| http://purl.uniprot.org/unirules/MF_00740#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:271026 up:source unirule:MF_00740 .
_:271027 up:source unirule:MF_00740 .
_:271028 up:source unirule:MF_00740 .
_:271029 up:source unirule:MF_00740 .
_:271030 up:source unirule:MF_00740 .
_:271031 up:source unirule:MF_00740 .
_:271032 up:source unirule:MF_00740 .
_:271033 up:source unirule:MF_00740 .
_:271034 up:source unirule:MF_00740 .
_:271035 up:source unirule:MF_00740 .
_:271036 up:source unirule:MF_00740 .
_:271037 up:source unirule:MF_00740 .
_:271038 up:source unirule:MF_00740 .
_:271039 up:source unirule:MF_00740 .
_:271040 up:source unirule:MF_00740 .
_:271041 up:source unirule:MF_00740 .
_:271042 up:source unirule:MF_00740 .
_:271043 up:source unirule:MF_00740 .
_:271044 up:source unirule:MF_00740 .
_:271045 up:source unirule:MF_00740 .
_:271046 up:source unirule:MF_00740 .
_:271047 up:source unirule:MF_00740 .
_:271048 up:source unirule:MF_00740 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ,
?annotation9 ,
?annotation11 ;
up:classifiedWith GO:0005737 ,
GO:0006018 ,
GO:0008973 ,
GO:0030145 ,
keyword:413 ,
keyword:464 ,
keyword:479 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:ecName '5.4.2.7' ;
up:fullName 'Phosphopentomutase' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Phosphodeoxyribomutase' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'deoB' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Isomerase that catalyzes the conversion of deoxy-ribose 1-phosphate (dRib-1-P) and ribose 1-phosphate (Rib-1-P) to deoxy-ribose 5-phosphate (dRib-5-P) and ribose 5-phosphate (Rib-5-P), respectively.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 up:activity ?activity7 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity7 up:catalyticActivity ;
up:enzymeClass .
?annotation8 a up:Pathway_Annotation ;
rdfs:comment 'Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate: step 1/2.' .
?annotation9 a up:Subcellular_Location_Annotation .
?annotation9li10 up:cellularComponent .
?annotation11 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the phosphopentomutase family.' .
?pfs14 up:annotation ?annotation15 ,
?annotation21 ,
?annotation27 .
?annotation15 faldo:begin ?pfsb16 ;
faldo:end ?pfse17 ;
up:ligand ?ligand18 ;
rdf:type up:Binding_Site_Annotation .
?pfsb16 faldo:position ?thisPositionOn19 ;
rdf:type faldo:ExactPosition .
?pfse17 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?ligand18 rdfs:subClassOf chebi:29035 .
?annotation21 faldo:begin ?pfsb22 ;
faldo:end ?pfse23 ;
up:ligand ?ligand24 ;
rdf:type up:Binding_Site_Annotation .
?pfsb22 faldo:position ?thisPositionOn25 ;
rdf:type faldo:ExactPosition .
?pfse23 faldo:position ?thisPositionOn26 ;
rdf:type faldo:ExactPosition .
?ligand24 rdfs:subClassOf chebi:29035 .
?annotation27 faldo:begin ?pfsb28 ;
faldo:end ?pfse29 ;
up:ligand ?ligand30 ;
rdf:type up:Binding_Site_Annotation .
?pfsb28 faldo:position ?thisPositionOn31 ;
rdf:type faldo:ExactPosition .
?pfse29 faldo:position ?thisPositionOn32 ;
rdf:type faldo:ExactPosition .
?ligand30 rdfs:subClassOf chebi:29035 .
?pfs33 up:annotation ?annotation34 ,
?annotation40 ,
?annotation46 .
?annotation34 faldo:begin ?pfsb35 ;
faldo:end ?pfse36 ;
up:ligand ?ligand37 ;
rdf:type up:Binding_Site_Annotation .
?pfsb35 faldo:position ?thisPositionOn38 ;
rdf:type faldo:ExactPosition .
?pfse36 faldo:position ?thisPositionOn39 ;
rdf:type faldo:ExactPosition .
?ligand37 rdfs:subClassOf chebi:29035 .
?annotation40 faldo:begin ?pfsb41 ;
faldo:end ?pfse42 ;
up:ligand ?ligand43 ;
rdf:type up:Binding_Site_Annotation .
?pfsb41 faldo:position ?thisPositionOn44 ;
rdf:type faldo:ExactPosition .
