| http://purl.uniprot.org/unirules/MF_00933#construct | http://www.w3.org/ns/shacl#construct | "CONSTRUCT {
_:324542 up:source unirule:MF_00933 .
_:324543 up:source unirule:MF_00933 .
_:324544 up:source unirule:MF_00933 .
_:324545 up:source unirule:MF_00933 .
_:324546 up:source unirule:MF_00933 .
_:324547 up:source unirule:MF_00933 .
_:324548 up:source unirule:MF_00933 .
_:324549 up:source unirule:MF_00933 .
_:324550 up:source unirule:MF_00933 .
_:324551 up:source unirule:MF_00933 .
_:324552 up:source unirule:MF_00933 .
_:324553 up:source unirule:MF_00933 .
_:324554 up:source unirule:MF_00933 .
_:324555 up:source unirule:MF_00933 .
_:324556 up:source unirule:MF_00933 .
_:324557 up:source unirule:MF_00933 .
_:324558 up:source unirule:MF_00933 .
_:324559 up:source unirule:MF_00933 .
_:324560 up:source unirule:MF_00933 .
_:324561 up:source unirule:MF_00933 .
_:324562 up:source unirule:MF_00933 .
?this up:alternativeName ?name1 ;
up:annotation ?annotation3 ,
?annotation4 ,
?annotation6 ,
?annotation8 ;
up:classifiedWith GO:0042597 ,
GO:0047686 ,
keyword:574 ,
keyword:808 ;
up:recommendedName ?name0 .
?name0 up:ecName '2.8.2.22' ;
up:fullName 'Arylsulfate sulfotransferase AssT' ;
rdf:type up:Structured_Name .
?name1 up:fullName 'Aryl sulfotransferase AssT' ;
rdf:type up:Structured_Name .
?gene2 skos:prefLabel 'assT' .
?annotation3 a up:Function_Annotation ;
rdfs:comment 'Catalyses the transfer of a sulfate group from a phenyl sulfate ester to other phenolic compounds.' .
?annotation4 up:activity ?activity5 ;
rdf:type up:Catalytic_Activity_Annotation .
?activity5 up:catalyticActivity ;
up:enzymeClass .
?annotation6 a up:Subcellular_Location_Annotation .
?annotation6li7 up:cellularComponent .
?annotation8 a up:Similarity_Annotation ;
rdfs:comment 'Belongs to the aryl sulfotransferase family.' .
?case9 up:classifiedWith keyword:1015 .
?pfs10 up:annotation ?annotation11 .
?annotation11 faldo:begin ?pfsb12 ;
faldo:end ?pfse13 ;
rdf:type up:Disulfide_Bond_Annotation .
?pfsb12 faldo:position ?thisPositionOn14 ;
rdf:type faldo:ExactPosition .
?pfse13 faldo:position ?thisPositionOn15 ;
rdf:type faldo:ExactPosition .
?pfs16 up:annotation ?annotation17 .
?annotation17 faldo:begin ?pfsb18 ;
faldo:end ?pfse19 ;
rdf:type up:Active_Site_Annotation ;
rdfs:comment 'Nucleophile; sulfurylated histidine covalent intermediate' .
?pfsb18 faldo:position ?thisPositionOn20 ;
rdf:type faldo:ExactPosition .
?pfse19 faldo:position ?thisPositionOn21 ;
rdf:type faldo:ExactPosition .
?pfs22 up:annotation ?annotation23 .
?annotation23 faldo:begin ?pfsb24 ;
faldo:end ?pfse25 ;
up:ligand ?ligand26 ;
rdf:type up:Binding_Site_Annotation .
?pfsb24 faldo:position ?thisPositionOn27 ;
rdf:type faldo:ExactPosition .
?pfse25 faldo:position ?thisPositionOn28 ;
rdf:type faldo:ExactPosition .
?ligand26 rdfs:subClassOf chebi:33853 .
?pfs29 up:annotation ?annotation30 .
?annotation30 faldo:begin ?pfsb31 ;
faldo:end ?pfse32 ;
up:ligand ?ligand33 ;
rdf:type up:Binding_Site_Annotation .
