| http://purl.uniprot.org/unirules/MF_00648#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:248114 up:source unirule:MF_00648 .
_:248115 up:source unirule:MF_00648 .
_:248116 up:source unirule:MF_00648 .
_:248117 up:source unirule:MF_00648 .
_:248118 up:source unirule:MF_00648 .
_:248119 up:source unirule:MF_00648 .
_:248120 up:source unirule:MF_00648 .
_:248121 up:source unirule:MF_00648 .
_:248122 up:source unirule:MF_00648 .
_:248123 up:source unirule:MF_00648 .
_:248124 up:source unirule:MF_00648 .
_:248125 up:source unirule:MF_00648 .
_:248126 up:source unirule:MF_00648 .
_:248127 up:source unirule:MF_00648 .
_:248128 up:source unirule:MF_00648 .
_:248129 up:source unirule:MF_00648 .
_:248130 up:source unirule:MF_00648 .
_:248131 up:source unirule:MF_00648 .
_:248132 up:source unirule:MF_00648 .
_:248133 up:source unirule:MF_00648 .
_:248134 up:source unirule:MF_00648 .
_:248135 up:source unirule:MF_00648 .
_:248136 up:source unirule:MF_00648 .
_:248137 up:source unirule:MF_00648 .
_:248138 up:source unirule:MF_00648 .
?this up:annotation ?annotation0 ,
?annotation1 ,
?annotation3 ,
?annotation5 ,
?annotation6 ,
?annotation7 ;
up:classifiedWith GO:0017111 ,
keyword:378 ,
keyword:460 ,
keyword:464 ,
keyword:479 ,
keyword:546 ,
keyword:547 .
?annotation0 a up:Function_Annotation ;
rdfs:comment 'Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA/RNA precursor pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions.' .
?annotation1 up:activity ?activity2 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity2 up:catalyticActivity ;
up:enzymeClass .
?annotation3 up:activity ?activity4 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity4 up:catalyticActivity ;
up:enzymeClass .
?annotation5 up:cofactor chebi:18420 ,
chebi:29035 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 1 divalent metal cation per subunit; can use either Mg(2+) or Mn(2+).' .
?annotation6 a up:Subunit_Annotation ;
rdfs:comment 'Homodimer.' .
?annotation7 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the YjjX NTPase family.' .
?case8 up:alternativeName ?name10 ,
?name11 ,
?name12 ;
up:recommendedName ?name9 .
?name9 up:ecName '3.6.1.73' ;
up:fullName 'Inosine/xanthosine triphosphatase' ;
up:shortName 'ITPase/XTPase' ;
rdf:type up:Structured_Name .
?name10 up:fullName 'Non-canonical purine NTP phosphatase' ;
rdf:type up:Structured_Name .
?name11 up:fullName 'Non-standard purine NTP phosphatase' ;
rdf:type up:Structured_Name .
?name12 up:fullName 'Nucleoside-triphosphate phosphatase' ;
up:shortName 'NTPase' ;
rdf:type up:Structured_Name .
?case13 up:alternativeName ?name15 ,
?name16 ,
?name17 ;
up:recommendedName ?name14 .
?name14 up:ecName '3.6.1.73' ;
up:fullName 'Probable inosine/xanthosine triphosphatase' ;
up:shortName 'ITPase/XTPase' ;
rdf:type up:Structured_Name .
?name15 up:fullName 'Non-canonical purine NTP phosphatase' ;
rdf:type up:Structured_Name .
?name16 up:fullName 'Non-standard purine NTP phosphatase' ;
rdf:type up:Structured_Name .
?name17 up:fullName 'Nucleoside-triphosphate phosphatase' ;
up:shortName 'NTPase' ;
rdf:type up:Structured_Name .
?pfs18 up:annotation ?annotation19 .
?annotation19 faldo:begin ?pfsb20 ;
faldo:end ?pfse21 ;
up:ligand ?ligand22 ;
rdf:type up:Binding_Site_Annotation .