?pfse42 faldo:position ?thisPositionOn45 ;
rdf:type faldo:ExactPosition .
?ligand43 rdfs:subClassOf chebi:29035 .
?annotation46 faldo:begin ?pfsb47 ;
faldo:end ?pfse48 ;
up:ligand ?ligand49 ;
rdf:type up:Binding_Site_Annotation .
?pfsb47 faldo:position ?thisPositionOn50 ;
rdf:type faldo:ExactPosition .
?pfse48 faldo:position ?thisPositionOn51 ;
rdf:type faldo:ExactPosition .
?ligand49 rdfs:subClassOf chebi:29035 .
_:271049 a rdf:Statement ;
up:attribution _:271026 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:271050 a rdf:Statement ;
up:attribution _:271027 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:271051 a rdf:Statement ;
up:attribution _:271028 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:271052 a rdf:Statement ;
up:attribution _:271029 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:271053 a rdf:Statement ;
up:attribution _:271030 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:271054 a rdf:Statement ;
up:attribution _:271031 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:271055 a rdf:Statement ;
up:attribution _:271032 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:271056 a rdf:Statement ;
up:attribution _:271033 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation9 .
_:271057 a rdf:Statement ;
up:attribution _:271034 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:271058 a rdf:Statement ;
up:attribution _:271035 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:271059 a rdf:Statement ;
up:attribution _:271036 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:413 .
_:271060 a rdf:Statement ;
up:attribution _:271037 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:271061 a rdf:Statement ;
up:attribution _:271038 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:464 .
_:271062 a rdf:Statement ;
up:attribution _:271039 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0030145 .
_:271063 a rdf:Statement ;
up:attribution _:271040 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008973 .
_:271064 a rdf:Statement ;
up:attribution _:271041 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006018 .
_:271065 a rdf:Statement ;
up:attribution _:271042 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:271066 a rdf:Statement ;
up:source unirule:MF_00740 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:271067 a rdf:Statement ;
up:attribution _:271043 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation15 .
_:271068 a rdf:Statement ;
up:source unirule:MF_00740 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:271069 a rdf:Statement ;
up:attribution _:271044 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation21 .
_:271070 a rdf:Statement ;
up:source unirule:MF_00740 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:271071 a rdf:Statement ;
up:attribution _:271045 ;
rdf:subject ?pfs14 ;
rdf:predicate up:annotation ;
rdf:object ?annotation27 .
_:271072 a rdf:Statement ;
up:source unirule:MF_00740 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:271073 a rdf:Statement ;
up:attribution _:271046 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation34 .
_:271074 a rdf:Statement ;
up:source unirule:MF_00740 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:271075 a rdf:Statement ;
up:attribution _:271047 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation40 .
_:271076 a rdf:Statement ;
up:source unirule:MF_00740 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
_:271077 a rdf:Statement ;
up:attribution _:271048 ;
rdf:subject ?pfs33 ;
rdf:predicate up:annotation ;
rdf:object ?annotation46 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00740
#Rule MF_00740 Created by:? on:2005-02-28 Modified by:Catherine Rivoire on:2024-01-24
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00740 .
?thisOrganism rdfs:subClassOf+ taxon:2 .
BIND(URI(CONCAT(STR(?this), '#MF_00740a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00740a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00740a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00740a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00740a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00740a8')) AS ?annotation8) .
BIND(URI(CONCAT(STR(?this), '#MF_00740a9')) AS ?annotation9) .
BIND(URI(CONCAT(STR(?this), '#MF_00740a11')) AS ?annotation11) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch56 faldo:location ?templateMotifSequenceMatchRegionQ8DTU057 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8DTU059 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8DTU0MF_0074052 .
?templateMotifSequenceMatchRegionQ8DTU057 faldo:begin ?templateMotifSequenceMatchBeginQ8DTU058 .
?templateMotifSequenceMatchBeginQ8DTU058 faldo:position ?templateMotifSequenceMatchBeginPositionQ8DTU053 ;
faldo:reference isoform:Q8DTU0-1 .
?templateMotifSequenceProfileAlignmentOperationQ8DTU059 edam:has_input signature:MF_00740 ;
rdf:type edam:operation_0300 .
?targetMotifMatch60 faldo:location ?targetMotifMatchRegionMatch61 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0074063 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8DTU0MF_0074054 .
?targetMotifMatchRegionMatch61 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0074062 .
