| http://purl.uniprot.org/unirules/MF_00607#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:235200 up:source unirule:MF_00607 .
_:235201 up:source unirule:MF_00607 .
_:235202 up:source unirule:MF_00607 .
_:235203 up:source unirule:MF_00607 .
_:235204 up:source unirule:MF_00607 .
_:235205 up:source unirule:MF_00607 .
_:235206 up:source unirule:MF_00607 .
_:235207 up:source unirule:MF_00607 .
_:235208 up:source unirule:MF_00607 .
_:235209 up:source unirule:MF_00607 .
_:235210 up:source unirule:MF_00607 .
_:235211 up:source unirule:MF_00607 .
_:235212 up:source unirule:MF_00607 .
_:235213 up:source unirule:MF_00607 .
_:235214 up:source unirule:MF_00607 .
_:235215 up:source unirule:MF_00607 .
_:235216 up:source unirule:MF_00607 .
_:235217 up:source unirule:MF_00607 .
_:235218 up:source unirule:MF_00607 .
_:235219 up:source unirule:MF_00607 .
_:235220 up:source unirule:MF_00607 .
_:235221 up:source unirule:MF_00607 .
_:235222 up:source unirule:MF_00607 .
_:235223 up:source unirule:MF_00607 .
_:235224 up:source unirule:MF_00607 .
_:235225 up:source unirule:MF_00607 .
_:235226 up:source unirule:MF_00607 .
?this up:annotation ?annotation1 ,
?annotation3 ;
up:classifiedWith GO:0000154 ,
GO:0005737 ,
GO:0016433 ,
keyword:489 ,
keyword:694 ,
keyword:698 ,
keyword:808 ,
keyword:949 ,
keyword:963 .
?gene0 skos:altLabel 'ksgA' ;
skos:prefLabel 'rsmA' .
?annotation1 a up:Subcellular_Location_Annotation .
?annotation1li2 up:cellularComponent .
?annotation3 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.' .
?case4 up:alternativeName ?name6 ,
?name7 ,
?name8 ;
up:recommendedName ?name5 .
?name5 up:ecName '2.1.1.-' ;
up:fullName 'Probable ribosomal RNA small subunit methyltransferase A' ;
rdf:type up:Structured_Name .
?name6 up:fullName '16S rRNA dimethyladenosine transferase' ;
rdf:type up:Structured_Name .
?name7 up:fullName '16S rRNA dimethylase' ;
rdf:type up:Structured_Name .
?name8 up:fullName "S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase" ;
rdf:type up:Structured_Name .
?case9 up:alternativeName ?name11 ,
?name12 ,
?name13 ,
?name14 ;
up:recommendedName ?name10 .
?name10 up:ecName '2.1.1.182' ;
up:fullName 'Ribosomal RNA small subunit methyltransferase A' ;
rdf:type up:Structured_Name .
?name11 up:fullName '16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase' ;
rdf:type up:Structured_Name .
?name12 up:fullName '16S rRNA dimethyladenosine transferase' ;
rdf:type up:Structured_Name .
?name13 up:fullName '16S rRNA dimethylase' ;
rdf:type up:Structured_Name .
?name14 up:fullName "S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase" ;
rdf:type up:Structured_Name .
?pfs15 up:annotation ?annotation16 .
?annotation16 faldo:begin ?pfsb17 ;
faldo:end ?pfse18 ;
up:ligand ?ligand19 ;
rdf:type up:Binding_Site_Annotation .
?pfsb17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?ligand19 rdfs:subClassOf chebi:59789 .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:59789 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:59789 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:59789 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:59789 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:59789 .
_:235227 a rdf:Statement ;
up:attribution _:235200 ;
rdf:subject ?gene0 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene0 .
_:235228 a rdf:Statement ;
up:attribution _:235201 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:235229 a rdf:Statement ;
up:attribution _:235202 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:235230 a rdf:Statement ;
up:attribution _:235203 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:235231 a rdf:Statement ;
up:attribution _:235204 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:489 .
_:235232 a rdf:Statement ;
up:attribution _:235205 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:235233 a rdf:Statement ;
up:attribution _:235206 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:698 .
_:235234 a rdf:Statement ;
up:attribution _:235207 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:949 .
_:235235 a rdf:Statement ;
up:attribution _:235208 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:235236 a rdf:Statement ;
up:attribution _:235209 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0016433 .