?pfsb20 faldo:position ?thisPositionOn24 ;
rdf:type faldo:ExactPosition .
?pfse21 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?ligand22 rdfs:subClassOf ?molecule23 .
?molecule23 rdfs:label 'substrate' .
?pfs26 up:annotation ?annotation27 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf ?molecule31 .
?molecule31 rdfs:label 'substrate' .
?pfs34 up:annotation ?annotation35 .
?annotation35 faldo:begin ?pfsb36 ;
faldo:end ?pfse37 ;
up:ligand ?ligand38 ;
rdf:type up:Binding_Site_Annotation .
?pfsb36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?pfse37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?ligand38 rdfs:subClassOf chebi:18420 .
?pfs41 up:annotation ?annotation42 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:18420 .
_:248139 a rdf:Statement ;
up:attribution _:248114 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation0 .
_:248140 a rdf:Statement ;
up:attribution _:248115 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation1 .
_:248141 a rdf:Statement ;
up:attribution _:248116 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:248142 a rdf:Statement ;
up:attribution _:248117 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation5 .
_:248143 a rdf:Statement ;
up:attribution _:248118 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:248144 a rdf:Statement ;
up:attribution _:248119 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:248145 a rdf:Statement ;
up:attribution _:248120 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:248146 a rdf:Statement ;
up:attribution _:248121 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:460 .
_:248147 a rdf:Statement ;
up:attribution _:248122 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:248148 a rdf:Statement ;
up:attribution _:248123 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:248149 a rdf:Statement ;
up:attribution _:248124 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:546 .
_:248150 a rdf:Statement ;
up:attribution _:248125 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:547 .
_:248151 a rdf:Statement ;
up:attribution _:248126 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0017111 .
_:248152 a rdf:Statement ;
up:attribution _:248127 ;
rdf:subject ?case8 ;
rdf:predicate up:recommendedName ;
rdf:object ?name9 .
_:248153 a rdf:Statement ;
up:attribution _:248128 ;
rdf:subject ?case8 ;
rdf:predicate up:alternativeName ;
rdf:object ?name10 .
_:248154 a rdf:Statement ;
up:attribution _:248129 ;
rdf:subject ?case8 ;
rdf:predicate up:alternativeName ;
rdf:object ?name11 .
_:248155 a rdf:Statement ;
up:attribution _:248130 ;
rdf:subject ?case8 ;
rdf:predicate up:alternativeName ;
rdf:object ?name12 .
_:248156 a rdf:Statement ;
up:attribution _:248131 ;
rdf:subject ?case13 ;
rdf:predicate up:recommendedName ;
rdf:object ?name14 .
_:248157 a rdf:Statement ;
up:attribution _:248132 ;
rdf:subject ?case13 ;
rdf:predicate up:alternativeName ;
rdf:object ?name15 .
_:248158 a rdf:Statement ;
up:attribution _:248133 ;
rdf:subject ?case13 ;
rdf:predicate up:alternativeName ;
rdf:object ?name16 .
_:248159 a rdf:Statement ;
up:attribution _:248134 ;
rdf:subject ?case13 ;
rdf:predicate up:alternativeName ;
rdf:object ?name17 .
_:248160 a rdf:Statement ;
up:source unirule:MF_00648 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:248161 a rdf:Statement ;
up:attribution _:248135 ;
rdf:subject ?pfs18 ;
rdf:predicate up:annotation ;
rdf:object ?annotation19 .
_:248162 a rdf:Statement ;
up:source unirule:MF_00648 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:248163 a rdf:Statement ;
up:attribution _:248136 ;
rdf:subject ?pfs26 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:248164 a rdf:Statement ;
up:source unirule:MF_00648 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:248165 a rdf:Statement ;
up:attribution _:248137 ;
rdf:subject ?pfs34 ;
rdf:predicate up:annotation ;
rdf:object ?annotation35 .
