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http://purl.uniprot.org/unirules/MF_00594#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00594#construct-template-28
http://purl.uniprot.org/unirules/MF_00594#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00594#construct-template-82
http://purl.uniprot.org/unirules/MF_00594#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00594#construct-template-137
http://purl.uniprot.org/unirules/MF_00594#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00594#construct-template-141
http://purl.uniprot.org/unirules/MF_00594#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00594#construct-template-145
http://purl.uniprot.org/unirules/MF_00594#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00594#construct-template-143
http://purl.uniprot.org/unirules/MF_00594#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00594#construct-template-123
http://purl.uniprot.org/unirules/MF_00594#constructhttps://hamap.expasy.org/rdf/vocab#addsTriplehttp://purl.uniprot.org/unirules/MF_00594#construct-template-139
http://purl.uniprot.org/unirules/MF_00594#constructhttp://www.w3.org/ns/shacl#prefixeshttp://purl.uniprot.org/unirules/
http://purl.uniprot.org/unirules/MF_00594#constructhttp://spinrdf.org/sp#wherehttp://purl.uniprot.org/unirules/MF_00594#construct-where-list-0
http://purl.uniprot.org/unirules/MF_00594#constructhttp://spinrdf.org/sp#templateshttp://purl.uniprot.org/unirules/MF_00594#construct-template-list-0
http://purl.uniprot.org/unirules/MF_00594#constructhttp://www.w3.org/ns/shacl#construct"CONSTRUCT { _:231364 up:source unirule:MF_00594 . _:231365 up:source unirule:MF_00594 . _:231366 up:source unirule:MF_00594 . _:231367 up:source unirule:MF_00594 . _:231368 up:source unirule:MF_00594 . _:231369 up:source unirule:MF_00594 . _:231370 up:source unirule:MF_00594 . _:231371 up:source unirule:MF_00594 . _:231372 up:source unirule:MF_00594 . _:231373 up:source unirule:MF_00594 . _:231374 up:source unirule:MF_00594 . _:231375 up:source unirule:MF_00594 . _:231376 up:source unirule:MF_00594 . _:231377 up:source unirule:MF_00594 . _:231378 up:source unirule:MF_00594 . _:231379 up:source unirule:MF_00594 . _:231380 up:source unirule:MF_00594 . _:231381 up:source unirule:MF_00594 . _:231382 up:source unirule:MF_00594 . _:231383 up:source unirule:MF_00594 . _:231384 up:source unirule:MF_00594 . _:231385 up:source unirule:MF_00594 . _:231386 up:source unirule:MF_00594 . _:231387 up:source unirule:MF_00594 . _:231388 up:source unirule:MF_00594 . _:231389 up:source unirule:MF_00594 . _:231390 up:source unirule:MF_00594 . _:231391 up:source unirule:MF_00594 . _:231392 up:source unirule:MF_00594 . ?this up:alternativeName ?name1 , ?name2 , ?name3 ; up:annotation ?annotation5 , ?annotation6 , ?annotation7 , ?annotation8 ; up:classifiedWith GO:0009055 , GO:0015979 , keyword:249 , keyword:349 , keyword:408 , keyword:479 , keyword:602 , keyword:732 , keyword:813 ; up:precursor "true"^^xsd:boolean ; up:recommendedName ?name0 . ?name0 up:fullName 'Cytochrome c6' ; rdf:type up:Structured_Name . ?name1 up:fullName 'Cytochrome c-553' ; rdf:type up:Structured_Name . ?name2 up:fullName 'Cytochrome c553' ; rdf:type up:Structured_Name . ?name3 up:fullName 'Soluble cytochrome f' ; rdf:type up:Structured_Name . ?gene4 skos:prefLabel 'petJ' . ?annotation5 a up:Function_Annotation ; rdfs:comment 'Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.' . ?annotation6 a up:Subunit_Annotation ; rdfs:comment 'Monomer.' . ?annotation7 a up:PTM_Annotation ; rdfs:comment 'Binds 1 heme c group per subunit.' . ?annotation8 a up:Similarity_Annotation ; rdfs:comment 'Belongs to the cytochrome c family. PetJ subfamily.' . ?case9 up:classifiedWith GO:0009543 . ?case10 up:classifiedWith keyword:574 . ?case11 up:classifiedWith keyword:793 . ?case12 up:classifiedWith GO:0042597 . ?case13 up:classifiedWith GO:0031977 . ?pfs14 up:annotation ?annotation15 . ?annotation15 faldo:begin ?pfsb16 ; faldo:end ?pfse17 ; up:ligand ?ligand18 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'axial binding residue' . ?pfsb16 faldo:position ?thisPositionOn19 ; rdf:type faldo:ExactPosition . ?pfse17 