?pfsb31 faldo:position ?thisPositionOn34 ;
rdf:type faldo:ExactPosition .
?pfse32 faldo:position ?thisPositionOn35 ;
rdf:type faldo:ExactPosition .
?ligand33 rdfs:subClassOf chebi:33853 .
?pfs36 up:annotation ?annotation37 .
?annotation37 faldo:begin ?pfsb38 ;
faldo:end ?pfse39 ;
up:ligand ?ligand40 ;
rdf:type up:Binding_Site_Annotation .
?pfsb38 faldo:position ?thisPositionOn41 ;
rdf:type faldo:ExactPosition .
?pfse39 faldo:position ?thisPositionOn42 ;
rdf:type faldo:ExactPosition .
?ligand40 rdfs:subClassOf chebi:140317 .
?pfs43 up:annotation ?annotation44 .
?annotation44 faldo:begin ?pfsb45 ;
faldo:end ?pfse46 ;
up:ligand ?ligand47 ;
rdf:type up:Binding_Site_Annotation .
?pfsb45 faldo:position ?thisPositionOn48 ;
rdf:type faldo:ExactPosition .
?pfse46 faldo:position ?thisPositionOn49 ;
rdf:type faldo:ExactPosition .
?ligand47 rdfs:subClassOf chebi:140317 .
?pfs50 up:annotation ?annotation51 .
?annotation51 faldo:begin ?pfsb52 ;
faldo:end ?pfse53 ;
up:ligand ?ligand54 ;
rdf:type up:Binding_Site_Annotation .
?pfsb52 faldo:position ?thisPositionOn55 ;
rdf:type faldo:ExactPosition .
?pfse53 faldo:position ?thisPositionOn56 ;
rdf:type faldo:ExactPosition .
?ligand54 rdfs:subClassOf chebi:33853 .
?pfs57 up:annotation ?annotation58 .
?annotation58 faldo:begin ?pfsb59 ;
faldo:end ?pfse60 ;
up:ligand ?ligand61 ;
rdf:type up:Binding_Site_Annotation .
?pfsb59 faldo:position ?thisPositionOn62 ;
rdf:type faldo:ExactPosition .
?pfse60 faldo:position ?thisPositionOn63 ;
rdf:type faldo:ExactPosition .
?ligand61 rdfs:subClassOf chebi:140317 .
?sam64 up:classifiedWith keyword:732 .
?signal65 faldo:begin ?signalb66 ;
faldo:end ?signale67 .
?signalb66 faldo:position ?signalbp68 .
?signale67 faldo:position ?signalep69 .
?keyword70 up:range ?signal65 .
_:324563 a rdf:Statement ;
up:attribution _:324542 ;
rdf:subject ?this ;
rdf:predicate up:recommendedName ;
rdf:object ?name0 .
_:324564 a rdf:Statement ;
up:attribution _:324543 ;
rdf:subject ?this ;
rdf:predicate up:alternativeName ;
rdf:object ?name1 .
_:324565 a rdf:Statement ;
up:attribution _:324544 ;
rdf:subject ?gene2 ;
rdf:predicate up:encodedBy ;
rdf:object ?gene2 .
_:324566 a rdf:Statement ;
up:attribution _:324545 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation3 .
_:324567 a rdf:Statement ;
up:attribution _:324546 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation4 .
_:324568 a rdf:Statement ;
up:attribution _:324547 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation6 .
_:324569 a rdf:Statement ;
up:attribution _:324548 ;
rdf:subject ?this ;
rdf:predicate up:annotation ;
rdf:object ?annotation8 .
_:324570 a rdf:Statement ;
up:attribution _:324549 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:574 .
_:324571 a rdf:Statement ;
up:attribution _:324550 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:808 .
_:324572 a rdf:Statement ;
up:attribution _:324551 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0047686 .
_:324573 a rdf:Statement ;
up:attribution _:324552 ;
rdf:subject ?this ;
rdf:predicate up:classifiedWith ;
rdf:object GO:0042597 .
_:324574 a rdf:Statement ;
up:attribution _:324553 ;
rdf:subject ?case9 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:1015 .