_:248166 a rdf:Statement ;
up:source unirule:MF_00648 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:248167 a rdf:Statement ;
up:attribution _:248138 ;
rdf:subject ?pfs41 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00648
#Rule MF_00648 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon48 {taxon:2 taxon:2157}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00648 .
?thisOrganism rdfs:subClassOf+ ?supertaxon48 .
BIND(URI(CONCAT(STR(?this), '#MF_00648a0')) AS ?annotation0) .
BIND(URI(CONCAT(STR(?this), '#MF_00648a1')) AS ?annotation1) .
BIND(URI(CONCAT(STR(?this), '#MF_00648a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00648a5')) AS ?annotation5) .
BIND(URI(CONCAT(STR(?this), '#MF_00648a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00648a7')) AS ?annotation7) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch53 faldo:location ?templateMotifSequenceMatchRegionP3941154 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3941156 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39411MF_0064849 .
?templateMotifSequenceMatchRegionP3941154 faldo:begin ?templateMotifSequenceMatchBeginP3941155 .
?templateMotifSequenceMatchBeginP3941155 faldo:position ?templateMotifSequenceMatchBeginPositionP3941150 ;
faldo:reference isoform:P39411-1 .
?templateMotifSequenceProfileAlignmentOperationP3941156 edam:has_input signature:MF_00648 ;
rdf:type edam:operation_0300 .
?targetMotifMatch57 faldo:location ?targetMotifMatchRegionMatch58 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0064860 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39411MF_0064851 .
?targetMotifMatchRegionMatch58 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0064859 .
?targetMotifMatchRegionMatchBeginMF_0064859 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0064852 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0064860 edam:has_input signature:MF_00648 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39411MF_0064849, 1, (STRLEN(?templateMotifCigarP39411MF_0064849) - STRLEN(REPLACE(?templateMotifCigarP39411MF_0064849, CONCAT('^(?:-*[^-]){', STR(((8 - ?templateMotifSequenceMatchBeginPositionP3941150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step161) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39411MF_0064851, 1, (STRLEN(?targetMotifMatchCigarP39411MF_0064851) - STRLEN(REPLACE(?targetMotifMatchCigarP39411MF_0064851, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39411MF_0064851, 1, (STRLEN(?targetMotifMatchCigarP39411MF_0064851) - STRLEN(REPLACE(?targetMotifMatchCigarP39411MF_0064851, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step161), '}'), '')))), '[^-]', ''))) AS ?step262) .
BIND(((?step262 + ?targetMotifMatchRegionMatchBeginPositionMF_0064852) - 1) AS ?thisPositionOn24) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39411MF_0064849, 1, (STRLEN(?templateMotifCigarP39411MF_0064849) - STRLEN(REPLACE(?templateMotifCigarP39411MF_0064849, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionP3941150) + 1)), '}'), '')))), '[a-z]', '')) AS ?step163) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39411MF_0064851, 1, (STRLEN(?targetMotifMatchCigarP39411MF_0064851) - STRLEN(REPLACE(?targetMotifMatchCigarP39411MF_0064851, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39411MF_0064851, 1, (STRLEN(?targetMotifMatchCigarP39411MF_0064851) - STRLEN(REPLACE(?targetMotifMatchCigarP39411MF_0064851, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step163), '}'), '')))), '[^-]', ''))) AS ?step264) .
BIND(((?step264 + ?targetMotifMatchRegionMatchBeginPositionMF_0064852) - 1) AS ?thisPositionOn25) .
BIND(?this AS ?pfs1t65) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn24))) AS ?pfsb20) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfse21) .
FILTER (REGEX('[TS][TS][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][ARNDCQEGHILKMFPSTWYVBZJUOX][K]', SUBSTR(?thisSequenceValue, ?thisPositionOn24, (?thisPositionOn25 - ?thisPositionOn24)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00648a19')) AS ?annotation19) .
BIND(?this AS ?pfs18) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch70 faldo:location ?templateMotifSequenceMatchRegionP3941171 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3941173 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39411MF_0064866 .
