| http://purl.uniprot.org/unirules/MF_00874#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:312555 up:source unirule:MF_00874 .
_:312556 up:source unirule:MF_00874 .
_:312557 up:source unirule:MF_00874 .
_:312558 up:source unirule:MF_00874 .
_:312559 up:source unirule:MF_00874 .
_:312560 up:source unirule:MF_00874 .
_:312561 up:source unirule:MF_00874 .
_:312562 up:source unirule:MF_00874 .
_:312563 up:source unirule:MF_00874 .
_:312564 up:source unirule:MF_00874 .
_:312565 up:source unirule:MF_00874 .
_:312566 up:source unirule:MF_00874 .
_:312567 up:source unirule:MF_00874 .
_:312568 up:source unirule:MF_00874 .
_:312569 up:source unirule:MF_00874 .
_:312570 up:source unirule:MF_00874 .
_:312571 up:source unirule:MF_00874 .
_:312572 up:source unirule:MF_00874 .
_:312573 up:source unirule:MF_00874 .
_:312574 up:source unirule:MF_00874 .
_:312575 up:source unirule:MF_00874 .
_:312576 up:source unirule:MF_00874 .
_:312577 up:source unirule:MF_00874 .
_:312578 up:source unirule:MF_00874 .
?this up:annotation ?annotation2 ,
?annotation3 ,
?annotation4 ,
?annotation6 ;
up:classifiedWith GO:0005737 ,
GO:0006412 ,
keyword:687 ,
keyword:689 ,
keyword:694 ,
keyword:699 ,
keyword:963 ;
up:recommendedName ?name0 .
?name0 up:fullName 'Small ribosomal subunit protein aS34' ;
rdf:type up:Structured_Name .
?gene1 skos:prefLabel 'rps34a' .
?annotation2 a up:Function_Annotation ;
rdfs:comment 'Component of the small ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. Binds 16S (small) rRNA.' .
?annotation3 a up:Subunit_Annotation ;
rdfs:comment 'Component of the 30S small ribosomal subunit.' .
?annotation4 a up:Subcellular_Location_Annotation .
?annotation4li5 up:cellularComponent .
?annotation6 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the archaeal ribosomal protein aS34 family.' .
?case7 up:classifiedWith GO:0008270 ,
keyword:479 ,
keyword:862 .
?pfs10 up:annotation ?annotation11 ,
?annotation17 ,
?annotation23 ,
?annotation29 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
up:ligand ?ligand14 ;
rdf:type up:Binding_Site_Annotation .
?pfsb12 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn16 ;
rdf:type faldo:ExactPosition .
?ligand14 rdfs:subClassOf chebi:29105 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
up:ligand ?ligand20 ;
rdf:type up:Binding_Site_Annotation .
?pfsb18 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn22 ;
rdf:type faldo:ExactPosition .
?ligand20 rdfs:subClassOf chebi:29105 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:29105 .
?annotation29 faldo:begin ?pfsb30 ;
faldo:end ?pfse31 ;
up:ligand ?ligand32 ;
rdf:type up:Binding_Site_Annotation .
?pfsb30 faldo:position ?thisPositionOn33 ;
rdf:type faldo:ExactPosition .
?pfse31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?ligand32 rdfs:subClassOf chebi:29105 .
?pfs35 up:annotation ?annotation36 ,
?annotation42 ,
?annotation48 ,
?annotation54 .
?annotation36 faldo:begin ?pfsb37 ;
faldo:end ?pfse38 ;
up:ligand ?ligand39 ;
rdf:type up:Binding_Site_Annotation .
?pfsb37 faldo:position ?thisPositionOn40 ;
rdf:type faldo:ExactPosition .
?pfse38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?ligand39 rdfs:subClassOf chebi:29105 .
?annotation42 faldo:begin ?pfsb43 ;
faldo:end ?pfse44 ;
up:ligand ?ligand45 ;
rdf:type up:Binding_Site_Annotation .
?pfsb43 faldo:position ?thisPositionOn46 ;
rdf:type faldo:ExactPosition .
?pfse44 faldo:position ?thisPositionOn47 ;
rdf:type faldo:ExactPosition .
?ligand45 rdfs:subClassOf chebi:29105 .
?annotation48 faldo:begin ?pfsb49 ;
faldo:end ?pfse50 ;
up:ligand ?ligand51 ;
rdf:type up:Binding_Site_Annotation .
?pfsb49 faldo:position ?thisPositionOn52 ;
rdf:type faldo:ExactPosition .
