
up:attribution _:218412 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:218441 a rdf:Statement ;
up:source unirule:MF_00559 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:218442 a rdf:Statement ;
up:attribution _:218413 ;
rdf:subject ?pfs39 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:218443 a rdf:Statement ;
up:source unirule:MF_00559 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:218444 a rdf:Statement ;
up:attribution _:218414 ;
rdf:subject ?pfs46 ;
rdf:predicate up:annotation ;
rdf:object ?annotation47 .
_:218445 a rdf:Statement ;
up:source unirule:MF_00559 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:218446 a rdf:Statement ;
up:attribution _:218415 ;
rdf:subject ?pfs53 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00559
#Rule MF_00559 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-03
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00559 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00559a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00559a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00559a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00559a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00559a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00559a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00559a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00559a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch64 faldo:location ?templateMotifSequenceMatchRegionO5949465 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5949467 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO59494MF_0055960 .
?templateMotifSequenceMatchRegionO5949465 faldo:begin ?templateMotifSequenceMatchBeginO5949466 .
?templateMotifSequenceMatchBeginO5949466 faldo:position ?templateMotifSequenceMatchBeginPositionO5949461 ;
faldo:reference isoform:O59494-1 .
?templateMotifSequenceProfileAlignmentOperationO5949467 edam:has_input signature:MF_00559 ;
rdf:type edam:operation_0300 .
?targetMotifMatch68 faldo:location ?targetMotifMatchRegionMatch69 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0055971 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO59494MF_0055962 .
?targetMotifMatchRegionMatch69 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0055970 .
?targetMotifMatchRegionMatchBeginMF_0055970 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055963 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0055971 edam:has_input signature:MF_00559 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59494MF_0055960, 1, (STRLEN(?templateMotifCigarO59494MF_0055960) - STRLEN(REPLACE(?templateMotifCigarO59494MF_0055960, CONCAT('^(?:-*[^-]){', STR(((12 - ?templateMotifSequenceMatchBeginPositionO5949461) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59494MF_0055962, 1, (STRLEN(?targetMotifMatchCigarO59494MF_0055962) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_0055962, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59494MF_0055962, 1, (STRLEN(?targetMotifMatchCigarO59494MF_0055962) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_0055962, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0055963) - 1) AS ?thisPositionOn17) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59494MF_0055960, 1, (STRLEN(?templateMotifCigarO59494MF_0055960) - STRLEN(REPLACE(?templateMotifCigarO59494MF_0055960, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionO5949461) + 1)), '}'), '')))), '[a-z]', '')) AS ?step174) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59494MF_0055962, 1, (STRLEN(?targetMotifMatchCigarO59494MF_0055962) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_0055962, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59494MF_0055962, 1, (STRLEN(?targetMotifMatchCigarO59494MF_0055962) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_0055962, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step174), '}'), '')))), '[^-]', ''))) AS ?step275) .
BIND(((?step275 + ?targetMotifMatchRegionMatchBeginPositionMF_0055963) - 1) AS ?thisPositionOn18) .
BIND(?this AS ?pfs1t76) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfsb14) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn18))) AS ?pfse15) .
FILTER (REGEX('[TS][IV]', SUBSTR(?thisSequenceValue, ?thisPositionOn17, (?thisPositionOn18 - ?thisPositionOn17)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00559a13')) AS ?annotation13) .
BIND(?this AS ?pfs12) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch81 faldo:location ?templateMotifSequenceMatchRegionO5949482 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO5949484 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO59494MF_0055977 .
?templateMotifSequenceMatchRegionO5949482 faldo:begin ?templateMotifSequenceMatchBeginO5949483 .
?templateMotifSequenceMatchBeginO5949483 faldo:position ?templateMotifSequenceMatchBeginPositionO5949478 ;
faldo:reference isoform:O59494-1 .
?templateMotifSequenceProfileAlignmentOperationO5949484 edam:has_input signature:MF_00559 ;
rdf:type edam:operation_0300 .