?templateMotifSequenceMatchRegionP3941171 faldo:begin ?templateMotifSequenceMatchBeginP3941172 .
?templateMotifSequenceMatchBeginP3941172 faldo:position ?templateMotifSequenceMatchBeginPositionP3941167 ;
faldo:reference isoform:P39411-1 .
?templateMotifSequenceProfileAlignmentOperationP3941173 edam:has_input signature:MF_00648 ;
rdf:type edam:operation_0300 .
?targetMotifMatch74 faldo:location ?targetMotifMatchRegionMatch75 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0064877 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39411MF_0064868 .
?targetMotifMatchRegionMatch75 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0064876 .
?targetMotifMatchRegionMatchBeginMF_0064876 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0064869 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0064877 edam:has_input signature:MF_00648 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39411MF_0064866, 1, (STRLEN(?templateMotifCigarP39411MF_0064866) - STRLEN(REPLACE(?templateMotifCigarP39411MF_0064866, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP3941167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39411MF_0064868, 1, (STRLEN(?targetMotifMatchCigarP39411MF_0064868) - STRLEN(REPLACE(?targetMotifMatchCigarP39411MF_0064868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39411MF_0064868, 1, (STRLEN(?targetMotifMatchCigarP39411MF_0064868) - STRLEN(REPLACE(?targetMotifMatchCigarP39411MF_0064868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0064869) - 1) AS ?thisPositionOn32) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39411MF_0064866, 1, (STRLEN(?templateMotifCigarP39411MF_0064866) - STRLEN(REPLACE(?templateMotifCigarP39411MF_0064866, CONCAT('^(?:-*[^-]){', STR(((69 - ?templateMotifSequenceMatchBeginPositionP3941167) + 1)), '}'), '')))), '[a-z]', '')) AS ?step180) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39411MF_0064868, 1, (STRLEN(?targetMotifMatchCigarP39411MF_0064868) - STRLEN(REPLACE(?targetMotifMatchCigarP39411MF_0064868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39411MF_0064868, 1, (STRLEN(?targetMotifMatchCigarP39411MF_0064868) - STRLEN(REPLACE(?targetMotifMatchCigarP39411MF_0064868, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step180), '}'), '')))), '[^-]', ''))) AS ?step281) .
BIND(((?step281 + ?targetMotifMatchRegionMatchBeginPositionMF_0064869) - 1) AS ?thisPositionOn33) .
BIND(?this AS ?pfs1t82) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfse29) .
FILTER (REGEX('[ED][AGV]', SUBSTR(?thisSequenceValue, ?thisPositionOn32, (?thisPositionOn33 - ?thisPositionOn32)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00648a27')) AS ?annotation27) .
BIND(?this AS ?pfs26) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch87 faldo:location ?templateMotifSequenceMatchRegionP3941188 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP3941190 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39411MF_0064883 .
?templateMotifSequenceMatchRegionP3941188 faldo:begin ?templateMotifSequenceMatchBeginP3941189 .
?templateMotifSequenceMatchBeginP3941189 faldo:position ?templateMotifSequenceMatchBeginPositionP3941184 ;
faldo:reference isoform:P39411-1 .
?templateMotifSequenceProfileAlignmentOperationP3941190 edam:has_input signature:MF_00648 ;
rdf:type edam:operation_0300 .
?targetMotifMatch91 faldo:location ?targetMotifMatchRegionMatch92 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0064894 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39411MF_0064885 .
?targetMotifMatchRegionMatch92 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0064893 .
?targetMotifMatchRegionMatchBeginMF_0064893 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0064886 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0064894 edam:has_input signature:MF_00648 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39411MF_0064883, 1, (STRLEN(?templateMotifCigarP39411MF_0064883) - STRLEN(REPLACE(?templateMotifCigarP39411MF_0064883, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionP3941184) + 1)), '}'), '')))), '[a-z]', '')) AS ?step195) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39411MF_0064885, 1, (STRLEN(?targetMotifMatchCigarP39411MF_0064885) - STRLEN(REPLACE(?targetMotifMatchCigarP39411MF_0064885, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39411MF_0064885, 1, (STRLEN(?targetMotifMatchCigarP39411MF_0064885) - STRLEN(REPLACE(?targetMotifMatchCigarP39411MF_0064885, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step195), '}'), '')))), '[^-]', ''))) AS ?step296) .