_:235237 a rdf:Statement ;
up:attribution _:235210 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0000154 .
_:235238 a rdf:Statement ;
up:attribution _:235211 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:235239 a rdf:Statement ;
up:attribution _:235212 ;
rdf:subject ?case4 ;
rdf:predicate up:recommendedName ;
rdf:object ?name5 .
_:235240 a rdf:Statement ;
up:attribution _:235213 ;
rdf:subject ?case4 ;
rdf:predicate up:alternativeName ;
rdf:object ?name6 .
_:235241 a rdf:Statement ;
up:attribution _:235214 ;
rdf:subject ?case4 ;
rdf:predicate up:alternativeName ;
rdf:object ?name7 .
_:235242 a rdf:Statement ;
up:attribution _:235215 ;
rdf:subject ?case4 ;
rdf:predicate up:alternativeName ;
rdf:object ?name8 .
_:235243 a rdf:Statement ;
up:attribution _:235216 ;
rdf:subject ?case9 ;
rdf:predicate up:recommendedName ;
rdf:object ?name10 .
_:235244 a rdf:Statement ;
up:attribution _:235217 ;
rdf:subject ?case9 ;
rdf:predicate up:alternativeName ;
rdf:object ?name11 .
_:235245 a rdf:Statement ;
up:attribution _:235218 ;
rdf:subject ?case9 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:235246 a rdf:Statement ;
up:attribution _:235219 ;
rdf:subject ?case9 ;
rdf:predicate up:alternativeName ;
rdf:object ?name13 .
_:235247 a rdf:Statement ;
up:attribution _:235220 ;
rdf:subject ?case9 ;
rdf:predicate up:alternativeName ;
rdf:object ?name14 .
_:235248 a rdf:Statement ;
up:source unirule:MF_00607 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:235249 a rdf:Statement ;
up:attribution _:235221 ;
rdf:subject ?pfs15 ;
rdf:predicate up:annotation ;
rdf:object ?annotation16 .
_:235250 a rdf:Statement ;
up:source unirule:MF_00607 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:235251 a rdf:Statement ;
up:attribution _:235222 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:235252 a rdf:Statement ;
up:source unirule:MF_00607 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:235253 a rdf:Statement ;
up:attribution _:235223 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:235254 a rdf:Statement ;
up:source unirule:MF_00607 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:235255 a rdf:Statement ;
up:attribution _:235224 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:235256 a rdf:Statement ;
up:source unirule:MF_00607 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:235257 a rdf:Statement ;
up:attribution _:235225 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:235258 a rdf:Statement ;
up:source unirule:MF_00607 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:235259 a rdf:Statement ;
up:attribution _:235226 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00607
#Rule MF_00607 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon57 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00607 .
?thisOrganism rdfs:subClassOf+ ?supertaxon57 .
BIND(URI(CONCAT(STR(?this), '#MF_00607a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00607a3')) AS ?annotation3) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch62 faldo:location ?templateMotifSequenceMatchRegionP0699263 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0699265 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06992MF_0060758 .
?templateMotifSequenceMatchRegionP0699263 faldo:begin ?templateMotifSequenceMatchBeginP0699264 .
?templateMotifSequenceMatchBeginP0699264 faldo:position ?templateMotifSequenceMatchBeginPositionP0699259 ;
faldo:reference isoform:P06992-1 .
?templateMotifSequenceProfileAlignmentOperationP0699265 edam:has_input signature:MF_00607 ;
rdf:type edam:operation_0300 .
?targetMotifMatch66 faldo:location ?targetMotifMatchRegionMatch67 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0060769 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06992MF_0060760 .
?targetMotifMatchRegionMatch67 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0060768 .
?targetMotifMatchRegionMatchBeginMF_0060768 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0060761 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0060769 edam:has_input signature:MF_00607 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06992MF_0060758, 1, (STRLEN(?templateMotifCigarP06992MF_0060758) - STRLEN(REPLACE(?templateMotifCigarP06992MF_0060758, CONCAT('^(?:-*[^-]){', STR(((18 - ?templateMotifSequenceMatchBeginPositionP0699259) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06992MF_0060760, 1, (STRLEN(?targetMotifMatchCigarP06992MF_0060760) - STRLEN(REPLACE(?targetMotifMatchCigarP06992MF_0060760, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06992MF_0060760, 1, (STRLEN(?targetMotifMatchCigarP06992MF_0060760) - STRLEN(REPLACE(?targetMotifMatchCigarP06992MF_0060760, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0060761) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb17) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse18) .