_:324575 a rdf:Statement ;
up:source unirule:MF_00933 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:324576 a rdf:Statement ;
up:attribution _:324554 ;
rdf:subject ?pfs10 ;
rdf:predicate up:annotation ;
rdf:object ?annotation11 .
_:324577 a rdf:Statement ;
up:source unirule:MF_00933 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:324578 a rdf:Statement ;
up:attribution _:324555 ;
rdf:subject ?pfs16 ;
rdf:predicate up:annotation ;
rdf:object ?annotation17 .
_:324579 a rdf:Statement ;
up:source unirule:MF_00933 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:324580 a rdf:Statement ;
up:attribution _:324556 ;
rdf:subject ?pfs22 ;
rdf:predicate up:annotation ;
rdf:object ?annotation23 .
_:324581 a rdf:Statement ;
up:source unirule:MF_00933 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:324582 a rdf:Statement ;
up:attribution _:324557 ;
rdf:subject ?pfs29 ;
rdf:predicate up:annotation ;
rdf:object ?annotation30 .
_:324583 a rdf:Statement ;
up:source unirule:MF_00933 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:324584 a rdf:Statement ;
up:attribution _:324558 ;
rdf:subject ?pfs36 ;
rdf:predicate up:annotation ;
rdf:object ?annotation37 .
_:324585 a rdf:Statement ;
up:source unirule:MF_00933 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:324586 a rdf:Statement ;
up:attribution _:324559 ;
rdf:subject ?pfs43 ;
rdf:predicate up:annotation ;
rdf:object ?annotation44 .
_:324587 a rdf:Statement ;
up:source unirule:MF_00933 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:324588 a rdf:Statement ;
up:attribution _:324560 ;
rdf:subject ?pfs50 ;
rdf:predicate up:annotation ;
rdf:object ?annotation51 .
_:324589 a rdf:Statement ;
up:source unirule:MF_00933 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:324590 a rdf:Statement ;
up:attribution _:324561 ;
rdf:subject ?pfs57 ;
rdf:predicate up:annotation ;
rdf:object ?annotation58 .
_:324591 a rdf:Statement ;
up:attribution _:324562 ;
rdf:subject ?sam64 ;
rdf:predicate up:classifiedWith ;
rdf:object keyword:732 .
}
WHERE {
#baseURI: http://purl.uniprot.org/unirule/MF_00933
#Rule MF_00933 Created by:? on:2013-01-15 Modified by:Elisabeth Coudert on:2025-10-07
?this up:organism ?thisOrganism ;
rdfs:seeAlso signature:MF_00933 .
?thisOrganism rdfs:subClassOf+ taxon:91347 .
BIND(URI(CONCAT(STR(?this), '#MF_00933a0')) AS ?name0) .
BIND(URI(CONCAT(STR(?this), '#MF_00933a1')) AS ?name1) .
BIND(URI(CONCAT(STR(?this), '#MF_00933a3')) AS ?annotation3) .
BIND(URI(CONCAT(STR(?this), '#MF_00933a4')) AS ?annotation4) .
BIND(URI(CONCAT(STR(?this), '#MF_00933a6')) AS ?annotation6) .
BIND(URI(CONCAT(STR(?this), '#MF_00933a8')) AS ?annotation8) .
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch75 faldo:location ?templateMotifSequenceMatchRegionQ8FDI476 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8FDI478 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8FDI4MF_0093371 .
?templateMotifSequenceMatchRegionQ8FDI476 faldo:begin ?templateMotifSequenceMatchBeginQ8FDI477 .
?templateMotifSequenceMatchBeginQ8FDI477 faldo:position ?templateMotifSequenceMatchBeginPositionQ8FDI472 ;
faldo:reference isoform:Q8FDI4-1 .
?templateMotifSequenceProfileAlignmentOperationQ8FDI478 edam:has_input signature:MF_00933 ;
rdf:type edam:operation_0300 .
?targetMotifMatch79 faldo:location ?targetMotifMatchRegionMatch80 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0093382 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8FDI4MF_0093373 .