?pfse50 faldo:position ?thisPositionOn53 ;
rdf:type faldo:ExactPosition .
?ligand51 rdfs:subClassOf chebi:29105 .
?annotation54 faldo:begin ?pfsb55 ;
faldo:end ?pfse56 ;
up:ligand ?ligand57 ;
rdf:type up:Binding_Site_Annotation .
?pfsb55 faldo:position ?thisPositionOn58 ;
rdf:type faldo:ExactPosition .
?pfse56 faldo:position ?thisPositionOn59 ;
rdf:type faldo:ExactPosition .
?ligand57 rdfs:subClassOf chebi:29105 .
_:312579 a rdf:Statement ;
up:attribution _:312555 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:312580 a rdf:Statement ;
up:attribution _:312556 ;
rdf:subject ?gene1 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene1 .
_:312581 a rdf:Statement ;
up:attribution _:312557 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation2 .
_:312582 a rdf:Statement ;
up:attribution _:312558 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:312583 a rdf:Statement ;
up:attribution _:312559 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:312584 a rdf:Statement ;
up:attribution _:312560 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:312585 a rdf:Statement ;
up:attribution _:312561 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:963 .
_:312586 a rdf:Statement ;
up:attribution _:312562 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:694 .
_:312587 a rdf:Statement ;
up:attribution _:312563 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:687 .
_:312588 a rdf:Statement ;
up:attribution _:312564 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:689 .
_:312589 a rdf:Statement ;
up:attribution _:312565 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:699 .
_:312590 a rdf:Statement ;
up:attribution _:312566 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0005737 .
_:312591 a rdf:Statement ;
up:attribution _:312567 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0006412 .
_:312592 a rdf:Statement ;
up:attribution _:312568 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:862 .
_:312593 a rdf:Statement ;
up:attribution _:312569 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:479 .
_:312594 a rdf:Statement ;
up:attribution _:312570 ;
rdf:subject ?case7 ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0008270 .
_:312595 a rdf:Statement ;
up:source unirule:MF_00874 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:312596 a rdf:Statement ;
up:attribution _:312571 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:312597 a rdf:Statement ;
up:source unirule:MF_00874 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:312598 a rdf:Statement ;
up:attribution _:312572 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:312599 a rdf:Statement ;
up:source unirule:MF_00874 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:312600 a rdf:Statement ;
up:attribution _:312573 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:312601 a rdf:Statement ;
up:source unirule:MF_00874 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:312602 a rdf:Statement ;
up:attribution _:312574 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation29 .
_:312603 a rdf:Statement ;
up:source unirule:MF_00874 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:312604 a rdf:Statement ;
up:attribution _:312575 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation36 .
_:312605 a rdf:Statement ;
up:source unirule:MF_00874 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:312606 a rdf:Statement ;
up:attribution _:312576 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation42 .
_:312607 a rdf:Statement ;
up:source unirule:MF_00874 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:312608 a rdf:Statement ;
up:attribution _:312577 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation48 .
_:312609 a rdf:Statement ;
up:source unirule:MF_00874 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
_:312610 a rdf:Statement ;
up:attribution _:312578 ;
rdf:subject ?pfs35 ;
rdf:predicate up:annotation ;
rdf:object ?annotation54 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00874
#Rule MF_00874 Created by:? on:2025-10-15 Modified by:Catherine Rivoire on:2025-10-16
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00874 .
?thisOrganism rdfs:subClassOf+ taxon:2157 .
BIND(URI(CONCAT(STR(?this), '#MF_00874a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00874a2')) AS ?annotation2) .
BIND(URI(CONCAT(STR(?this), '#MF_00874a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00874a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00874a6')) AS ?annotation6) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch64 faldo:location ?templateMotifSequenceMatchRegionQ97ZK465 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97ZK467 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97ZK4MF_0087460 .
?templateMotifSequenceMatchRegionQ97ZK465 faldo:begin ?templateMotifSequenceMatchBeginQ97ZK466 .
?templateMotifSequenceMatchBeginQ97ZK466 faldo:position ?templateMotifSequenceMatchBeginPositionQ97ZK461 ;
faldo:reference isoform:Q97ZK4-1 .
?templateMotifSequenceProfileAlignmentOperationQ97ZK467 edam:has_input signature:MF_00874 ;
rdf:type edam:operation_0300 .
?targetMotifMatch68 faldo:location ?targetMotifMatchRegionMatch69 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0087471 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97ZK4MF_0087462 .