?targetMotifMatch85 faldo:location ?targetMotifMatchRegionMatch86 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0055988 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO59494MF_0055979 .
?targetMotifMatchRegionMatch86 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0055987 .
?targetMotifMatchRegionMatchBeginMF_0055987 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055980 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0055988 edam:has_input signature:MF_00559 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59494MF_0055977, 1, (STRLEN(?templateMotifCigarO59494MF_0055977) - STRLEN(REPLACE(?templateMotifCigarO59494MF_0055977, CONCAT('^(?:-*[^-]){', STR(((140 - ?templateMotifSequenceMatchBeginPositionO5949478) + 1)), '}'), '')))), '[a-z]', '')) AS ?step189) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59494MF_0055979, 1, (STRLEN(?targetMotifMatchCigarO59494MF_0055979) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_0055979, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59494MF_0055979, 1, (STRLEN(?targetMotifMatchCigarO59494MF_0055979) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_0055979, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step189), '}'), '')))), '[^-]', ''))) AS ?step290) .
BIND(((?step290 + ?targetMotifMatchRegionMatchBeginPositionMF_0055980) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59494MF_0055977, 1, (STRLEN(?templateMotifCigarO59494MF_0055977) - STRLEN(REPLACE(?templateMotifCigarO59494MF_0055977, CONCAT('^(?:-*[^-]){', STR(((142 - ?templateMotifSequenceMatchBeginPositionO5949478) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59494MF_0055979, 1, (STRLEN(?targetMotifMatchCigarO59494MF_0055979) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_0055979, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59494MF_0055979, 1, (STRLEN(?targetMotifMatchCigarO59494MF_0055979) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_0055979, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0055980) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb21) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse22) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn24, (?thisPositionOn25 - ?thisPositionOn24)) = 'SCN')) .
BIND(URI(CONCAT(STR(?this), '#MF_00559a20')) AS ?annotation20) .
BIND(?this AS ?pfs19) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionO5949499 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO59494101 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO59494MF_0055994 .
?templateMotifSequenceMatchRegionO5949499 faldo:begin ?templateMotifSequenceMatchBeginO59494100 .
?templateMotifSequenceMatchBeginO59494100 faldo:position ?templateMotifSequenceMatchBeginPositionO5949495 ;
faldo:reference isoform:O59494-1 .
?templateMotifSequenceProfileAlignmentOperationO59494101 edam:has_input signature:MF_00559 ;
rdf:type edam:operation_0300 .
?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00559105 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO59494MF_0055996 .
?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00559104 .
?targetMotifMatchRegionMatchBeginMF_00559104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0055997 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00559105 edam:has_input signature:MF_00559 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59494MF_0055994, 1, (STRLEN(?templateMotifCigarO59494MF_0055994) - STRLEN(REPLACE(?templateMotifCigarO59494MF_0055994, CONCAT('^(?:-*[^-]){', STR(((192 - ?templateMotifSequenceMatchBeginPositionO5949495) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59494MF_0055996, 1, (STRLEN(?targetMotifMatchCigarO59494MF_0055996) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_0055996, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59494MF_0055996, 1, (STRLEN(?targetMotifMatchCigarO59494MF_0055996) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_0055996, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) .
BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0055997) - 1) AS ?thisPositionOn31) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59494MF_0055994, 1, (STRLEN(?templateMotifCigarO59494MF_0055994) - STRLEN(REPLACE(?templateMotifCigarO59494MF_0055994, CONCAT('^(?:-*[^-]){', STR(((193 - ?templateMotifSequenceMatchBeginPositionO5949495) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1108) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59494MF_0055996, 1, (STRLEN(?targetMotifMatchCigarO59494MF_0055996) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_0055996, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59494MF_0055996, 1, (STRLEN(?targetMotifMatchCigarO59494MF_0055996) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_0055996, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1108), '}'), '')))), '[^-]', ''))) AS ?step2109) .