?targetMotifMatchRegionMatch80 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0093381 .
?targetMotifMatchRegionMatchBeginMF_0093381 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093374 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0093382 edam:has_input signature:MF_00933 ;
rdf:type edam:operation_0300 .
BIND(?this AS ?tagdisulf) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8FDI4MF_0093371, 1, (STRLEN(?templateMotifCigarQ8FDI4MF_0093371) - STRLEN(REPLACE(?templateMotifCigarQ8FDI4MF_0093371, CONCAT('^(?:-*[^-]){', STR(((445 - ?templateMotifSequenceMatchBeginPositionQ8FDI472) + 1)), '}'), '')))), '[a-z]', '')) AS ?step183) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8FDI4MF_0093373, 1, (STRLEN(?targetMotifMatchCigarQ8FDI4MF_0093373) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FDI4MF_0093373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8FDI4MF_0093373, 1, (STRLEN(?targetMotifMatchCigarQ8FDI4MF_0093373) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FDI4MF_0093373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step183), '}'), '')))), '[^-]', ''))) AS ?step284) .
BIND(((?step284 + ?targetMotifMatchRegionMatchBeginPositionMF_0093374) - 1) AS ?thisPositionOn14) .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8FDI4MF_0093371, 1, (STRLEN(?templateMotifCigarQ8FDI4MF_0093371) - STRLEN(REPLACE(?templateMotifCigarQ8FDI4MF_0093371, CONCAT('^(?:-*[^-]){', STR(((451 - ?templateMotifSequenceMatchBeginPositionQ8FDI472) + 1)), '}'), '')))), '[a-z]', '')) AS ?step185) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8FDI4MF_0093373, 1, (STRLEN(?targetMotifMatchCigarQ8FDI4MF_0093373) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FDI4MF_0093373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8FDI4MF_0093373, 1, (STRLEN(?targetMotifMatchCigarQ8FDI4MF_0093373) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FDI4MF_0093373, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step185), '}'), '')))), '[^-]', ''))) AS ?step286) .
BIND(((?step286 + ?targetMotifMatchRegionMatchBeginPositionMF_0093374) - 1) AS ?thisPositionOn15) .
BIND(?this AS ?pfs1t87) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn14))) AS ?pfsb12) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn15))) AS ?pfse13) .
FILTER (REGEX('C[ARNDCQEGHILKMFPSTWYVBZJUOX]*C', SUBSTR(?thisSequenceValue, ?thisPositionOn14, (?thisPositionOn15 - ?thisPositionOn14)))) .
BIND(URI(CONCAT(STR(?this), '#MF_00933a11')) AS ?annotation11) .
BIND(?this AS ?pfs10) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch92 faldo:location ?templateMotifSequenceMatchRegionQ8FDI493 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8FDI495 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8FDI4MF_0093388 .
?templateMotifSequenceMatchRegionQ8FDI493 faldo:begin ?templateMotifSequenceMatchBeginQ8FDI494 .
?templateMotifSequenceMatchBeginQ8FDI494 faldo:position ?templateMotifSequenceMatchBeginPositionQ8FDI489 ;
faldo:reference isoform:Q8FDI4-1 .
?templateMotifSequenceProfileAlignmentOperationQ8FDI495 edam:has_input signature:MF_00933 ;
rdf:type edam:operation_0300 .
?targetMotifMatch96 faldo:location ?targetMotifMatchRegionMatch97 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_0093399 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8FDI4MF_0093390 .
?targetMotifMatchRegionMatch97 faldo:begin ?targetMotifMatchRegionMatchBeginMF_0093398 .
?targetMotifMatchRegionMatchBeginMF_0093398 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_0093391 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_0093399 edam:has_input signature:MF_00933 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8FDI4MF_0093388, 1, (STRLEN(?templateMotifCigarQ8FDI4MF_0093388) - STRLEN(REPLACE(?templateMotifCigarQ8FDI4MF_0093388, CONCAT('^(?:-*[^-]){', STR(((463 - ?templateMotifSequenceMatchBeginPositionQ8FDI489) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1100) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8FDI4MF_0093390, 1, (STRLEN(?targetMotifMatchCigarQ8FDI4MF_0093390) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FDI4MF_0093390, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8FDI4MF_0093390, 1, (STRLEN(?targetMotifMatchCigarQ8FDI4MF_0093390) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FDI4MF_0093390, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1100), '}'), '')))), '[^-]', ''))) AS ?step2101) .