?targetMotifMatchRegionMatch69 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0087470 .
?targetMotifMatchRegionMatchBeginMF_0087470 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0087463 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0087471 edam:has_input signature:MF_00874 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_1) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZK4MF_0087460, 1, (STRLEN(?templateMotifCigarQ97ZK4MF_0087460) - STRLEN(REPLACE(?templateMotifCigarQ97ZK4MF_0087460, CONCAT('^(?:-*[^-]){', STR(((21 - ?templateMotifSequenceMatchBeginPositionQ97ZK461) + 1)), '}'), '')))), '[a-z]', '')) AS ?step172) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087462, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087462) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087462, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087462) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step172), '}'), '')))), '[^-]', ''))) AS ?step273) .
BIND(((?step273 + ?targetMotifMatchRegionMatchBeginPositionMF_0087463) - 1) AS ?thisPositionOn15) .
BIND(?thisPositionOn15 AS ?thisPositionOn16) .
BIND(?this AS ?pfs1t74) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn16))) AS ?pfse13) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn15, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZK4MF_0087460, 1, (STRLEN(?templateMotifCigarQ97ZK4MF_0087460) - STRLEN(REPLACE(?templateMotifCigarQ97ZK4MF_0087460, CONCAT('^(?:-*[^-]){', STR(((24 - ?templateMotifSequenceMatchBeginPositionQ97ZK461) + 1)), '}'), '')))), '[a-z]', '')) AS ?step175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087462, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087462) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087462, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087462) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step175), '}'), '')))), '[^-]', ''))) AS ?step276) .
BIND(((?step276 + ?targetMotifMatchRegionMatchBeginPositionMF_0087463) - 1) AS ?thisPositionOn21) .
BIND(?thisPositionOn21 AS ?thisPositionOn22) .
BIND(?this AS ?pfs1t77) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn22))) AS ?pfse19) .
FILTER (REGEX('[CH]', SUBSTR(?thisSequenceValue, ?thisPositionOn21, 1))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZK4MF_0087460, 1, (STRLEN(?templateMotifCigarQ97ZK4MF_0087460) - STRLEN(REPLACE(?templateMotifCigarQ97ZK4MF_0087460, CONCAT('^(?:-*[^-]){', STR(((50 - ?templateMotifSequenceMatchBeginPositionQ97ZK461) + 1)), '}'), '')))), '[a-z]', '')) AS ?step178) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087462, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087462) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087462, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087462) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step178), '}'), '')))), '[^-]', ''))) AS ?step279) .
BIND(((?step279 + ?targetMotifMatchRegionMatchBeginPositionMF_0087463) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs1t80) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZK4MF_0087460, 1, (STRLEN(?templateMotifCigarQ97ZK4MF_0087460) - STRLEN(REPLACE(?templateMotifCigarQ97ZK4MF_0087460, CONCAT('^(?:-*[^-]){', STR(((53 - ?templateMotifSequenceMatchBeginPositionQ97ZK461) + 1)), '}'), '')))), '[a-z]', '')) AS ?step181) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087462, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087462) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087462, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087462) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087462, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step181), '}'), '')))), '[^-]', ''))) AS ?step282) .
BIND(((?step282 + ?targetMotifMatchRegionMatchBeginPositionMF_0087463) - 1) AS ?thisPositionOn33) .
BIND(?thisPositionOn33 AS ?thisPositionOn34) .
BIND(?this AS ?pfs1t83) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn33))) AS ?pfsb30) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfse31) .
FILTER (REGEX('[CDE]', SUBSTR(?thisSequenceValue, ?thisPositionOn33, 1))) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch88 faldo:location ?templateMotifSequenceMatchRegionQ97ZK489 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ97ZK491 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ97ZK4MF_0087484 .
?templateMotifSequenceMatchRegionQ97ZK489 faldo:begin ?templateMotifSequenceMatchBeginQ97ZK490 .
?templateMotifSequenceMatchBeginQ97ZK490 faldo:position ?templateMotifSequenceMatchBeginPositionQ97ZK485 ;
faldo:reference isoform:Q97ZK4-1 .
?templateMotifSequenceProfileAlignmentOperationQ97ZK491 edam:has_input signature:MF_00874 ;
rdf:type edam:operation_0300 .
?targetMotifMatch92 faldo:location ?targetMotifMatchRegionMatch93 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0087495 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ97ZK4MF_0087486 .
?targetMotifMatchRegionMatch93 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0087494 .