faldo:position ?thisPositionOn20 ; rdf:type faldo:ExactPosition . ?ligand18 up:ligandPart ?ligand18 ; rdfs:subClassOf chebi:18248 , chebi:61717 . ?pfs21 up:annotation ?annotation22 . ?annotation22 faldo:begin ?pfsb23 ; faldo:end ?pfse24 ; up:ligand ?ligand25 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'axial binding residue' . ?pfsb23 faldo:position ?thisPositionOn26 ; rdf:type faldo:ExactPosition . ?pfse24 faldo:position ?thisPositionOn27 ; rdf:type faldo:ExactPosition . ?ligand25 up:ligandPart ?ligand25 ; rdfs:subClassOf chebi:18248 , chebi:61717 . ?pfs28 up:annotation ?annotation29 . ?annotation29 faldo:begin ?pfsb30 ; faldo:end ?pfse31 ; up:ligand ?ligand32 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'covalent' . ?pfsb30 faldo:position ?thisPositionOn33 ; rdf:type faldo:ExactPosition . ?pfse31 faldo:position ?thisPositionOn34 ; rdf:type faldo:ExactPosition . ?ligand32 rdfs:subClassOf chebi:61717 . ?pfs35 up:annotation ?annotation36 . ?annotation36 faldo:begin ?pfsb37 ; faldo:end ?pfse38 ; up:ligand ?ligand39 ; rdf:type up:Binding_Site_Annotation ; rdfs:comment 'covalent' . ?pfsb37 faldo:position ?thisPositionOn40 ; rdf:type faldo:ExactPosition . ?pfse38 faldo:position ?thisPositionOn41 ; rdf:type faldo:ExactPosition . ?ligand39 rdfs:subClassOf chebi:61717 . ?sam42 up:classifiedWith keyword:732 . ?signal43 faldo:begin ?signalb44 ; faldo:end ?signale45 . ?signalb44 faldo:position ?signalbp46 . ?signale45 faldo:position ?signalep47 . ?keyword48 up:range ?signal43 . _:231393 a rdf:Statement ; up:attribution _:231364 ; rdf:subject ?this ; rdf:predicate up:recommendedName ; rdf:object ?name0 . _:231394 a rdf:Statement ; up:attribution _:231365 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name1 . _:231395 a rdf:Statement ; up:attribution _:231366 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name2 . _:231396 a rdf:Statement ; up:attribution _:231367 ; rdf:subject ?this ; rdf:predicate up:alternativeName ; rdf:object ?name3 . _:231397 a rdf:Statement ; up:attribution _:231368 ; rdf:subject ?this ; rdf:predicate up:precursor ; rdf:object "true"^^xsd:boolean . _:231398 a rdf:Statement ; up:attribution _:231369 ; rdf:subject ?gene4 ; rdf:predicate up:encodedBy ; rdf:object ?gene4 . _:231399 a rdf:Statement ; up:attribution _:231370 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation5 . _:231400 a rdf:Statement ; up:attribution _:231371 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation6 . _:231401 a rdf:Statement ; up:attribution _:231372 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation7 . _:231402 a rdf:Statement ; up:attribution _:231373 ; rdf:subject ?this ; rdf:predicate up:annotation ; rdf:object ?annotation8 . _:231403 a rdf:Statement ; up:attribution _:231374 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:813 . _:231404 a rdf:Statement ; up:attribution _:231375 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:249 . _:231405 a rdf:Statement ; up:attribution _:231376 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:602 . _:231406 a rdf:Statement ; up:attribution _:231377 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:349 . _:231407 a rdf:Statement ; up:attribution _:231378 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:408 . _:231408 a rdf:Statement ; up:attribution _:231379 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:479 . _:231409 a rdf:Statement ; up:attribution _:231380 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object keyword:732 . _:231410 a rdf:Statement ; up:attribution _:231381 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0009055 . _:231411 a rdf:Statement ; up:attribution _:231382 ; rdf:subject ?this ; rdf:predicate up:classifiedWith ; rdf:object GO:0015979 . _:231412 a rdf:Statement ; up:attribution _:231383 ; rdf:subject ?case9 ; rdf:predicate up:classifiedWith ; rdf:object GO:0009543 . _:231413 a rdf:Statement ; up:attribution _:231384 ; rdf:subject ?case10 ; rdf:predicate up:classifiedWith ; rdf:object keyword:574 . _:231414 a rdf:Statement ; up:attribution _:231385 ; rdf:subject ?case11 ; rdf:predicate up:classifiedWith ; rdf:object keyword:793 . _:231415 a rdf:Statement ; up:attribution _:231386 ; rdf:subject ?case12 ; rdf:predicate up:classifiedWith ; rdf:object GO:0042597 . _:231416 a rdf:Statement ; up:attribution _:231387 ; rdf:subject ?case13 ; rdf:predicate up:classifiedWith ; rdf:object GO:0031977 . _:231417 a rdf:Statement ; up:source unirule:MF_00594 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:231418 a rdf:Statement ; up:attribution _:231388 ; rdf:subject ?pfs14 ; rdf:predicate up:annotation ; rdf:object ?annotation15 . _:231419 a rdf:Statement ; up:source unirule:MF_00594 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:231420 a rdf:Statement ; up:attribution _:231389 ; rdf:subject ?pfs21 ; rdf:predicate up:annotation ; rdf:object ?annotation22 . _:231421 a rdf:Statement ; up:source unirule:MF_00594 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:231422 a rdf:Statement ; up:attribution _:231390 ; rdf:subject ?pfs28 ; rdf:predicate up:annotation ; rdf:object ?annotation29 . _:231423 a rdf:Statement ; up:source unirule:MF_00594 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:231424 a rdf:Statement ; up:attribution _:231391 ; rdf:subject ?pfs35 ; rdf:predicate up:annotation ; rdf:object ?annotation36 . _:231425 a rdf:Statement ; up:attribution _:231392 ; rdf:subject ?sam42 ; rdf:predicate up:classifiedWith ; rdf:object keyword:732 . } WHERE { #baseURI: http://purl.uniprot.org/unirule/MF_00594 #Rule MF_00594 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2023-02-17 { ?this up:organism ?thisOrganism ; rdfs:seeAlso signature:MF_00594 . ?thisOrganism rdfs:subClassOf+ taxon:1117 . } UNION { ?this rdfs:seeAlso signature:MF_00594 . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } UNION { ?this up:encodedIn up:Cyanelle . } UNION { ?this up:encodedIn up:Apicoplast . } UNION { ?this up:encodedIn up:Organellar_chromatophore . } UNION { ?this up:encodedIn up:Non-photosynthetic_plastid . } } BIND(URI(CONCAT(STR(?this), '#MF_00594a0')) AS ?name0) . BIND(URI(CONCAT(STR(?this), '#MF_00594a1')) AS ?name1) . BIND(URI(CONCAT(STR(?this), '#MF_00594a2')) AS ?name2) . BIND(URI(CONCAT(STR(?this), '#MF_00594a3')) AS ?name3) . BIND(URI(CONCAT(STR(?this), '#MF_00594a5')) AS ?annotation5) . BIND(URI(CONCAT(STR(?this), '#MF_00594a6')) AS ?annotation6) . BIND(URI(CONCAT(STR(?this), '#MF_00594a7')) AS ?annotation7) . BIND(URI(CONCAT(STR(?this), '#MF_00594a8')) AS ?annotation8) . OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch53 faldo:location ?templateMotifSequenceMatchRegionP0011854 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0011856 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00118MF_0059449 . ?templateMotifSequenceMatchRegionP0011854 faldo:begin ?templateMotifSequenceMatchBeginP0011855 . ?templateMotifSequenceMatchBeginP0011855 faldo:position ?templateMotifSequenceMatchBeginPositionP0011850 ; faldo:reference isoform:P00118-1 . ?templateMotifSequenceProfileAlignmentOperationP0011856 edam:has_input signature:MF_00594 ; rdf:type edam:operation_0300 . ?targetMotifMatch57 faldo:location ?targetMotifMatchRegionMatch58 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0059460 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00118MF_0059451 . ?targetMotifMatchRegionMatch58 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0059459 . ?targetMotifMatchRegionMatchBeginMF_0059459 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0059452 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0059460 edam:has_input signature:MF_00594 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00118MF_0059449, 1, (STRLEN(?templateMotifCigarP00118MF_0059449) - STRLEN(REPLACE(?templateMotifCigarP00118MF_0059449, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionP0011850) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00118MF_0059451, 1, (STRLEN(?targetMotifMatchCigarP00118MF_0059451) - STRLEN(REPLACE(?targetMotifMatchCigarP00118MF_0059451, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00118MF_0059451, 1, (STRLEN(?targetMotifMatchCigarP00118MF_0059451) - STRLEN(REPLACE(?targetMotifMatchCigarP00118MF_0059451, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) . BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0059452) - 1) AS ?thisPositionOn19) . BIND(?thisPositionOn19 AS ?thisPositionOn20) . BIND(?this AS ?pfs1t63) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'H')) . BIND(URI(CONCAT(STR(?this), '#MF_00594a15')) AS ?annotation15) . BIND(?this AS ?pfs14) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch68 faldo:location ?templateMotifSequenceMatchRegionP0011869 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0011871 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00118MF_0059464 . ?templateMotifSequenceMatchRegionP0011869 faldo:begin ?templateMotifSequenceMatchBeginP0011870 . ?templateMotifSequenceMatchBeginP0011870 faldo:position ?templateMotifSequenceMatchBeginPositionP0011865 ; faldo:reference isoform:P00118-1 . ?templateMotifSequenceProfileAlignmentOperationP0011871 edam:has_input signature:MF_00594 ; rdf:type edam:operation_0300 . ?targetMotifMatch72 faldo:location ?targetMotifMatchRegionMatch73 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0059475 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00118MF_0059466 . ?targetMotifMatchRegionMatch73 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0059474 . ?targetMotifMatchRegionMatchBeginMF_0059474 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0059467 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0059475 edam:has_input signature:MF_00594 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00118MF_0059464, 1, (STRLEN(?templateMotifCigarP00118MF_0059464) - STRLEN(REPLACE(?templateMotifCigarP00118MF_0059464, CONCAT('^(?:-*[^-]){', STR(((62 - ?templateMotifSequenceMatchBeginPositionP0011865) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00118MF_0059466, 1, (STRLEN(?targetMotifMatchCigarP00118MF_0059466) - STRLEN(REPLACE(?targetMotifMatchCigarP00118MF_0059466, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00118MF_0059466, 1, (STRLEN(?targetMotifMatchCigarP00118MF_0059466) - STRLEN(REPLACE(?targetMotifMatchCigarP00118MF_0059466, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) . BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0059467) - 1) AS ?thisPositionOn26) . BIND(?thisPositionOn26 AS ?thisPositionOn27) . BIND(?this AS ?pfs1t78) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfsb23) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfse24) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn26, 1) = 'M')) . BIND(URI(CONCAT(STR(?this), '#MF_00594a22')) AS ?annotation22) . BIND(?this AS ?pfs21) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch83 faldo:location ?templateMotifSequenceMatchRegionP0011884 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0011886 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00118MF_0059479 . ?templateMotifSequenceMatchRegionP0011884 faldo:begin ?templateMotifSequenceMatchBeginP0011885 . ?templateMotifSequenceMatchBeginP0011885 faldo:position ?templateMotifSequenceMatchBeginPositionP0011880 ; faldo:reference isoform:P00118-1 . ?templateMotifSequenceProfileAlignmentOperationP0011886 edam:has_input signature:MF_00594 ; rdf:type edam:operation_0300 . ?targetMotifMatch87 faldo:location ?targetMotifMatchRegionMatch88 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0059490 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00118MF_0059481 . ?targetMotifMatchRegionMatch88 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0059489 . ?targetMotifMatchRegionMatchBeginMF_0059489 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0059482 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_0059490 edam:has_input signature:MF_00594 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00118MF_0059479, 1, (STRLEN(?templateMotifCigarP00118MF_0059479) - STRLEN(REPLACE(?templateMotifCigarP00118MF_0059479, CONCAT('^(?:-*[^-]){', STR(((14 - ?templateMotifSequenceMatchBeginPositionP0011880) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00118MF_0059481, 1, (STRLEN(?targetMotifMatchCigarP00118MF_0059481) - STRLEN(REPLACE(?targetMotifMatchCigarP00118MF_0059481, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00118MF_0059481, 1, (STRLEN(?targetMotifMatchCigarP00118MF_0059481) - STRLEN(REPLACE(?targetMotifMatchCigarP00118MF_0059481, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) . BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0059482) - 