BIND(((?step2109 + ?targetMotifMatchRegionMatchBeginPositionMF_0055997) - 1) AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t110) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER (REGEX('H[AG]', SUBSTR(?thisSequenceValue, ?thisPositionOn31, (?thisPositionOn32 - ?thisPositionOn31)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00559a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch115 faldo:location ?templateMotifSequenceMatchRegionO59494116 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO59494118 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO59494MF_00559111 .
?templateMotifSequenceMatchRegionO59494116 faldo:begin ?templateMotifSequenceMatchBeginO59494117 .
?templateMotifSequenceMatchBeginO59494117 faldo:position ?templateMotifSequenceMatchBeginPositionO59494112 ;
faldo:reference isoform:O59494-1 .
?templateMotifSequenceProfileAlignmentOperationO59494118 edam:has_input signature:MF_00559 ;
rdf:type edam:operation_0300 .
?targetMotifMatch119 faldo:location ?targetMotifMatchRegionMatch120 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00559122 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO59494MF_00559113 .
?targetMotifMatchRegionMatch120 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00559121 .
?targetMotifMatchRegionMatchBeginMF_00559121 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00559114 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00559122 edam:has_input signature:MF_00559 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59494MF_00559111, 1, (STRLEN(?templateMotifCigarO59494MF_00559111) - STRLEN(REPLACE(?templateMotifCigarO59494MF_00559111, CONCAT('^(?:-*[^-]){', STR(((141 - ?templateMotifSequenceMatchBeginPositionO59494112) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1123) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59494MF_00559113, 1, (STRLEN(?targetMotifMatchCigarO59494MF_00559113) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_00559113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59494MF_00559113, 1, (STRLEN(?targetMotifMatchCigarO59494MF_00559113) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_00559113, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1123), '}'), '')))), '[^-]', ''))) AS ?step2124) .
BIND(((?step2124 + ?targetMotifMatchRegionMatchBeginPositionMF_00559114) - 1) AS ?thisPositionOn37) .
BIND(?thisPositionOn37 AS ?thisPositionOn38) .
BIND(?this AS ?pfs1t125) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn37))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn37, 1) = 'C')) .
BIND(URI(CONCAT(STR(?this), '#MF_00559a34')) AS ?annotation34) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch130 faldo:location ?templateMotifSequenceMatchRegionO59494131 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO59494133 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO59494MF_00559126 .
?templateMotifSequenceMatchRegionO59494131 faldo:begin ?templateMotifSequenceMatchBeginO59494132 .
?templateMotifSequenceMatchBeginO59494132 faldo:position ?templateMotifSequenceMatchBeginPositionO59494127 ;
faldo:reference isoform:O59494-1 .
?templateMotifSequenceProfileAlignmentOperationO59494133 edam:has_input signature:MF_00559 ;
rdf:type edam:operation_0300 .
?targetMotifMatch134 faldo:location ?targetMotifMatchRegionMatch135 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00559137 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO59494MF_00559128 .
?targetMotifMatchRegionMatch135 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00559136 .
?targetMotifMatchRegionMatchBeginMF_00559136 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00559129 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00559137 edam:has_input signature:MF_00559 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59494MF_00559126, 1, (STRLEN(?templateMotifCigarO59494MF_00559126) - STRLEN(REPLACE(?templateMotifCigarO59494MF_00559126, CONCAT('^(?:-*[^-]){', STR(((111 - ?templateMotifSequenceMatchBeginPositionO59494127) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1138) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59494MF_00559128, 1, (STRLEN(?targetMotifMatchCigarO59494MF_00559128) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_00559128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59494MF_00559128, 1, (STRLEN(?targetMotifMatchCigarO59494MF_00559128) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_00559128, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1138), '}'), '')))), '[^-]', ''))) AS ?step2139) .
BIND(((?step2139 + ?targetMotifMatchRegionMatchBeginPositionMF_00559129) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs1t140) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00559a40')) AS ?annotation40) .