?targetMotifMatchRegionMatchBeginMF_0087494 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0087487 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0087495 edam:has_input signature:MF_00874 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagFTGRP_2) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZK4MF_0087484, 1, (STRLEN(?templateMotifCigarQ97ZK4MF_0087484) - STRLEN(REPLACE(?templateMotifCigarQ97ZK4MF_0087484, CONCAT('^(?:-*[^-]){', STR(((38 - ?templateMotifSequenceMatchBeginPositionQ97ZK485) + 1)), '}'), '')))), '[a-z]', '')) AS ?step196) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087486, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087486) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087486, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087486) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step196), '}'), '')))), '[^-]', ''))) AS ?step297) .
BIND(((?step297 + ?targetMotifMatchRegionMatchBeginPositionMF_0087487) - 1) AS ?thisPositionOn40) .
BIND(?thisPositionOn40 AS ?thisPositionOn41) .
BIND(?this AS ?pfs2t98) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn40))) AS ?pfsb37) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfse38) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn40, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZK4MF_0087484, 1, (STRLEN(?templateMotifCigarQ97ZK4MF_0087484) - STRLEN(REPLACE(?templateMotifCigarQ97ZK4MF_0087484, CONCAT('^(?:-*[^-]){', STR(((41 - ?templateMotifSequenceMatchBeginPositionQ97ZK485) + 1)), '}'), '')))), '[a-z]', '')) AS ?step199) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087486, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087486) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087486, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087486) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step199), '}'), '')))), '[^-]', ''))) AS ?step2100) .
BIND(((?step2100 + ?targetMotifMatchRegionMatchBeginPositionMF_0087487) - 1) AS ?thisPositionOn46) .
BIND(?thisPositionOn46 AS ?thisPositionOn47) .
BIND(?this AS ?pfs2t101) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn46))) AS ?pfsb43) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn47))) AS ?pfse44) .
FILTER (REGEX('[CD]', SUBSTR(?thisSequenceValue, ?thisPositionOn46, 1))) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZK4MF_0087484, 1, (STRLEN(?templateMotifCigarQ97ZK4MF_0087484) - STRLEN(REPLACE(?templateMotifCigarQ97ZK4MF_0087484, CONCAT('^(?:-*[^-]){', STR(((61 - ?templateMotifSequenceMatchBeginPositionQ97ZK485) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1102) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087486, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087486) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087486, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087486) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1102), '}'), '')))), '[^-]', ''))) AS ?step2103) .
BIND(((?step2103 + ?targetMotifMatchRegionMatchBeginPositionMF_0087487) - 1) AS ?thisPositionOn52) .
BIND(?thisPositionOn52 AS ?thisPositionOn53) .
BIND(?this AS ?pfs2t104) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn52))) AS ?pfsb49) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn53))) AS ?pfse50) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn52, 1) = 'C')) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ97ZK4MF_0087484, 1, (STRLEN(?templateMotifCigarQ97ZK4MF_0087484) - STRLEN(REPLACE(?templateMotifCigarQ97ZK4MF_0087484, CONCAT('^(?:-*[^-]){', STR(((64 - ?templateMotifSequenceMatchBeginPositionQ97ZK485) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1105) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087486, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087486) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ97ZK4MF_0087486, 1, (STRLEN(?targetMotifMatchCigarQ97ZK4MF_0087486) - STRLEN(REPLACE(?targetMotifMatchCigarQ97ZK4MF_0087486, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1105), '}'), '')))), '[^-]', ''))) AS ?step2106) .
BIND(((?step2106 + ?targetMotifMatchRegionMatchBeginPositionMF_0087487) - 1) AS ?thisPositionOn58) .
BIND(?thisPositionOn58 AS ?thisPositionOn59) .
BIND(?this AS ?pfs2t107) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn58))) AS ?pfsb55) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn59))) AS ?pfse56) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn58, 1) = 'C')) .
BIND(?this AS ?pfs35) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag108) .
}
BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag108, ?UNBOUND_VARIABLE) AS ?case7) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag109) .
}
BIND(IF((BOUND(?tagFTGRP_1) || BOUND(?tagFTGRP_2)), ?caseWithTag109, ?UNBOUND_VARIABLE) AS ?case8) .
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag110) .
}
BIND(IF((BOUND(?tagFTGRP_2) || BOUND(?tagFTGRP_1)), ?caseWithTag110, ?UNBOUND_VARIABLE) AS ?case9) .
}
"xsd:string |