BIND(((?step296 + ?targetMotifMatchRegionMatchBeginPositionMF_0064886) - 1) AS ?thisPositionOn39) .
BIND(?thisPositionOn39 AS ?thisPositionOn40) .
BIND(?this AS ?pfs1t97) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfsb36) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfse37) .
FILTER (REGEX('[ED]', SUBSTR(?thisSequenceValue, ?thisPositionOn39, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00648a35')) AS ?annotation35) .
BIND(?this AS ?pfs34) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch102 faldo:location ?templateMotifSequenceMatchRegionP39411103 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP39411105 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP39411MF_0064898 .
?templateMotifSequenceMatchRegionP39411103 faldo:begin ?templateMotifSequenceMatchBeginP39411104 .
?templateMotifSequenceMatchBeginP39411104 faldo:position ?templateMotifSequenceMatchBeginPositionP3941199 ;
faldo:reference isoform:P39411-1 .
?templateMotifSequenceProfileAlignmentOperationP39411105 edam:has_input signature:MF_00648 ;
rdf:type edam:operation_0300 .
?targetMotifMatch106 faldo:location ?targetMotifMatchRegionMatch107 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00648109 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP39411MF_00648100 .
?targetMotifMatchRegionMatch107 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00648108 .
?targetMotifMatchRegionMatchBeginMF_00648108 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00648101 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00648109 edam:has_input signature:MF_00648 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP39411MF_0064898, 1, (STRLEN(?templateMotifCigarP39411MF_0064898) - STRLEN(REPLACE(?templateMotifCigarP39411MF_0064898, CONCAT('^(?:-*[^-]){', STR(((68 - ?templateMotifSequenceMatchBeginPositionP3941199) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1110) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP39411MF_00648100, 1, (STRLEN(?targetMotifMatchCigarP39411MF_00648100) - STRLEN(REPLACE(?targetMotifMatchCigarP39411MF_00648100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP39411MF_00648100, 1, (STRLEN(?targetMotifMatchCigarP39411MF_00648100) - STRLEN(REPLACE(?targetMotifMatchCigarP39411MF_00648100, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1110), '}'), '')))), '[^-]', ''))) AS ?step2111) .
BIND(((?step2111 + ?targetMotifMatchRegionMatchBeginPositionMF_00648101) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t112) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER (REGEX('[EQD]', SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1))) .
BIND(URI(CONCAT(STR(?this), '#MF_00648a42')) AS ?annotation42) .
BIND(?this AS ?pfs41) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism rdfs:subClassOf+ taxon:1224 .
BIND(?this AS ?case8) .
BIND(URI(CONCAT(STR(?this), '#MF_00648a9')) AS ?name9) .
BIND(URI(CONCAT(STR(?this), '#MF_00648a10')) AS ?name10) .
BIND(URI(CONCAT(STR(?this), '#MF_00648a11')) AS ?name11) .
BIND(URI(CONCAT(STR(?this), '#MF_00648a12')) AS ?name12) .
}
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
FILTER (! (EXISTS {
?thisOrganism rdfs:subClassOf+ taxon:1224 .
})) .
BIND(?this AS ?case13) .
BIND(URI(CONCAT(STR(?this), '#MF_00648a14')) AS ?name14) .
BIND(URI(CONCAT(STR(?this), '#MF_00648a15')) AS ?name15) .
BIND(URI(CONCAT(STR(?this), '#MF_00648a16')) AS ?name16) .
BIND(URI(CONCAT(STR(?this), '#MF_00648a17')) AS ?name17) .
}
}
"xsd:string |