FILTER (REGEX('[NH]', SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00607a16')) AS ?annotation16) .
BIND(?this AS ?pfs15) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionP0699278 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0699280 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06992MF_0060773 .
?templateMotifSequenceMatchRegionP0699278 faldo:begin ?templateMotifSequenceMatchBeginP0699279 .
?templateMotifSequenceMatchBeginP0699279 faldo:position ?templateMotifSequenceMatchBeginPositionP0699274 ;
faldo:reference isoform:P06992-1 .
?templateMotifSequenceProfileAlignmentOperationP0699280 edam:has_input signature:MF_00607 ;
rdf:type edam:operation_0300 .
?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0060784 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06992MF_0060775 .
?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0060783 .
?targetMotifMatchRegionMatchBeginMF_0060783 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0060776 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0060784 edam:has_input signature:MF_00607 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06992MF_0060773, 1, (STRLEN(?templateMotifCigarP06992MF_0060773) - STRLEN(REPLACE(?templateMotifCigarP06992MF_0060773, CONCAT('^(?:-*[^-]){', STR(((20 - ?templateMotifSequenceMatchBeginPositionP0699274) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06992MF_0060775, 1, (STRLEN(?targetMotifMatchCigarP06992MF_0060775) - STRLEN(REPLACE(?targetMotifMatchCigarP06992MF_0060775, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06992MF_0060775, 1, (STRLEN(?targetMotifMatchCigarP06992MF_0060775) - STRLEN(REPLACE(?targetMotifMatchCigarP06992MF_0060775, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0060776) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER (REGEX('[ILVM]', SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00607a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionP0699293 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP0699295 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06992MF_0060788 .
?templateMotifSequenceMatchRegionP0699293 faldo:begin ?templateMotifSequenceMatchBeginP0699294 .
?templateMotifSequenceMatchBeginP0699294 faldo:position ?templateMotifSequenceMatchBeginPositionP0699289 ;
faldo:reference isoform:P06992-1 .
?templateMotifSequenceProfileAlignmentOperationP0699295 edam:has_input signature:MF_00607 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0060799 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06992MF_0060790 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0060798 .
?targetMotifMatchRegionMatchBeginMF_0060798 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0060791 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0060799 edam:has_input signature:MF_00607 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06992MF_0060788, 1, (STRLEN(?templateMotifCigarP06992MF_0060788) - STRLEN(REPLACE(?templateMotifCigarP06992MF_0060788, CONCAT('^(?:-*[^-]){', STR(((45 - ?templateMotifSequenceMatchBeginPositionP0699289) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06992MF_0060790, 1, (STRLEN(?targetMotifMatchCigarP06992MF_0060790) - STRLEN(REPLACE(?targetMotifMatchCigarP06992MF_0060790, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06992MF_0060790, 1, (STRLEN(?targetMotifMatchCigarP06992MF_0060790) - STRLEN(REPLACE(?targetMotifMatchCigarP06992MF_0060790, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0060791) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'G')) .
BIND(URI(CONCAT(STR(?this), '#MF_00607a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionP06992108 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06992110 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06992MF_00607103 .
?templateMotifSequenceMatchRegionP06992108 faldo:begin ?templateMotifSequenceMatchBeginP06992109 .
?templateMotifSequenceMatchBeginP06992109 faldo:position ?templateMotifSequenceMatchBeginPositionP06992104 ;
faldo:reference isoform:P06992-1 .
?templateMotifSequenceProfileAlignmentOperationP06992110 edam:has_input signature:MF_00607 ;
rdf:type edam:operation_0300 .
?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00607114 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06992MF_00607105 .
?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00607113 .
?targetMotifMatchRegionMatchBeginMF_00607113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00607106 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00607114 edam:has_input signature:MF_00607 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06992MF_00607103, 1, (STRLEN(?templateMotifCigarP06992MF_00607103) - STRLEN(REPLACE(?templateMotifCigarP06992MF_00607103, CONCAT('^(?:-*[^-]){', STR(((66 - ?templateMotifSequenceMatchBeginPositionP06992104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06992MF_00607105, 1, (STRLEN(?targetMotifMatchCigarP06992MF_00607105) - STRLEN(REPLACE(?targetMotifMatchCigarP06992MF_00607105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06992MF_00607105, 1, (STRLEN(?targetMotifMatchCigarP06992MF_00607105) - STRLEN(REPLACE(?targetMotifMatchCigarP06992MF_00607105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_00607106) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs1t117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'E')) .