BIND(((?step2101 + ?targetMotifMatchRegionMatchBeginPositionMF_0093391) - 1) AS ?thisPositionOn20) .
BIND(?thisPositionOn20 AS ?thisPositionOn21) .
BIND(?this AS ?pfs2t102) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn20))) AS ?pfsb18) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn21))) AS ?pfse19) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn20, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00933a17')) AS ?annotation17) .
BIND(?this AS ?pfs16) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch107 faldo:location ?templateMotifSequenceMatchRegionQ8FDI4108 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8FDI4110 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8FDI4MF_00933103 .
?templateMotifSequenceMatchRegionQ8FDI4108 faldo:begin ?templateMotifSequenceMatchBeginQ8FDI4109 .
?templateMotifSequenceMatchBeginQ8FDI4109 faldo:position ?templateMotifSequenceMatchBeginPositionQ8FDI4104 ;
faldo:reference isoform:Q8FDI4-1 .
?templateMotifSequenceProfileAlignmentOperationQ8FDI4110 edam:has_input signature:MF_00933 ;
rdf:type edam:operation_0300 .
?targetMotifMatch111 faldo:location ?targetMotifMatchRegionMatch112 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00933114 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8FDI4MF_00933105 .
?targetMotifMatchRegionMatch112 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00933113 .
?targetMotifMatchRegionMatchBeginMF_00933113 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00933106 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00933114 edam:has_input signature:MF_00933 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8FDI4MF_00933103, 1, (STRLEN(?templateMotifCigarQ8FDI4MF_00933103) - STRLEN(REPLACE(?templateMotifCigarQ8FDI4MF_00933103, CONCAT('^(?:-*[^-]){', STR(((279 - ?templateMotifSequenceMatchBeginPositionQ8FDI4104) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1115) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8FDI4MF_00933105, 1, (STRLEN(?targetMotifMatchCigarQ8FDI4MF_00933105) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FDI4MF_00933105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8FDI4MF_00933105, 1, (STRLEN(?targetMotifMatchCigarQ8FDI4MF_00933105) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FDI4MF_00933105, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1115), '}'), '')))), '[^-]', ''))) AS ?step2116) .
BIND(((?step2116 + ?targetMotifMatchRegionMatchBeginPositionMF_00933106) - 1) AS ?thisPositionOn27) .
BIND(?thisPositionOn27 AS ?thisPositionOn28) .
BIND(?this AS ?pfs2t117) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn27))) AS ?pfsb24) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn28))) AS ?pfse25) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn27, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00933a23')) AS ?annotation23) .
BIND(?this AS ?pfs22) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch122 faldo:location ?templateMotifSequenceMatchRegionQ8FDI4123 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8FDI4125 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8FDI4MF_00933118 .
?templateMotifSequenceMatchRegionQ8FDI4123 faldo:begin ?templateMotifSequenceMatchBeginQ8FDI4124 .
?templateMotifSequenceMatchBeginQ8FDI4124 faldo:position ?templateMotifSequenceMatchBeginPositionQ8FDI4119 ;
faldo:reference isoform:Q8FDI4-1 .
?templateMotifSequenceProfileAlignmentOperationQ8FDI4125 edam:has_input signature:MF_00933 ;
rdf:type edam:operation_0300 .
?targetMotifMatch126 faldo:location ?targetMotifMatchRegionMatch127 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00933129 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8FDI4MF_00933120 .
?targetMotifMatchRegionMatch127 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00933128 .