BIND(?this AS ?pfs39) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch145 faldo:location ?templateMotifSequenceMatchRegionO59494146 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO59494148 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO59494MF_00559141 .
?templateMotifSequenceMatchRegionO59494146 faldo:begin ?templateMotifSequenceMatchBeginO59494147 .
?templateMotifSequenceMatchBeginO59494147 faldo:position ?templateMotifSequenceMatchBeginPositionO59494142 ;
faldo:reference isoform:O59494-1 .
?templateMotifSequenceProfileAlignmentOperationO59494148 edam:has_input signature:MF_00559 ;
rdf:type edam:operation_0300 .
?targetMotifMatch149 faldo:location ?targetMotifMatchRegionMatch150 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00559152 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO59494MF_00559143 .
?targetMotifMatchRegionMatch150 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00559151 .
?targetMotifMatchRegionMatchBeginMF_00559151 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00559144 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00559152 edam:has_input signature:MF_00559 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59494MF_00559141, 1, (STRLEN(?templateMotifCigarO59494MF_00559141) - STRLEN(REPLACE(?templateMotifCigarO59494MF_00559141, CONCAT('^(?:-*[^-]){', STR(((167 - ?templateMotifSequenceMatchBeginPositionO59494142) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1153) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59494MF_00559143, 1, (STRLEN(?targetMotifMatchCigarO59494MF_00559143) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_00559143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59494MF_00559143, 1, (STRLEN(?targetMotifMatchCigarO59494MF_00559143) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_00559143, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1153), '}'), '')))), '[^-]', ''))) AS ?step2154) .
BIND(((?step2154 + ?targetMotifMatchRegionMatchBeginPositionMF_00559144) - 1) AS ?thisPositionOn51) .
BIND(?thisPositionOn51 AS ?thisPositionOn52) .
BIND(?this AS ?pfs1t155) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfsb48) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfse49) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn51, 1) = 'R')) .
BIND(URI(CONCAT(STR(?this), '#MF_00559a47')) AS ?annotation47) .
BIND(?this AS ?pfs46) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch160 faldo:location ?templateMotifSequenceMatchRegionO59494161 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationO59494163 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarO59494MF_00559156 .
?templateMotifSequenceMatchRegionO59494161 faldo:begin ?templateMotifSequenceMatchBeginO59494162 .
?templateMotifSequenceMatchBeginO59494162 faldo:position ?templateMotifSequenceMatchBeginPositionO59494157 ;
faldo:reference isoform:O59494-1 .
?templateMotifSequenceProfileAlignmentOperationO59494163 edam:has_input signature:MF_00559 ;
rdf:type edam:operation_0300 .
?targetMotifMatch164 faldo:location ?targetMotifMatchRegionMatch165 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00559167 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarO59494MF_00559158 .
?targetMotifMatchRegionMatch165 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00559166 .
?targetMotifMatchRegionMatchBeginMF_00559166 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00559159 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00559167 edam:has_input signature:MF_00559 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarO59494MF_00559156, 1, (STRLEN(?templateMotifCigarO59494MF_00559156) - STRLEN(REPLACE(?templateMotifCigarO59494MF_00559156, CONCAT('^(?:-*[^-]){', STR(((298 - ?templateMotifSequenceMatchBeginPositionO59494157) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1168) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarO59494MF_00559158, 1, (STRLEN(?targetMotifMatchCigarO59494MF_00559158) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_00559158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarO59494MF_00559158, 1, (STRLEN(?targetMotifMatchCigarO59494MF_00559158) - STRLEN(REPLACE(?targetMotifMatchCigarO59494MF_00559158, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1168), '}'), '')))), '[^-]', ''))) AS ?step2169) .
BIND(((?step2169 + ?targetMotifMatchRegionMatchBeginPositionMF_00559159) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t170) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'Q')) .
BIND(URI(CONCAT(STR(?this), '#MF_00559a54')) AS ?annotation54) .
BIND(?this AS ?pfs53) .
}
}
"xsd:string |