BIND(URI(CONCAT(STR(?this), '#MF_00607a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionP06992123 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06992125 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06992MF_00607118 .
?templateMotifSequenceMatchRegionP06992123 faldo:begin ?templateMotifSequenceMatchBeginP06992124 .
?templateMotifSequenceMatchBeginP06992124 faldo:position ?templateMotifSequenceMatchBeginPositionP06992119 ;
faldo:reference isoform:P06992-1 .
?templateMotifSequenceProfileAlignmentOperationP06992125 edam:has_input signature:MF_00607 ;
rdf:type edam:operation_0300 .
?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00607129 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06992MF_00607120 .
?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00607128 .
?targetMotifMatchRegionMatchBeginMF_00607128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00607121 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00607129 edam:has_input signature:MF_00607 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06992MF_00607118, 1, (STRLEN(?templateMotifCigarP06992MF_00607118) - STRLEN(REPLACE(?templateMotifCigarP06992MF_00607118, CONCAT('^(?:-*[^-]){', STR(((91 - ?templateMotifSequenceMatchBeginPositionP06992119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06992MF_00607120, 1, (STRLEN(?targetMotifMatchCigarP06992MF_00607120) - STRLEN(REPLACE(?targetMotifMatchCigarP06992MF_00607120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06992MF_00607120, 1, (STRLEN(?targetMotifMatchCigarP06992MF_00607120) - STRLEN(REPLACE(?targetMotifMatchCigarP06992MF_00607120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_00607121) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs1t132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'D')) .
BIND(URI(CONCAT(STR(?this), '#MF_00607a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch137 faldo:location ?templateMotifSequenceMatchRegionP06992138 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP06992140 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP06992MF_00607133 .
?templateMotifSequenceMatchRegionP06992138 faldo:begin ?templateMotifSequenceMatchBeginP06992139 .
?templateMotifSequenceMatchBeginP06992139 faldo:position ?templateMotifSequenceMatchBeginPositionP06992134 ;
faldo:reference isoform:P06992-1 .
?templateMotifSequenceProfileAlignmentOperationP06992140 edam:has_input signature:MF_00607 ;
rdf:type edam:operation_0300 .
?targetMotifMatch141 faldo:location ?targetMotifMatchRegionMatch142 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00607144 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP06992MF_00607135 .
?targetMotifMatchRegionMatch142 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00607143 .
?targetMotifMatchRegionMatchBeginMF_00607143 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00607136 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00607144 edam:has_input signature:MF_00607 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP06992MF_00607133, 1, (STRLEN(?templateMotifCigarP06992MF_00607133) - STRLEN(REPLACE(?templateMotifCigarP06992MF_00607133, CONCAT('^(?:-*[^-]){', STR(((113 - ?templateMotifSequenceMatchBeginPositionP06992134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP06992MF_00607135, 1, (STRLEN(?targetMotifMatchCigarP06992MF_00607135) - STRLEN(REPLACE(?targetMotifMatchCigarP06992MF_00607135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP06992MF_00607135, 1, (STRLEN(?targetMotifMatchCigarP06992MF_00607135) - STRLEN(REPLACE(?targetMotifMatchCigarP06992MF_00607135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) .
BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_00607136) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs1t147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00607a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(?this AS ?case4) .
BIND(URI(CONCAT(STR(?this), '#MF_00607a5')) AS ?name5) .
BIND(URI(CONCAT(STR(?this), '#MF_00607a6')) AS ?name6) .
BIND(URI(CONCAT(STR(?this), '#MF_00607a7')) AS ?name7) .
BIND(URI(CONCAT(STR(?this), '#MF_00607a8')) AS ?name8) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(?this AS ?case9) .
BIND(URI(CONCAT(STR(?this), '#MF_00607a10')) AS ?name10) .
BIND(URI(CONCAT(STR(?this), '#MF_00607a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_00607a12')) AS ?name12) .
BIND(URI(CONCAT(STR(?this), '#MF_00607a13')) AS ?name13) .
BIND(URI(CONCAT(STR(?this), '#MF_00607a14')) AS ?name14) .
}
}
"xsd:string |