?targetMotifMatchRegionMatchBeginMF_00933128 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00933121 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00933129 edam:has_input signature:MF_00933 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8FDI4MF_00933118, 1, (STRLEN(?templateMotifCigarQ8FDI4MF_00933118) - STRLEN(REPLACE(?templateMotifCigarQ8FDI4MF_00933118, CONCAT('^(?:-*[^-]){', STR(((383 - ?templateMotifSequenceMatchBeginPositionQ8FDI4119) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1130) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8FDI4MF_00933120, 1, (STRLEN(?targetMotifMatchCigarQ8FDI4MF_00933120) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FDI4MF_00933120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8FDI4MF_00933120, 1, (STRLEN(?targetMotifMatchCigarQ8FDI4MF_00933120) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FDI4MF_00933120, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1130), '}'), '')))), '[^-]', ''))) AS ?step2131) .
BIND(((?step2131 + ?targetMotifMatchRegionMatchBeginPositionMF_00933121) - 1) AS ?thisPositionOn34) .
BIND(?thisPositionOn34 AS ?thisPositionOn35) .
BIND(?this AS ?pfs2t132) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn34))) AS ?pfsb31) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn35))) AS ?pfse32) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn34, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00933a30')) AS ?annotation30) .
BIND(?this AS ?pfs29) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch137 faldo:location ?templateMotifSequenceMatchRegionQ8FDI4138 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8FDI4140 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8FDI4MF_00933133 .
?templateMotifSequenceMatchRegionQ8FDI4138 faldo:begin ?templateMotifSequenceMatchBeginQ8FDI4139 .
?templateMotifSequenceMatchBeginQ8FDI4139 faldo:position ?templateMotifSequenceMatchBeginPositionQ8FDI4134 ;
faldo:reference isoform:Q8FDI4-1 .
?templateMotifSequenceProfileAlignmentOperationQ8FDI4140 edam:has_input signature:MF_00933 ;
rdf:type edam:operation_0300 .
?targetMotifMatch141 faldo:location ?targetMotifMatchRegionMatch142 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00933144 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8FDI4MF_00933135 .
?targetMotifMatchRegionMatch142 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00933143 .
?targetMotifMatchRegionMatchBeginMF_00933143 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00933136 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00933144 edam:has_input signature:MF_00933 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8FDI4MF_00933133, 1, (STRLEN(?templateMotifCigarQ8FDI4MF_00933133) - STRLEN(REPLACE(?templateMotifCigarQ8FDI4MF_00933133, CONCAT('^(?:-*[^-]){', STR(((383 - ?templateMotifSequenceMatchBeginPositionQ8FDI4134) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1145) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8FDI4MF_00933135, 1, (STRLEN(?targetMotifMatchCigarQ8FDI4MF_00933135) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FDI4MF_00933135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8FDI4MF_00933135, 1, (STRLEN(?targetMotifMatchCigarQ8FDI4MF_00933135) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FDI4MF_00933135, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1145), '}'), '')))), '[^-]', ''))) AS ?step2146) .
BIND(((?step2146 + ?targetMotifMatchRegionMatchBeginPositionMF_00933136) - 1) AS ?thisPositionOn41) .
BIND(?thisPositionOn41 AS ?thisPositionOn42) .
BIND(?this AS ?pfs2t147) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn41))) AS ?pfsb38) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn42))) AS ?pfse39) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn41, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00933a37')) AS ?annotation37) .
BIND(?this AS ?pfs36) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch152 faldo:location ?templateMotifSequenceMatchRegionQ8FDI4153 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8FDI4155 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8FDI4MF_00933148 .
?templateMotifSequenceMatchRegionQ8FDI4153 faldo:begin ?templateMotifSequenceMatchBeginQ8FDI4154 .
?templateMotifSequenceMatchBeginQ8FDI4154 faldo:position ?templateMotifSequenceMatchBeginPositionQ8FDI4149 ;
faldo:reference isoform:Q8FDI4-1 .
?templateMotifSequenceProfileAlignmentOperationQ8FDI4155 edam:has_input signature:MF_00933 ;
rdf:type edam:operation_0300 .
?targetMotifMatch156 faldo:location ?targetMotifMatchRegionMatch157 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00933159 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8FDI4MF_00933150 .
?targetMotifMatchRegionMatch157 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00933158 .