?targetMotifMatchRegionMatchBeginMF_0074062 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0074055 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0074063 edam:has_input signature:MF_00740 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8DTU0MF_0074052, 1, (STRLEN(?templateMotifCigarQ8DTU0MF_0074052) - STRLEN(REPLACE(?templateMotifCigarQ8DTU0MF_0074052, CONCAT('^(?:-*[^-]){', STR(((298 - ?templateMotifSequenceMatchBeginPositionQ8DTU053) + 1)), '}'), '')))), '[a-z]', '')) AS ?step164) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8DTU0MF_0074054, 1, (STRLEN(?targetMotifMatchCigarQ8DTU0MF_0074054) - STRLEN(REPLACE(?targetMotifMatchCigarQ8DTU0MF_0074054, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8DTU0MF_0074054, 1, (STRLEN(?targetMotifMatchCigarQ8DTU0MF_0074054) - STRLEN(REPLACE(?targetMotifMatchCigarQ8DTU0MF_0074054, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step164), '}'), '')))), '[^-]', ''))) AS ?step265) .
BIND(((?step265 + ?targetMotifMatchRegionMatchBeginPositionMF_0074055) - 1) AS ?thisPositionOn19) .
BIND(?thisPositionOn19 AS ?thisPositionOn20) .
BIND(?this AS ?pfs1t66) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn19))) AS ?pfsb16) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfse17) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn19, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8DTU0MF_0074052, 1, (STRLEN(?templateMotifCigarQ8DTU0MF_0074052) - STRLEN(REPLACE(?templateMotifCigarQ8DTU0MF_0074052, CONCAT('^(?:-*[^-]){', STR(((303 - ?templateMotifSequenceMatchBeginPositionQ8DTU053) + 1)), '}'), '')))), '[a-z]', '')) AS ?step167) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8DTU0MF_0074054, 1, (STRLEN(?targetMotifMatchCigarQ8DTU0MF_0074054) - STRLEN(REPLACE(?targetMotifMatchCigarQ8DTU0MF_0074054, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8DTU0MF_0074054, 1, (STRLEN(?targetMotifMatchCigarQ8DTU0MF_0074054) - STRLEN(REPLACE(?targetMotifMatchCigarQ8DTU0MF_0074054, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step167), '}'), '')))), '[^-]', ''))) AS ?step268) .
BIND(((?step268 + ?targetMotifMatchRegionMatchBeginPositionMF_0074055) - 1) AS ?thisPositionOn25) .
BIND(?thisPositionOn25 AS ?thisPositionOn26) .
BIND(?this AS ?pfs1t69) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn25))) AS ?pfsb22) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn26))) AS ?pfse23) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn25, 1) = 'H')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8DTU0MF_0074052, 1, (STRLEN(?templateMotifCigarQ8DTU0MF_0074052) - STRLEN(REPLACE(?templateMotifCigarQ8DTU0MF_0074052, CONCAT('^(?:-*[^-]){', STR(((351 - ?templateMotifSequenceMatchBeginPositionQ8DTU053) + 1)), '}'), '')))), '[a-z]', '')) AS ?step170) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8DTU0MF_0074054, 1, (STRLEN(?targetMotifMatchCigarQ8DTU0MF_0074054) - STRLEN(REPLACE(?targetMotifMatchCigarQ8DTU0MF_0074054, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8DTU0MF_0074054, 1, (STRLEN(?targetMotifMatchCigarQ8DTU0MF_0074054) - STRLEN(REPLACE(?targetMotifMatchCigarQ8DTU0MF_0074054, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step170), '}'), '')))), '[^-]', ''))) AS ?step271) .
BIND(((?step271 + ?targetMotifMatchRegionMatchBeginPositionMF_0074055) - 1) AS ?thisPositionOn31) .
BIND(?thisPositionOn31 AS ?thisPositionOn32) .
BIND(?this AS ?pfs1t72) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn31))) AS ?pfsb28) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn32))) AS ?pfse29) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn31, 1) = 'H')) .
BIND(?this AS ?pfs14) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch77 faldo:location ?templateMotifSequenceMatchRegionQ8DTU078 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8DTU080 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8DTU0MF_0074073 .
?templateMotifSequenceMatchRegionQ8DTU078 faldo:begin ?templateMotifSequenceMatchBeginQ8DTU079 .
?templateMotifSequenceMatchBeginQ8DTU079 faldo:position ?templateMotifSequenceMatchBeginPositionQ8DTU074 ;
faldo:reference isoform:Q8DTU0-1 .
