| http://purl.uniprot.org/unirules/MF_00737#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:270316 up:source unirule:MF_00737 .
_:270317 up:source unirule:MF_00737 .
_:270318 up:source unirule:MF_00737 .
_:270319 up:source unirule:MF_00737 .
_:270320 up:source unirule:MF_00737 .
_:270321 up:source unirule:MF_00737 .
_:270322 up:source unirule:MF_00737 .
_:270323 up:source unirule:MF_00737 .
_:270324 up:source unirule:MF_00737 .
_:270325 up:source unirule:MF_00737 .
_:270326 up:source unirule:MF_00737 .
_:270327 up:source unirule:MF_00737 .
_:270328 up:source unirule:MF_00737 .
_:270329 up:source unirule:MF_00737 .
_:270330 up:source unirule:MF_00737 .
_:270331 up:source unirule:MF_00737 .
_:270332 up:source unirule:MF_00737 .
_:270333 up:source unirule:MF_00737 .
_:270334 up:source unirule:MF_00737 .
_:270335 up:source unirule:MF_00737 .
_:270336 up:source unirule:MF_00737 .
_:270337 up:source unirule:MF_00737 .
_:270338 up:source unirule:MF_00737 .
?this up:alternativeName ?name1 ,
?name2 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation7 ,
?annotation8 ;
up:classifiedWith GO:0006548 ,
GO:0030145 ,
GO:0050415 ,
keyword:369 ,
keyword:378 ;
up:recommendedName ?name0 .
?name0 up:ecName '3.5.3.8' ;
up:fullName 'Formimidoylglutamase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Formiminoglutamase' ;
rdf:type up:Structured_Name .
?name2 up:fullName 'Formiminoglutamate hydrolase' ;
rdf:type up:Structured_Name .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyzes the conversion of N-formimidoyl-L-glutamate to L-glutamate and formamide.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:cofactor chebi:29035 ;
rdf:type up:Cofactor_Annotation ;
rdfs:comment 'Binds 2 manganese ions per subunit.' .
?annotation7 a up:Pathway_Annotation ;
rdfs:comment 'Amino-acid degradation; L-histidine degradation into L-glutamate; L-glutamate from N-formimidoyl-L-glutamate (hydrolase route): step 1/1.' .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the arginase family.' .
?case9 up:classifiedWith keyword:464 ,
keyword:479 .
?pfs11 up:annotation ?annotation12 ,
?annotation18 ,
?annotation24 ,
?annotation30 ,
?annotation36 ,
?annotation42 ,
?annotation48 ,
?annotation54 .
?annotation12 faldo:begin ?pfsb13 ;
faldo:end ?pfse14 ;
up:ligand ?ligand15 ;
rdf:type up:Binding_Site_Annotation .
?pfsb13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?pfse14 faldo:position ?thisPositionOn17 ;
rdf:type faldo:ExactPosition .
?ligand15 rdfs:subClassOf chebi:29035 .
?annotation18 faldo:begin ?pfsb19 ;
faldo:end ?pfse20 ;
up:ligand ?ligand21 ;
rdf:type up:Binding_Site_Annotation .
?pfsb19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?pfse20 faldo:position ?thisPositionOn23 ;
rdf:type faldo:ExactPosition .
?ligand21 rdfs:subClassOf chebi:29035 .
?annotation24 faldo:begin ?pfsb25 ;
faldo:end ?pfse26 ;
up:ligand ?ligand27 ;
rdf:type up:Binding_Site_Annotation .
?pfsb25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?pfse26 faldo:position ?thisPositionOn29 ;
rdf:type faldo:ExactPosition .
?ligand27 rdfs:subClassOf chebi:29035 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:29035 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:29035 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:29035 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:29035 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:29035 .
_:270339 a rdf:Statement ;
up:attribution _:270316 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:270340 a rdf:Statement ;
up:attribution _:270317 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:270341 a rdf:Statement ;
up:attribution _:270318 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name2 .