?targetMotifMatchRegionMatchBeginMF_00933158 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00933151 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00933159 edam:has_input signature:MF_00933 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8FDI4MF_00933148, 1, (STRLEN(?templateMotifCigarQ8FDI4MF_00933148) - STRLEN(REPLACE(?templateMotifCigarQ8FDI4MF_00933148, CONCAT('^(?:-*[^-]){', STR(((385 - ?templateMotifSequenceMatchBeginPositionQ8FDI4149) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1160) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8FDI4MF_00933150, 1, (STRLEN(?targetMotifMatchCigarQ8FDI4MF_00933150) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FDI4MF_00933150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8FDI4MF_00933150, 1, (STRLEN(?targetMotifMatchCigarQ8FDI4MF_00933150) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FDI4MF_00933150, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1160), '}'), '')))), '[^-]', ''))) AS ?step2161) .
BIND(((?step2161 + ?targetMotifMatchRegionMatchBeginPositionMF_00933151) - 1) AS ?thisPositionOn48) .
BIND(?thisPositionOn48 AS ?thisPositionOn49) .
BIND(?this AS ?pfs2t162) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn48))) AS ?pfsb45) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn49))) AS ?pfse46) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn48, 1) = 'N')) .
BIND(URI(CONCAT(STR(?this), '#MF_00933a44')) AS ?annotation44) .
BIND(?this AS ?pfs43) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch167 faldo:location ?templateMotifSequenceMatchRegionQ8FDI4168 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8FDI4170 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8FDI4MF_00933163 .
?templateMotifSequenceMatchRegionQ8FDI4168 faldo:begin ?templateMotifSequenceMatchBeginQ8FDI4169 .
?templateMotifSequenceMatchBeginQ8FDI4169 faldo:position ?templateMotifSequenceMatchBeginPositionQ8FDI4164 ;
faldo:reference isoform:Q8FDI4-1 .
?templateMotifSequenceProfileAlignmentOperationQ8FDI4170 edam:has_input signature:MF_00933 ;
rdf:type edam:operation_0300 .
?targetMotifMatch171 faldo:location ?targetMotifMatchRegionMatch172 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00933174 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8FDI4MF_00933165 .
?targetMotifMatchRegionMatch172 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00933173 .
?targetMotifMatchRegionMatchBeginMF_00933173 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00933166 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00933174 edam:has_input signature:MF_00933 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8FDI4MF_00933163, 1, (STRLEN(?templateMotifCigarQ8FDI4MF_00933163) - STRLEN(REPLACE(?templateMotifCigarQ8FDI4MF_00933163, CONCAT('^(?:-*[^-]){', STR(((463 - ?templateMotifSequenceMatchBeginPositionQ8FDI4164) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1175) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8FDI4MF_00933165, 1, (STRLEN(?targetMotifMatchCigarQ8FDI4MF_00933165) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FDI4MF_00933165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8FDI4MF_00933165, 1, (STRLEN(?targetMotifMatchCigarQ8FDI4MF_00933165) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FDI4MF_00933165, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1175), '}'), '')))), '[^-]', ''))) AS ?step2176) .
BIND(((?step2176 + ?targetMotifMatchRegionMatchBeginPositionMF_00933166) - 1) AS ?thisPositionOn55) .
BIND(?thisPositionOn55 AS ?thisPositionOn56) .
BIND(?this AS ?pfs2t177) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn55))) AS ?pfsb52) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn56))) AS ?pfse53) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn55, 1) = 'H')) .
BIND(URI(CONCAT(STR(?this), '#MF_00933a51')) AS ?annotation51) .
BIND(?this AS ?pfs50) .
}
OPTIONAL {
?this up:sequence ?thisSequence .
?thisSequence rdf:value ?thisSequenceValue .
?templateMotifMatch182 faldo:location ?templateMotifSequenceMatchRegionQ8FDI4183 ;
edam:is_output_of ?templateMotifSequenceProfileAlignmentOperationQ8FDI4185 ;
rdf:type edam:data_0869 ;
rdf:value ?templateMotifCigarQ8FDI4MF_00933178 .