1) AS ?thisPositionOn33) . BIND(?thisPositionOn33 AS ?thisPositionOn34) . BIND(?this AS ?pfs1t93) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_00594a29')) AS ?annotation29) . BIND(?this AS ?pfs28) . } OPTIONAL { ?this up:sequence ?thisSequence . ?thisSequence rdf:value ?thisSequenceValue . ?templateMotifMatch98 faldo:location ?templateMotifSequenceMatchRegionP0011899 ; edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP00118101 ; rdf:type edam:data_0869 ; rdf:value ?templateMotifCigarP00118MF_0059494 . ?templateMotifSequenceMatchRegionP0011899 faldo:begin ?templateMotifSequenceMatchBeginP00118100 . ?templateMotifSequenceMatchBeginP00118100 faldo:position ?templateMotifSequenceMatchBeginPositionP0011895 ; faldo:reference isoform:P00118-1 . ?templateMotifSequenceProfileAlignmentOperationP00118101 edam:has_input signature:MF_00594 ; rdf:type edam:operation_0300 . ?targetMotifMatch102 faldo:location ?targetMotifMatchRegionMatch103 ; edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00594105 ; rdf:type edam:data_0869 ; rdf:value ?targetMotifMatchCigarP00118MF_0059496 . ?targetMotifMatchRegionMatch103 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00594104 . ?targetMotifMatchRegionMatchBeginMF_00594104 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0059497 ; faldo:reference ?thisSequence . ?targetMotifSequenceAlignmentOperationMF_00594105 edam:has_input signature:MF_00594 ; rdf:type edam:operation_0300 . BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP00118MF_0059494, 1, (STRLEN(?templateMotifCigarP00118MF_0059494) - STRLEN(REPLACE(?templateMotifCigarP00118MF_0059494, CONCAT('^(?:-*[^-]){', STR(((17 - ?templateMotifSequenceMatchBeginPositionP0011895) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1106) . BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP00118MF_0059496, 1, (STRLEN(?targetMotifMatchCigarP00118MF_0059496) - STRLEN(REPLACE(?targetMotifMatchCigarP00118MF_0059496, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP00118MF_0059496, 1, (STRLEN(?targetMotifMatchCigarP00118MF_0059496) - STRLEN(REPLACE(?targetMotifMatchCigarP00118MF_0059496, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1106), '}'), '')))), '[^-]', ''))) AS ?step2107) . BIND(((?step2107 + ?targetMotifMatchRegionMatchBeginPositionMF_0059497) - 1) AS ?thisPositionOn40) . BIND(?thisPositionOn40 AS ?thisPositionOn41) . BIND(?this AS ?pfs1t108) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) . BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) . FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'C')) . BIND(URI(CONCAT(STR(?this), '#MF_00594a36')) AS ?annotation36) . BIND(?this AS ?pfs35) . } OPTIONAL { ?this a up:Protein . { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } BIND(?this AS ?case9) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33071 . BIND(?this AS ?case10) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33071 . })) . BIND(?this AS ?case11) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . ?thisOrganism rdfs:subClassOf+ taxon:33071 . FILTER (! (EXISTS { { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } })) . BIND(?this AS ?case12) . } OPTIONAL { ?this a up:Protein . ?this up:organism ?thisOrganism . FILTER (! (EXISTS { { ?this up:encodedIn up:Plastid . } UNION { ?this up:encodedIn up:Chloroplast . } })) . FILTER (! (EXISTS { ?thisOrganism rdfs:subClassOf+ taxon:33071 . })) . BIND(?this AS ?case13) . } OPTIONAL { ?this up:annotation ?samsignal109 ; up:sequence ?thisSequence . ?samsignal109 up:range ?samsignalr110 ; rdf:type up:Signal_Peptide_Annotation . ?samsignalr110 faldo:begin ?samsignalb111 ; faldo:end ?samsignale112 . ?samsignalb111 faldo:position ?samsignalbp113 ; faldo:reference ?thisSequence . ?samsignale112 faldo:position ?samsignalep114 ; faldo:reference ?thisSequence . BIND(?this AS ?sam42) . } BIND(URI(CONCAT(STR(?this), '#MF_00594a48')) AS ?keyword48) . } "xsd:string
http://purl.uniprot.org/unirules/MF_00594http://www.w3.org/ns/shacl#rulehttp://purl.uniprot.org/unirules/MF_00594#construct
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