_:270342 a rdf:Statement ;
up:attribution _:270319 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:270343 a rdf:Statement ;
up:attribution _:270320 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:270344 a rdf:Statement ;
up:attribution _:270321 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:270345 a rdf:Statement ;
up:attribution _:270322 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation7 .
_:270346 a rdf:Statement ;
up:attribution _:270323 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:270347 a rdf:Statement ;
up:attribution _:270324 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:378 .
_:270348 a rdf:Statement ;
up:attribution _:270325 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:369 .
_:270349 a rdf:Statement ;
up:attribution _:270326 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0050415 .
_:270350 a rdf:Statement ;
up:attribution _:270327 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030145 .
_:270351 a rdf:Statement ;
up:attribution _:270328 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006548 .
_:270352 a rdf:Statement ;
up:attribution _:270329 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:270353 a rdf:Statement ;
up:attribution _:270330 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:270354 a rdf:Statement ;
up:source unirule:MF_00737 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:270355 a rdf:Statement ;
up:attribution _:270331 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation12 .
_:270356 a rdf:Statement ;
up:source unirule:MF_00737 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:270357 a rdf:Statement ;
up:attribution _:270332 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation18 .
_:270358 a rdf:Statement ;
up:source unirule:MF_00737 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:270359 a rdf:Statement ;
up:attribution _:270333 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation24 .
_:270360 a rdf:Statement ;
up:source unirule:MF_00737 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:270361 a rdf:Statement ;
up:attribution _:270334 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:270362 a rdf:Statement ;
up:source unirule:MF_00737 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:270363 a rdf:Statement ;
up:attribution _:270335 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:270364 a rdf:Statement ;
up:source unirule:MF_00737 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:270365 a rdf:Statement ;
up:attribution _:270336 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:270366 a rdf:Statement ;
up:source unirule:MF_00737 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:270367 a rdf:Statement ;
up:attribution _:270337 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:270368 a rdf:Statement ;
up:source unirule:MF_00737 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:270369 a rdf:Statement ;
up:attribution _:270338 ;
rdf:subject ?pfs11 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00737
#Rule MF_00737 Created by:? on:2005-02-28 Modified by:Edouard de Castro on:2024-09-02
VALUES ?supertaxon60 {taxon:2 taxon:183963}
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00737 .
?thisOrganism rdfs:subClassOf+ ?supertaxon60 .
BIND(URI(CONCAT(STR(?this), '#MF_00737a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00737a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00737a2')) AS ?name2) .
BIND(URI(CONCAT(STR(?this), '#MF_00737a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00737a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00737a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00737a7')) AS ?annotation7) .
BIND(URI(CONCAT(STR(?this), '#MF_00737a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch65 faldo:location ?templateMotifSequenceMatchRegionP4206866 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationP4206868 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarP42068MF_0073761 .
?templateMotifSequenceMatchRegionP4206866 faldo:begin ?templateMotifSequenceMatchBeginP4206867 .
?templateMotifSequenceMatchBeginP4206867 faldo:position ?templateMotifSequenceMatchBeginPositionP4206862 ;
faldo:reference isoform:P42068-1 .
?templateMotifSequenceProfileAlignmentOperationP4206868 edam:has_input signature:MF_00737 ;
rdf:type edam:operation_0300 .
?targetMotifMatch69 faldo:location ?targetMotifMatchRegionMatch70 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0073772 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarP42068MF_0073763 .
?targetMotifMatchRegionMatch70 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0073771 .