?templateMotifSequenceProfileAlignmentOperationQ8DTU080 edam:has_input signature:MF_00740 ;
rdf:type edam:operation_0300 .
?targetMotifMatch81 faldo:location ?targetMotifMatchRegionMatch82 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0074084 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8DTU0MF_0074075 .
?targetMotifMatchRegionMatch82 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0074083 .
?targetMotifMatchRegionMatchBeginMF_0074083 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0074076 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0074084 edam:has_input signature:MF_00740 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8DTU0MF_0074073, 1, (STRLEN(?templateMotifCigarQ8DTU0MF_0074073) - STRLEN(REPLACE(?templateMotifCigarQ8DTU0MF_0074073, CONCAT('^(?:-*[^-]){', STR(((13 - ?templateMotifSequenceMatchBeginPositionQ8DTU074) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8DTU0MF_0074075, 1, (STRLEN(?targetMotifMatchCigarQ8DTU0MF_0074075) - STRLEN(REPLACE(?targetMotifMatchCigarQ8DTU0MF_0074075, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8DTU0MF_0074075, 1, (STRLEN(?targetMotifMatchCigarQ8DTU0MF_0074075) - STRLEN(REPLACE(?targetMotifMatchCigarQ8DTU0MF_0074075, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0074076) - 1) AS ?thisPositionOn38) .
BIND(?thisPositionOn38 AS ?thisPositionOn39) .
BIND(?this AS ?pfs2t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn38))) AS ?pfsb35) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn39))) AS ?pfse36) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn38, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8DTU0MF_0074073, 1, (STRLEN(?templateMotifCigarQ8DTU0MF_0074073) - STRLEN(REPLACE(?templateMotifCigarQ8DTU0MF_0074073, CONCAT('^(?:-*[^-]){', STR(((339 - ?templateMotifSequenceMatchBeginPositionQ8DTU074) + 1)), '}'), '')))), '[a-z]', '')) AS ?step188) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8DTU0MF_0074075, 1, (STRLEN(?targetMotifMatchCigarQ8DTU0MF_0074075) - STRLEN(REPLACE(?targetMotifMatchCigarQ8DTU0MF_0074075, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8DTU0MF_0074075, 1, (STRLEN(?targetMotifMatchCigarQ8DTU0MF_0074075) - STRLEN(REPLACE(?targetMotifMatchCigarQ8DTU0MF_0074075, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step188), '}'), '')))), '[^-]', ''))) AS ?step289) .
BIND(((?step289 + ?targetMotifMatchRegionMatchBeginPositionMF_0074076) - 1) AS ?thisPositionOn44) .
BIND(?thisPositionOn44 AS ?thisPositionOn45) .
BIND(?this AS ?pfs2t90) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn44))) AS ?pfsb41) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn45))) AS ?pfse42) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn44, 1) = 'D')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8DTU0MF_0074073, 1, (STRLEN(?templateMotifCigarQ8DTU0MF_0074073) - STRLEN(REPLACE(?templateMotifCigarQ8DTU0MF_0074073, CONCAT('^(?:-*[^-]){', STR(((340 - ?templateMotifSequenceMatchBeginPositionQ8DTU074) + 1)), '}'), '')))), '[a-z]', '')) AS ?step191) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8DTU0MF_0074075, 1, (STRLEN(?targetMotifMatchCigarQ8DTU0MF_0074075) - STRLEN(REPLACE(?targetMotifMatchCigarQ8DTU0MF_0074075, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8DTU0MF_0074075, 1, (STRLEN(?targetMotifMatchCigarQ8DTU0MF_0074075) - STRLEN(REPLACE(?targetMotifMatchCigarQ8DTU0MF_0074075, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step191), '}'), '')))), '[^-]', ''))) AS ?step292) .
BIND(((?step292 + ?targetMotifMatchRegionMatchBeginPositionMF_0074076) - 1) AS ?thisPositionOn50) .
BIND(?thisPositionOn50 AS ?thisPositionOn51) .
BIND(?this AS ?pfs2t93) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn50))) AS ?pfsb47) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn51))) AS ?pfse48) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn50, 1) = 'H')) .
BIND(?this AS ?pfs33) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag94) .
}
BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag94, ?UNBOUND_VARIABLE) AS ?case12) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag95) .
}
BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag95, ?UNBOUND_VARIABLE) AS ?case13) .
}
"xsd:string |