?templateMotifSequenceMatchRegionQ8FDI4183 faldo:begin ?templateMotifSequenceMatchBeginQ8FDI4184 .
?templateMotifSequenceMatchBeginQ8FDI4184 faldo:position ?templateMotifSequenceMatchBeginPositionQ8FDI4179 ;
faldo:reference isoform:Q8FDI4-1 .
?templateMotifSequenceProfileAlignmentOperationQ8FDI4185 edam:has_input signature:MF_00933 ;
rdf:type edam:operation_0300 .
?targetMotifMatch186 faldo:location ?targetMotifMatchRegionMatch187 ;
edam:is_output_of ?targetMotifSequenceAlignmentOperationMF_00933189 ;
rdf:type edam:data_0869 ;
rdf:value ?targetMotifMatchCigarQ8FDI4MF_00933180 .
?targetMotifMatchRegionMatch187 faldo:begin ?targetMotifMatchRegionMatchBeginMF_00933188 .
?targetMotifMatchRegionMatchBeginMF_00933188 faldo:position ?targetMotifMatchRegionMatchBeginPositionMF_00933181 ;
faldo:reference ?thisSequence .
?targetMotifSequenceAlignmentOperationMF_00933189 edam:has_input signature:MF_00933 ;
rdf:type edam:operation_0300 .
BIND(STRLEN(REPLACE(SUBSTR(?templateMotifCigarQ8FDI4MF_00933178, 1, (STRLEN(?templateMotifCigarQ8FDI4MF_00933178) - STRLEN(REPLACE(?templateMotifCigarQ8FDI4MF_00933178, CONCAT('^(?:-*[^-]){', STR(((528 - ?templateMotifSequenceMatchBeginPositionQ8FDI4179) + 1)), '}'), '')))), '[a-z]', '')) AS ?step1190) .
BIND((STRLEN(SUBSTR(?targetMotifMatchCigarQ8FDI4MF_00933180, 1, (STRLEN(?targetMotifMatchCigarQ8FDI4MF_00933180) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FDI4MF_00933180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), ''))))) - STRLEN(REPLACE(SUBSTR(?targetMotifMatchCigarQ8FDI4MF_00933180, 1, (STRLEN(?targetMotifMatchCigarQ8FDI4MF_00933180) - STRLEN(REPLACE(?targetMotifMatchCigarQ8FDI4MF_00933180, CONCAT('^(?:[a-z]*(?:[A-Z]|-)){', STR(?step1190), '}'), '')))), '[^-]', ''))) AS ?step2191) .
BIND(((?step2191 + ?targetMotifMatchRegionMatchBeginPositionMF_00933181) - 1) AS ?thisPositionOn62) .
BIND(?thisPositionOn62 AS ?thisPositionOn63) .
BIND(?this AS ?pfs2t192) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn62))) AS ?pfsb59) .
BIND(URI(CONCAT(STR(?thisSequence), '#position', STR(?thisPositionOn63))) AS ?pfse60) .
FILTER ((SUBSTR(?thisSequenceValue, ?thisPositionOn62, 1) = 'T')) .
BIND(URI(CONCAT(STR(?this), '#MF_00933a58')) AS ?annotation58) .
BIND(?this AS ?pfs57) .
}
OPTIONAL {
?this a up:Protein .
BIND(?this AS ?caseWithTag193) .
}
BIND(IF(BOUND(?tagdisulf), ?caseWithTag193, ?UNBOUND_VARIABLE) AS ?case9) .
OPTIONAL {
?this up:annotation ?samsignal194 ;
up:sequence ?thisSequence .
?samsignal194 up:range ?samsignalr195 ;
rdf:type up:Signal_Peptide_Annotation .
?samsignalr195 faldo:begin ?samsignalb196 ;
faldo:end ?samsignale197 .
?samsignalb196 faldo:position ?samsignalbp198 ;
faldo:reference ?thisSequence .
?samsignale197 faldo:position ?samsignalep199 ;
faldo:reference ?thisSequence .
BIND(?this AS ?sam64) .
}
BIND(URI(CONCAT(STR(?this), '#MF_00933a70')) AS ?keyword70) .
}
"xsd:string |