?targetMotifMatchRegionMatchBeginMF_0073771 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0073764 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0073772 edam:has_input signature:MF_00737 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42068MF_0073761, 1, (STRLEN(?templateMotifCigarP42068MF_0073761) - STRLEN(REPLACE(?templateMotifCigarP42068MF_0073761, CONCAT('^(?:-*[^-]){', STR(((127 - ?templateMotifSequenceMatchBeginPositionP4206862) + 1)), '}'), '')))), '[a-z]', '')) AS ?step173) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42068MF_0073763, 1, (STRLEN(?targetMotifMatchCigarP42068MF_0073763) - STRLEN(REPLACE(?targetMotifMatchCigarP42068MF_0073763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42068MF_0073763, 1, (STRLEN(?targetMotifMatchCigarP42068MF_0073763) - STRLEN(REPLACE(?targetMotifMatchCigarP42068MF_0073763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step173), '}'), '')))), '[^-]', ''))) AS ?step274) .
BIND(((?step274 + ?targetMotifMatchRegionMatchBeginPositionMF_0073764) - 1) AS ?thisPositionOn16) .
BIND(?thisPositionOn16 AS ?thisPositionOn17) .
BIND(?this AS ?pfs1t75) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfsb13) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn17))) AS ?pfse14) .
FILTER (REGEX('[HN]', SUBSTR(?thisSequenceValue, ?thisPositionOn16, 1))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42068MF_0073761, 1, (STRLEN(?templateMotifCigarP42068MF_0073761) - STRLEN(REPLACE(?templateMotifCigarP42068MF_0073761, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP4206862) + 1)), '}'), '')))), '[a-z]', '')) AS ?step176) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42068MF_0073763, 1, (STRLEN(?targetMotifMatchCigarP42068MF_0073763) - STRLEN(REPLACE(?targetMotifMatchCigarP42068MF_0073763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42068MF_0073763, 1, (STRLEN(?targetMotifMatchCigarP42068MF_0073763) - STRLEN(REPLACE(?targetMotifMatchCigarP42068MF_0073763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step176), '}'), '')))), '[^-]', ''))) AS ?step277) .
BIND(((?step277 + ?targetMotifMatchRegionMatchBeginPositionMF_0073764) - 1) AS ?thisPositionOn22) .
BIND(?thisPositionOn22 AS ?thisPositionOn23) .
BIND(?this AS ?pfs1t78) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfsb19) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn23))) AS ?pfse20) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn22, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42068MF_0073761, 1, (STRLEN(?templateMotifCigarP42068MF_0073761) - STRLEN(REPLACE(?templateMotifCigarP42068MF_0073761, CONCAT('^(?:-*[^-]){', STR(((150 - ?templateMotifSequenceMatchBeginPositionP4206862) + 1)), '}'), '')))), '[a-z]', '')) AS ?step179) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42068MF_0073763, 1, (STRLEN(?targetMotifMatchCigarP42068MF_0073763) - STRLEN(REPLACE(?targetMotifMatchCigarP42068MF_0073763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42068MF_0073763, 1, (STRLEN(?targetMotifMatchCigarP42068MF_0073763) - STRLEN(REPLACE(?targetMotifMatchCigarP42068MF_0073763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step179), '}'), '')))), '[^-]', ''))) AS ?step280) .
BIND(((?step280 + ?targetMotifMatchRegionMatchBeginPositionMF_0073764) - 1) AS ?thisPositionOn28) .
BIND(?thisPositionOn28 AS ?thisPositionOn29) .
BIND(?this AS ?pfs1t81) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfsb25) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn29))) AS ?pfse26) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn28, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42068MF_0073761, 1, (STRLEN(?templateMotifCigarP42068MF_0073761) - STRLEN(REPLACE(?templateMotifCigarP42068MF_0073761, CONCAT('^(?:-*[^-]){', STR(((152 - ?templateMotifSequenceMatchBeginPositionP4206862) + 1)), '}'), '')))), '[a-z]', '')) AS ?step182) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42068MF_0073763, 1, (STRLEN(?targetMotifMatchCigarP42068MF_0073763) - STRLEN(REPLACE(?targetMotifMatchCigarP42068MF_0073763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42068MF_0073763, 1, (STRLEN(?targetMotifMatchCigarP42068MF_0073763) - STRLEN(REPLACE(?targetMotifMatchCigarP42068MF_0073763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step182), '}'), '')))), '[^-]', ''))) AS ?step283) .
BIND(((?step283 + ?targetMotifMatchRegionMatchBeginPositionMF_0073764) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs1t84) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42068MF_0073761, 1, (STRLEN(?templateMotifCigarP42068MF_0073761) - STRLEN(REPLACE(?templateMotifCigarP42068MF_0073761, CONCAT('^(?:-*[^-]){', STR(((154 - ?templateMotifSequenceMatchBeginPositionP4206862) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42068MF_0073763, 1, (STRLEN(?targetMotifMatchCigarP42068MF_0073763) - STRLEN(REPLACE(?targetMotifMatchCigarP42068MF_0073763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42068MF_0073763, 1, (STRLEN(?targetMotifMatchCigarP42068MF_0073763) - STRLEN(REPLACE(?targetMotifMatchCigarP42068MF_0073763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0073764) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42068MF_0073761, 1, (STRLEN(?templateMotifCigarP42068MF_0073761) - STRLEN(REPLACE(?templateMotifCigarP42068MF_0073761, CONCAT('^(?:-*[^-]){', STR(((242 - ?templateMotifSequenceMatchBeginPositionP4206862) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42068MF_0073763, 1, (STRLEN(?targetMotifMatchCigarP42068MF_0073763) - STRLEN(REPLACE(?targetMotifMatchCigarP42068MF_0073763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42068MF_0073763, 1, (STRLEN(?targetMotifMatchCigarP42068MF_0073763) - STRLEN(REPLACE(?targetMotifMatchCigarP42068MF_0073763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0073764) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs1t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER (REGEX('[DC]', SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42068MF_0073761, 1, (STRLEN(?templateMotifCigarP42068MF_0073761) - STRLEN(REPLACE(?templateMotifCigarP42068MF_0073761, CONCAT('^(?:-*[^-]){', STR(((242 - ?templateMotifSequenceMatchBeginPositionP4206862) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42068MF_0073763, 1, (STRLEN(?targetMotifMatchCigarP42068MF_0073763) - STRLEN(REPLACE(?targetMotifMatchCigarP42068MF_0073763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42068MF_0073763, 1, (STRLEN(?targetMotifMatchCigarP42068MF_0073763) - STRLEN(REPLACE(?targetMotifMatchCigarP42068MF_0073763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0073764) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs1t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER (REGEX('[DC]', SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarP42068MF_0073761, 1, (STRLEN(?templateMotifCigarP42068MF_0073761) - STRLEN(REPLACE(?templateMotifCigarP42068MF_0073761, CONCAT('^(?:-*[^-]){', STR(((244 - ?templateMotifSequenceMatchBeginPositionP4206862) + 1)), '}'), '')))), '[a-z]', '')) AS ?step194) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarP42068MF_0073763, 1, (STRLEN(?targetMotifMatchCigarP42068MF_0073763) - STRLEN(REPLACE(?targetMotifMatchCigarP42068MF_0073763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarP42068MF_0073763, 1, (STRLEN(?targetMotifMatchCigarP42068MF_0073763) - STRLEN(REPLACE(?targetMotifMatchCigarP42068MF_0073763, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step194), '}'), '')))), '[^-]', ''))) AS ?step295) .
BIND(((?step295 + ?targetMotifMatchRegionMatchBeginPositionMF_0073764) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs1t96) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'D')) .
BIND(?this AS ?pfs11) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag97) .
}
BIND(IF(BOUND(?tagFTGRP_1), ?caseWithTag97, ?UNBOUND_VARIABLE) AS ?case9) .
OPTIONAL {
?this a up:Protein .
?this up:organism ?thisOrganism .
?thisOrganism up:scientificName ?name98 .
FILTER (! (CONTAINS(?containsName99, ?name98))) .
BIND(?this AS ?case10) .
}
}
"xsd:string |
